Wall clock time and date at job start Wed Apr 1 2020 04:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46808 * 2 1 4 4 H 1.08995 * 109.47023 * 304.99773 * 3 2 1 5 5 C 1.50705 * 109.46905 * 184.99938 * 3 2 1 6 6 H 1.07995 * 120.00093 * 239.99963 * 5 3 2 7 7 C 1.37878 * 119.99698 * 60.00149 * 5 3 2 8 8 N 1.31507 * 120.00372 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99485 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47560 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47275 * 120.00073 * 9 7 5 12 12 H 1.48504 * 109.47286 * 239.99791 * 9 7 5 13 13 O 1.45197 * 109.46975 * 65.00016 * 3 2 1 14 14 C 1.34805 * 117.00371 * 269.99789 * 13 3 2 15 15 O 1.21557 * 119.99569 * 0.02562 * 14 13 3 16 16 C 1.47018 * 120.00499 * 179.97438 * 14 13 3 17 17 C 1.38872 * 120.91883 * 180.02562 * 16 14 13 18 18 C 1.41115 * 118.87834 * 179.97438 * 17 16 14 19 19 C 1.38492 * 120.68633 * 359.68465 * 18 17 16 20 20 N 1.34838 * 120.48412 * 0.58168 * 19 18 17 21 21 H 0.97004 * 119.01728 * 179.56611 * 20 19 18 22 22 C 1.34326 * 121.96867 * 359.54279 * 20 19 18 23 23 O 1.21785 * 120.09179 * 180.09253 * 22 20 19 24 24 C 1.50713 * 121.40599 * 180.94780 * 19 18 17 25 25 C 1.52550 * 111.34583 * 336.79548 * 24 19 18 26 26 C 1.53003 * 109.51064 * 174.75899 * 25 24 19 27 27 C 1.53002 * 109.51281 * 294.90549 * 25 24 19 28 28 C 1.53083 * 109.36254 * 54.71305 * 25 24 19 29 29 C 1.47296 * 118.95904 * 179.66518 * 18 17 16 30 30 O 1.21313 * 121.06476 * 348.50789 * 29 18 17 31 31 H 1.08995 * 109.47023 * 299.99425 * 1 2 3 32 32 H 1.08994 * 109.46874 * 60.00295 * 1 2 3 33 33 H 1.09002 * 109.46882 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47619 * 240.00186 * 2 1 3 35 35 H 1.09003 * 109.47383 * 119.99935 * 2 1 3 36 36 H 0.97005 * 120.00255 * 179.97438 * 8 7 5 37 37 H 1.08003 * 120.56594 * 359.94432 * 17 16 14 38 38 H 1.08993 * 109.10666 * 97.27904 * 24 19 18 39 39 H 1.09003 * 109.10170 * 216.32091 * 24 19 18 40 40 H 1.08999 * 109.47313 * 59.99851 * 26 25 24 41 41 H 1.08997 * 109.47216 * 179.97438 * 26 25 24 42 42 H 1.08996 * 109.46656 * 299.99964 * 26 25 24 43 43 H 1.08993 * 109.47155 * 59.99767 * 27 25 24 44 44 H 1.09003 * 109.46893 * 180.02562 * 27 25 24 45 45 H 1.09007 * 109.46607 * 300.00029 * 27 25 24 46 46 H 1.09003 * 109.86580 * 177.09136 * 28 25 24 47 47 H 1.09001 * 109.75054 * 56.07152 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5464 -0.1942 11 1 6.4971 -0.5173 -1.4630 12 1 6.3990 1.6169 -2.6102 13 8 1.6558 2.0917 1.2407 14 6 0.4675 2.7281 1.2561 15 8 -0.2286 2.7397 0.2597 16 6 0.0131 3.4073 2.4782 17 6 -1.2077 4.0682 2.5154 18 6 -1.6018 4.7052 3.7113 19 6 -0.7898 4.6679 4.8327 20 7 0.3981 4.0310 4.7961 21 1 0.9527 4.0235 5.5920 22 6 0.8363 3.4060 3.6908 23 8 1.9145 2.8397 3.6964 24 6 -1.2040 5.3245 6.1244 25 6 -2.2263 6.4306 5.8822 26 6 -2.7141 6.9785 7.2249 27 6 -1.5788 7.5571 5.0744 28 6 -3.4129 5.8624 5.0995 29 6 -2.8929 5.4130 3.7505 30 8 -3.5170 5.6333 2.7338 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8293 -0.0611 -2.9499 37 1 -1.8447 4.0947 1.6436 38 1 -1.6404 4.5733 6.7826 39 1 -0.3241 5.7513 6.6058 40 1 -1.8683 7.3816 7.7818 41 1 -3.4442 7.7690 7.0512 42 1 -3.1771 6.1755 7.7984 43 1 -1.2337 7.1659 4.1174 44 1 -2.3097 8.3471 4.9021 45 1 -0.7315 7.9609 5.6286 46 1 -4.1721 6.6332 4.9664 47 1 -3.8353 5.0129 5.6360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188103666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:01 Heat of formation + Delta-G solvation = -172.341481 kcal Electronic energy + Delta-G solvation = -31238.477619 eV Core-core repulsion = 26964.031705 eV Total energy + Delta-G solvation = -4274.445913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.86463 -41.22867 -40.64372 -38.79695 -37.86214 -37.41063 -35.48509 -34.96664 -33.38109 -32.02168 -30.04156 -29.47932 -28.51335 -28.04897 -25.57427 -24.91767 -24.65866 -23.72623 -22.10095 -21.34349 -19.87088 -19.34148 -18.99796 -18.65249 -17.85901 -17.47524 -17.29941 -17.18727 -16.69011 -16.64369 -16.33089 -16.14054 -15.75171 -15.31706 -14.97440 -14.93339 -14.86107 -14.56929 -14.15497 -14.02202 -13.52488 -13.40101 -13.35138 -13.28522 -13.13583 -12.86903 -12.83919 -12.76148 -12.58247 -12.41659 -12.16663 -12.14470 -11.83932 -11.75546 -11.73336 -11.67313 -11.61256 -11.45690 -11.26290 -10.83568 -10.71988 -10.55342 -9.36384 -8.29833 -6.46322 -0.89308 -0.09533 1.17722 1.34436 1.36924 1.38706 1.52805 1.60167 2.04666 2.39633 2.42901 2.88935 2.96655 2.98441 3.21783 3.36476 3.66267 3.77276 3.86673 4.00957 4.15732 4.31343 4.34521 4.34952 4.40826 4.48623 4.60360 4.62911 4.65994 4.75991 4.80893 4.90915 4.93796 5.00726 5.02357 5.11700 5.18398 5.20283 5.28618 5.33183 5.33761 5.40272 5.46240 5.48800 5.60467 5.63067 5.92729 6.10290 6.50398 6.57354 6.64987 6.97755 7.24960 8.77816 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002686 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.094307 B =10423.028692 C =11106.864564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.984 3.016 10 H -0.269 1.269 11 H -0.266 1.266 12 H -0.271 1.271 13 O -0.342 6.342 14 C 0.505 3.495 15 O -0.551 6.551 16 C -0.301 4.301 17 C 0.110 3.890 18 C -0.319 4.319 19 C 0.316 3.684 20 N -0.575 5.575 21 H 0.443 0.557 22 C 0.538 3.462 23 O -0.528 6.528 24 C -0.100 4.100 25 C -0.043 4.043 26 C -0.136 4.136 27 C -0.166 4.166 28 C -0.149 4.149 29 C 0.422 3.578 30 O -0.502 6.502 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.272 0.728 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 14.935 28.211 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.807 3.193 10 H -0.193 1.193 11 H -0.191 1.191 12 H -0.196 1.196 13 O -0.258 6.258 14 C 0.353 3.647 15 O -0.446 6.446 16 C -0.306 4.306 17 C 0.088 3.912 18 C -0.325 4.325 19 C 0.197 3.803 20 N -0.206 5.206 21 H 0.287 0.713 22 C 0.335 3.665 23 O -0.406 6.406 24 C -0.136 4.136 25 C -0.044 4.044 26 C -0.193 4.193 27 C -0.223 4.223 28 C -0.186 4.186 29 C 0.302 3.698 30 O -0.380 6.380 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.474 14.515 27.051 33.941 hybrid contribution 1.160 -0.379 -1.277 1.766 sum -13.314 14.136 25.775 32.271 Atomic orbital electron populations 1.21688 0.96231 1.00637 0.99889 1.21840 0.94524 0.97969 1.02124 1.20432 0.94698 0.89461 0.78694 0.97714 1.21296 0.90470 1.40003 1.06781 0.92579 1.25838 1.04573 0.93741 0.94142 1.70016 1.37398 1.37943 1.09828 0.85131 0.77337 0.78580 0.78296 1.19324 1.19111 1.19619 1.86738 1.34701 1.62541 1.41776 1.20863 0.80090 0.76132 0.87635 1.90762 1.56419 1.61146 1.36236 1.20810 1.00320 1.15778 0.93739 1.22033 0.89948 0.81714 0.97463 1.19872 1.03093 1.15957 0.93550 1.22044 0.80918 0.80965 0.96378 1.43249 1.18177 1.43511 1.15646 0.71331 1.17890 0.85898 0.79209 0.83518 1.91069 1.22453 1.44039 1.82997 1.21584 1.03341 0.99478 0.89197 1.20390 0.92559 0.93837 0.97574 1.21835 1.02368 1.02087 0.93010 1.22193 1.02115 0.98625 0.99350 1.22516 0.99669 1.04715 0.91692 1.22735 0.81929 0.73131 0.92021 1.90604 1.58530 1.49042 1.39788 0.95155 0.94341 0.91585 0.89151 0.94133 0.91894 0.84489 0.82270 0.84041 0.90516 0.91690 0.90015 0.95023 0.91533 0.89969 0.87358 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.56 71.98 0.62 -5.70 16 2 C -0.13 -7.17 5.49 30.60 0.17 -7.01 16 3 C 0.22 13.68 2.25 29.85 0.07 13.75 16 4 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 5 C -0.55 -34.86 8.90 25.60 0.23 -34.63 16 6 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 0.99 5.29 84.66 0.45 1.43 16 8 N -0.91 -55.84 11.29 21.45 0.24 -55.60 16 9 Si 0.98 46.47 29.54 68.60 2.03 48.49 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 O -0.34 -19.91 8.15 -50.55 -0.41 -20.32 16 14 C 0.50 26.00 6.35 70.12 0.45 26.44 16 15 O -0.55 -30.27 13.60 19.65 0.27 -30.01 16 16 C -0.30 -11.71 6.05 -18.65 -0.11 -11.82 16 17 C 0.11 3.44 9.21 23.13 0.21 3.66 16 18 C -0.32 -6.32 5.06 -20.13 -0.10 -6.42 16 19 C 0.32 3.51 6.19 42.16 0.26 3.77 16 20 N -0.58 -9.34 5.14 -301.35 -1.55 -10.89 16 21 H 0.44 3.53 8.66 -92.71 -0.80 2.73 16 22 C 0.54 17.78 7.88 86.48 0.68 18.47 16 23 O -0.53 -22.80 16.23 14.99 0.24 -22.56 16 24 C -0.10 0.14 4.48 29.70 0.13 0.27 16 25 C -0.04 -0.04 0.77 -52.30 -0.04 -0.08 16 26 C -0.14 0.50 8.48 71.98 0.61 1.12 16 27 C -0.17 -0.98 8.00 71.98 0.58 -0.40 16 28 C -0.15 -0.81 5.05 30.10 0.15 -0.65 16 29 C 0.42 7.48 5.69 28.29 0.16 7.64 16 30 O -0.50 -13.88 17.21 -3.13 -0.05 -13.93 16 31 H 0.03 1.47 6.06 -2.39 -0.01 1.46 16 32 H 0.04 1.99 7.79 -2.39 -0.02 1.97 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.09 5.42 5.95 -2.39 -0.01 5.41 16 35 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 37 H 0.14 4.81 7.36 -2.91 -0.02 4.79 16 38 H 0.16 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.14 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.03 0.39 6.03 -2.39 -0.01 0.37 16 44 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -97.05 380.86 5.48 -91.57 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.21 Total: 3.41 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.51 Total: 9.84 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.31 Total: -66.49 kcal Atomic # 8 Polarization: -86.86 SS G_CDS: 0.04 Total: -86.82 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -97.05 5.48 -91.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188103666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.771 kcal (2) G-P(sol) polarization free energy of solvation -97.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds