Wall clock time and date at job start Wed Apr 1 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46808 * 2 1 4 4 H 1.08995 * 109.47023 * 304.99773 * 3 2 1 5 5 C 1.50705 * 109.46905 * 184.99938 * 3 2 1 6 6 H 1.07995 * 120.00093 * 239.99963 * 5 3 2 7 7 C 1.37878 * 119.99698 * 60.00149 * 5 3 2 8 8 N 1.31507 * 120.00372 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99485 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47560 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47275 * 120.00073 * 9 7 5 12 12 H 1.48504 * 109.47286 * 239.99791 * 9 7 5 13 13 O 1.45197 * 109.46975 * 65.00016 * 3 2 1 14 14 C 1.34805 * 117.00371 * 269.99789 * 13 3 2 15 15 O 1.21557 * 119.99569 * 0.02562 * 14 13 3 16 16 C 1.47018 * 120.00499 * 179.97438 * 14 13 3 17 17 C 1.38872 * 120.91883 * 180.02562 * 16 14 13 18 18 C 1.41115 * 118.87834 * 179.97438 * 17 16 14 19 19 C 1.38492 * 120.68633 * 359.68465 * 18 17 16 20 20 N 1.34838 * 120.48412 * 0.58168 * 19 18 17 21 21 H 0.97004 * 119.01728 * 179.56611 * 20 19 18 22 22 C 1.34326 * 121.96867 * 359.54279 * 20 19 18 23 23 O 1.21785 * 120.09179 * 180.09253 * 22 20 19 24 24 C 1.50713 * 121.40599 * 180.94780 * 19 18 17 25 25 C 1.52550 * 111.34583 * 336.79548 * 24 19 18 26 26 C 1.53003 * 109.51064 * 174.75899 * 25 24 19 27 27 C 1.53002 * 109.51281 * 294.90549 * 25 24 19 28 28 C 1.53083 * 109.36254 * 54.71305 * 25 24 19 29 29 C 1.47296 * 118.95904 * 179.66518 * 18 17 16 30 30 O 1.21313 * 121.06476 * 348.50789 * 29 18 17 31 31 H 1.08995 * 109.47023 * 299.99425 * 1 2 3 32 32 H 1.08994 * 109.46874 * 60.00295 * 1 2 3 33 33 H 1.09002 * 109.46882 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47619 * 240.00186 * 2 1 3 35 35 H 1.09003 * 109.47383 * 119.99935 * 2 1 3 36 36 H 0.97005 * 120.00255 * 179.97438 * 8 7 5 37 37 H 1.08003 * 120.56594 * 359.94432 * 17 16 14 38 38 H 1.08993 * 109.10666 * 97.27904 * 24 19 18 39 39 H 1.09003 * 109.10170 * 216.32091 * 24 19 18 40 40 H 1.08999 * 109.47313 * 59.99851 * 26 25 24 41 41 H 1.08997 * 109.47216 * 179.97438 * 26 25 24 42 42 H 1.08996 * 109.46656 * 299.99964 * 26 25 24 43 43 H 1.08993 * 109.47155 * 59.99767 * 27 25 24 44 44 H 1.09003 * 109.46893 * 180.02562 * 27 25 24 45 45 H 1.09007 * 109.46607 * 300.00029 * 27 25 24 46 46 H 1.09003 * 109.86580 * 177.09136 * 28 25 24 47 47 H 1.09001 * 109.75054 * 56.07152 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5464 -0.1942 11 1 6.4971 -0.5173 -1.4630 12 1 6.3990 1.6169 -2.6102 13 8 1.6558 2.0917 1.2407 14 6 0.4675 2.7281 1.2561 15 8 -0.2286 2.7397 0.2597 16 6 0.0131 3.4073 2.4782 17 6 -1.2077 4.0682 2.5154 18 6 -1.6018 4.7052 3.7113 19 6 -0.7898 4.6679 4.8327 20 7 0.3981 4.0310 4.7961 21 1 0.9527 4.0235 5.5920 22 6 0.8363 3.4060 3.6908 23 8 1.9145 2.8397 3.6964 24 6 -1.2040 5.3245 6.1244 25 6 -2.2263 6.4306 5.8822 26 6 -2.7141 6.9785 7.2249 27 6 -1.5788 7.5571 5.0744 28 6 -3.4129 5.8624 5.0995 29 6 -2.8929 5.4130 3.7505 30 8 -3.5170 5.6333 2.7338 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8293 -0.0611 -2.9499 37 1 -1.8447 4.0947 1.6436 38 1 -1.6404 4.5733 6.7826 39 1 -0.3241 5.7513 6.6058 40 1 -1.8683 7.3816 7.7818 41 1 -3.4442 7.7690 7.0512 42 1 -3.1771 6.1755 7.7984 43 1 -1.2337 7.1659 4.1174 44 1 -2.3097 8.3471 4.9021 45 1 -0.7315 7.9609 5.6286 46 1 -4.1721 6.6332 4.9664 47 1 -3.8353 5.0129 5.6360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188103666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:02 Heat of formation + Delta-G solvation = -146.091771 kcal Electronic energy + Delta-G solvation = -31237.339346 eV Core-core repulsion = 26964.031705 eV Total energy + Delta-G solvation = -4273.307640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89848 -39.96893 -39.14175 -37.98169 -36.69525 -35.67146 -33.78566 -33.30087 -31.32098 -31.06549 -29.48455 -28.07642 -27.81562 -26.99557 -24.16374 -23.70477 -23.17868 -22.40799 -20.77202 -19.67865 -18.85924 -18.22094 -17.82716 -16.77314 -16.43066 -16.40282 -15.95419 -15.88117 -15.54342 -15.24551 -15.10654 -14.85425 -14.82471 -14.36946 -14.31239 -13.73023 -13.34023 -12.97444 -12.88256 -12.75859 -12.70331 -12.50584 -12.44209 -12.02631 -11.80729 -11.77142 -11.43298 -11.37284 -11.34446 -11.22140 -11.05075 -10.87660 -10.52590 -10.52433 -10.18315 -10.14228 -10.01881 -9.68506 -9.53891 -9.22056 -8.64436 -8.34430 -8.21319 -6.06640 -4.11707 0.11114 0.97150 2.26734 2.33155 2.91425 3.31295 3.37479 3.43532 3.52241 3.58094 3.81176 3.82025 3.85237 4.04399 4.20444 4.40490 4.42555 4.56372 4.67050 4.73497 4.87871 4.91827 5.03112 5.10554 5.23659 5.25437 5.29173 5.36503 5.41281 5.44529 5.59684 5.62124 5.73558 5.83325 6.12116 6.24466 6.34543 6.42378 6.47361 6.58360 7.00708 7.08363 7.24351 7.30074 7.37969 7.75007 7.81782 7.87315 8.06218 8.30215 8.77772 9.05232 9.52506 11.00523 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002686 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.094307 B =10423.028692 C =11106.864564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.218 3.782 4 H 0.047 0.953 5 C -0.513 4.513 6 H 0.070 0.930 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.326 6.326 14 C 0.513 3.487 15 O -0.517 6.517 16 C -0.236 4.236 17 C 0.077 3.923 18 C -0.290 4.290 19 C 0.260 3.740 20 N -0.600 5.600 21 H 0.418 0.582 22 C 0.528 3.472 23 O -0.473 6.473 24 C -0.097 4.097 25 C -0.052 4.052 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.156 4.156 29 C 0.418 3.582 30 O -0.451 6.451 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.264 0.736 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 13.630 23.260 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.165 3.835 4 H 0.064 0.936 5 C -0.551 4.551 6 H 0.088 0.912 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.240 6.240 14 C 0.358 3.642 15 O -0.410 6.410 16 C -0.241 4.241 17 C 0.056 3.944 18 C -0.297 4.297 19 C 0.143 3.857 20 N -0.232 5.232 21 H 0.258 0.742 22 C 0.324 3.676 23 O -0.345 6.345 24 C -0.135 4.135 25 C -0.053 4.053 26 C -0.198 4.198 27 C -0.215 4.215 28 C -0.194 4.194 29 C 0.295 3.705 30 O -0.325 6.325 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.176 0.824 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.847 13.185 22.039 29.177 hybrid contribution 1.179 -0.172 0.132 1.199 sum -12.668 13.013 22.171 28.659 Atomic orbital electron populations 1.21852 0.98462 0.98869 1.00727 1.22008 0.92570 0.99434 1.03271 1.20705 0.95079 0.88811 0.78865 0.93568 1.21108 0.89782 1.38233 1.05957 0.91227 1.24878 0.99106 0.94967 0.95143 1.69906 1.35126 1.38325 1.09519 0.86249 0.84194 0.77777 0.78102 1.19500 1.20798 1.20849 1.86749 1.32588 1.61590 1.43121 1.19991 0.81505 0.76826 0.85903 1.90814 1.56001 1.59691 1.34502 1.21249 0.97688 1.11006 0.94181 1.21997 0.92094 0.83937 0.96354 1.19630 1.01115 1.14825 0.94106 1.21194 0.83693 0.85397 0.95389 1.43601 1.17503 1.45349 1.16704 0.74231 1.18271 0.87110 0.79506 0.82746 1.91102 1.20369 1.41262 1.81802 1.21098 1.01501 0.98742 0.92128 1.20395 0.93514 0.94543 0.96834 1.21860 1.01796 1.01518 0.94654 1.22105 1.01269 0.97865 1.00310 1.22409 0.98776 1.03343 0.94875 1.22023 0.83221 0.74796 0.90447 1.90608 1.57402 1.46971 1.37504 0.95044 0.92769 0.94906 0.87366 0.94017 0.92603 0.82351 0.86983 0.88015 0.91785 0.91510 0.91857 0.91942 0.91425 0.91633 0.88023 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.56 37.16 0.32 -3.03 16 2 C -0.13 -3.60 5.49 -26.73 -0.15 -3.75 16 3 C 0.22 6.26 2.25 -27.88 -0.06 6.20 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.51 -15.37 8.90 -34.44 -0.31 -15.68 16 6 H 0.07 2.11 7.81 -52.49 -0.41 1.70 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -26.26 11.29 55.43 0.63 -25.64 16 9 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 O -0.33 -8.71 8.15 -47.70 -0.39 -9.10 16 14 C 0.51 12.05 6.35 34.29 0.22 12.27 16 15 O -0.52 -12.87 13.60 -19.31 -0.26 -13.13 16 16 C -0.24 -4.27 6.05 -102.75 -0.62 -4.89 16 17 C 0.08 1.13 9.21 -38.26 -0.35 0.78 16 18 C -0.29 -3.04 5.06 -105.03 -0.53 -3.57 16 19 C 0.26 1.93 6.19 -81.17 -0.50 1.43 16 20 N -0.60 -5.68 5.14 -9.17 -0.05 -5.72 16 21 H 0.42 2.56 8.66 -40.82 -0.35 2.20 16 22 C 0.53 8.53 7.88 -13.11 -0.10 8.43 16 23 O -0.47 -9.75 16.23 -15.40 -0.25 -10.00 16 24 C -0.10 -0.27 4.48 -28.11 -0.13 -0.40 16 25 C -0.05 -0.17 0.77 -154.69 -0.12 -0.29 16 26 C -0.14 -0.21 8.48 37.16 0.32 0.11 16 27 C -0.16 -0.75 8.00 37.16 0.30 -0.45 16 28 C -0.16 -0.76 5.05 -27.50 -0.14 -0.90 16 29 C 0.42 4.00 5.69 -30.28 -0.17 3.83 16 30 O -0.45 -6.06 17.21 5.53 0.10 -5.97 16 31 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 32 H 0.05 1.32 7.79 -51.93 -0.40 0.91 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 3.08 5.95 -51.93 -0.31 2.77 16 35 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.16 2.48 7.36 -52.48 -0.39 2.10 16 38 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 39 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 41 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.06 0.44 6.03 -51.93 -0.31 0.13 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -38.39 380.86 -8.29 -46.67 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.65 Total: -1.74 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.13 Total: 1.74 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.58 Total: -31.36 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.81 Total: -38.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.39 -8.29 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188103666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.419 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds