Wall clock time and date at job start Wed Apr 1 2020 04:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.52996 * 109.47374 * 239.99410 * 2 1 3 5 5 O 1.45207 * 109.46958 * 119.99449 * 2 1 3 6 6 C 1.34690 * 116.99765 * 60.00238 * 5 2 1 7 7 O 1.21438 * 120.00428 * 359.97438 * 6 5 2 8 8 C 1.47935 * 119.99658 * 179.97438 * 6 5 2 9 9 C 1.39593 * 120.00263 * 179.97438 * 8 6 5 10 10 C 1.37818 * 119.99466 * 180.02562 * 9 8 6 11 11 C 1.39562 * 120.00233 * 359.97402 * 10 9 8 12 12 C 1.48042 * 119.99205 * 180.02562 * 11 10 9 13 13 O 1.21530 * 119.99913 * 171.43999 * 12 11 10 14 14 N 1.34781 * 120.00422 * 351.44541 * 12 11 10 15 15 C 1.47578 * 134.49519 * 181.72758 * 14 12 11 16 16 C 1.53952 * 86.11555 * 155.35869 * 15 14 12 17 17 O 1.42894 * 113.74447 * 269.15842 * 16 15 14 18 18 C 1.50700 * 113.73698 * 137.95352 * 16 15 14 19 19 H 1.07996 * 120.00344 * 17.15133 * 18 16 15 20 20 C 1.37878 * 119.99680 * 197.14732 * 18 16 15 21 21 N 1.31516 * 119.99910 * 191.77145 * 20 18 16 22 22 Si 1.86805 * 120.00222 * 11.76833 * 20 18 16 23 23 H 1.48496 * 109.47144 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47121 * 300.00217 * 22 20 18 25 25 H 1.48504 * 109.46666 * 60.00110 * 22 20 18 26 26 C 1.47813 * 134.45331 * 1.59992 * 14 12 11 27 27 C 1.39552 * 120.01082 * 0.30100 * 11 10 9 28 28 C 1.37816 * 120.00458 * 359.44693 * 27 11 10 29 29 H 1.08995 * 109.47613 * 300.00260 * 1 2 3 30 30 H 1.08994 * 109.46893 * 60.00589 * 1 2 3 31 31 H 1.09004 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47697 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46742 * 299.99849 * 3 2 1 34 34 H 1.09004 * 109.47210 * 59.99569 * 3 2 1 35 35 H 1.08998 * 109.47085 * 299.99973 * 4 2 1 36 36 H 1.08994 * 109.47110 * 60.00134 * 4 2 1 37 37 H 1.09005 * 109.47089 * 179.97438 * 4 2 1 38 38 H 1.08000 * 120.00782 * 0.02562 * 9 8 6 39 39 H 1.07997 * 119.99886 * 180.02562 * 10 9 8 40 40 H 1.09005 * 113.76802 * 41.06253 * 15 14 12 41 41 H 1.08996 * 113.77238 * 269.66237 * 15 14 12 42 42 H 0.96702 * 114.00275 * 177.01633 * 17 16 15 43 43 H 0.96992 * 119.99986 * 354.87383 * 21 20 18 44 44 H 1.08999 * 113.77353 * 90.37555 * 26 14 12 45 45 H 1.09003 * 113.83637 * 318.91547 * 26 14 12 46 46 H 1.08001 * 119.99560 * 179.70588 * 27 11 10 47 47 H 1.07998 * 120.00338 * 180.27400 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6520 -1.9727 1.3386 7 8 0.9511 -2.5096 0.5048 8 6 2.1084 -2.7337 2.5222 9 6 1.7330 -4.0688 2.6811 10 6 2.1578 -4.7774 3.7841 11 6 2.9638 -4.1604 4.7420 12 6 3.4205 -4.9220 5.9265 13 8 4.2444 -4.4396 6.6784 14 7 2.9226 -6.1504 6.1711 15 6 3.1165 -7.1514 7.2379 16 6 1.7186 -7.6729 6.8585 17 8 0.6573 -7.0632 7.5960 18 6 1.6210 -9.1763 6.8225 19 1 2.3755 -9.7781 7.3072 20 6 0.5685 -9.7834 6.1708 21 7 0.3509 -11.0706 6.3302 22 14 -0.5485 -8.7776 5.0616 23 1 -1.5956 -9.6580 4.4841 24 1 -1.1914 -7.6986 5.8538 25 1 0.2534 -8.1765 3.9657 26 6 1.9612 -7.0343 5.4789 27 6 3.3345 -2.8241 4.5863 28 6 2.9142 -2.1166 3.4808 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2490 36 1 1.6768 -0.2076 -2.1391 37 1 3.1301 -0.7209 -1.2493 38 1 1.1096 -4.5464 1.9397 39 1 1.8677 -5.8104 3.9069 40 1 3.1686 -6.7225 8.2387 41 1 3.9196 -7.8598 7.0351 42 1 -0.2253 -7.3546 7.3291 43 1 0.9729 -11.6074 6.8456 44 1 2.4242 -7.7082 4.7581 45 1 1.0926 -6.5120 5.0777 46 1 3.9543 -2.3455 5.3301 47 1 3.2047 -1.0837 3.3581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193971791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:48 Heat of formation + Delta-G solvation = -112.051474 kcal Electronic energy + Delta-G solvation = -30493.729045 eV Core-core repulsion = 26221.897503 eV Total energy + Delta-G solvation = -4271.831542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.08625 -41.66885 -40.08469 -38.97161 -37.91437 -36.10803 -35.14629 -34.65220 -32.95324 -32.23235 -30.47729 -28.37141 -28.28810 -27.77486 -27.17235 -25.83128 -23.91106 -22.98704 -21.81592 -20.78251 -20.71171 -19.94664 -18.95107 -18.56133 -17.72252 -17.67202 -17.16617 -17.08387 -16.75549 -16.23273 -15.89290 -15.66983 -15.47070 -15.34147 -15.20049 -14.84113 -14.63407 -14.52966 -14.32772 -14.26122 -13.96974 -13.66325 -13.54342 -13.37106 -13.08980 -13.00099 -12.94105 -12.86914 -12.48800 -12.45252 -12.27315 -12.18389 -12.17661 -11.78807 -11.42131 -11.36165 -11.16369 -11.12547 -10.88865 -10.36771 -10.32100 -10.20347 -9.76999 -8.82347 -6.59932 -0.83515 0.17064 1.08070 1.41739 1.47702 1.50843 1.57526 1.74769 1.84009 2.42652 2.66689 2.90466 3.08391 3.38137 3.50910 3.60675 3.69748 3.74754 3.78064 3.79413 3.95245 4.08678 4.12413 4.22701 4.29703 4.44405 4.51847 4.56163 4.58430 4.61621 4.67505 4.77291 4.78561 4.85413 4.87563 4.89123 4.94758 4.98563 5.09039 5.15051 5.20368 5.26865 5.28420 5.45353 5.55798 5.57844 5.91775 6.40404 6.56501 6.67138 6.89993 6.92780 7.26544 8.53137 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002655 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.373021 B =10544.758547 C =11859.010624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.346 6.346 6 C 0.515 3.485 7 O -0.513 6.513 8 C -0.112 4.112 9 C -0.060 4.060 10 C -0.115 4.115 11 C -0.103 4.103 12 C 0.565 3.435 13 O -0.581 6.581 14 N -0.625 5.625 15 C 0.126 3.874 16 C 0.191 3.809 17 O -0.573 6.573 18 C -0.618 4.618 19 H 0.035 0.965 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 1.062 2.938 23 H -0.288 1.288 24 H -0.246 1.246 25 H -0.230 1.230 26 C 0.059 3.941 27 C -0.077 4.077 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.375 0.625 43 H 0.258 0.742 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.148 0.852 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 23.968 -16.033 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.263 6.263 6 C 0.361 3.639 7 O -0.404 6.404 8 C -0.114 4.114 9 C -0.078 4.078 10 C -0.133 4.133 11 C -0.106 4.106 12 C 0.357 3.643 13 O -0.463 6.463 14 N -0.357 5.357 15 C 0.004 3.996 16 C 0.150 3.850 17 O -0.383 6.383 18 C -0.656 4.656 19 H 0.053 0.947 20 C -0.209 4.209 21 N -0.555 5.555 22 Si 0.881 3.119 23 H -0.214 1.214 24 H -0.171 1.171 25 H -0.153 1.153 26 C -0.063 4.063 27 C -0.095 4.095 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.226 0.774 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.116 0.884 46 H 0.166 0.834 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.495 24.484 -16.574 29.571 hybrid contribution 1.111 -1.276 1.214 2.082 sum 1.605 23.209 -15.360 27.877 Atomic orbital electron populations 1.22485 0.93847 1.03661 1.03956 1.22563 0.94745 0.93408 0.82110 1.21886 1.02526 0.90625 1.04337 1.22482 1.01912 1.02080 0.97442 1.86581 1.69595 1.23868 1.46302 1.21065 0.76946 0.80900 0.85013 1.90750 1.35825 1.70529 1.43265 1.19480 1.02668 0.94398 0.94817 1.21343 0.97261 0.92281 0.96930 1.22024 0.96052 1.01997 0.93197 1.20168 1.00066 0.95714 0.94644 1.18440 0.80244 0.80323 0.85295 1.90703 1.35218 1.69804 1.50607 1.50015 1.44074 1.14099 1.27528 1.23266 0.97363 0.87349 0.91656 1.20381 0.85978 0.90627 0.87982 1.86365 1.17788 1.69877 1.64225 1.22273 1.13443 0.90868 1.39039 0.94697 1.27286 0.98684 0.97533 0.97370 1.70944 1.36044 1.08210 1.40265 0.83989 0.75815 0.75064 0.76992 1.21441 1.17058 1.15283 1.24844 0.91967 0.90241 0.99205 1.21361 0.98160 0.91892 0.98129 1.21599 0.93565 1.01306 0.90918 0.91686 0.88962 0.92034 0.91065 0.88206 0.91094 0.92039 0.88970 0.91656 0.82714 0.83100 0.91183 0.88143 0.77405 0.93243 0.87035 0.88422 0.83415 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.37 71.98 0.60 -2.01 16 2 C 0.11 1.54 1.13 -10.80 -0.01 1.52 16 3 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 4 C -0.18 -2.59 8.37 71.98 0.60 -1.98 16 5 O -0.35 -6.39 9.13 -55.99 -0.51 -6.91 16 6 C 0.52 11.27 7.21 70.39 0.51 11.77 16 7 O -0.51 -12.90 11.87 20.04 0.24 -12.66 16 8 C -0.11 -2.45 5.88 -20.05 -0.12 -2.57 16 9 C -0.06 -1.38 9.58 22.50 0.22 -1.17 16 10 C -0.11 -3.01 9.07 22.49 0.20 -2.80 16 11 C -0.10 -3.05 5.88 -20.04 -0.12 -3.17 16 12 C 0.57 21.07 7.99 86.84 0.69 21.76 16 13 O -0.58 -24.77 17.10 -3.81 -0.07 -24.83 16 14 N -0.62 -23.70 3.61 -842.80 -3.04 -26.74 16 15 C 0.13 5.12 8.23 86.49 0.71 5.84 16 16 C 0.19 8.21 1.07 -10.88 -0.01 8.20 16 17 O -0.57 -24.85 13.46 -148.98 -2.01 -26.85 16 18 C -0.62 -31.24 9.04 25.60 0.23 -31.01 16 19 H 0.03 1.96 8.05 -2.91 -0.02 1.94 16 20 C -0.01 -0.39 5.44 84.65 0.46 0.07 16 21 N -0.92 -52.18 13.70 21.45 0.29 -51.89 16 22 Si 1.06 40.58 24.65 68.60 1.69 42.27 16 23 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.25 -8.09 5.75 99.48 0.57 -7.52 16 25 H -0.23 -7.19 6.39 99.48 0.64 -6.55 16 26 C 0.06 2.12 3.25 86.44 0.28 2.40 16 27 C -0.08 -1.87 9.58 22.49 0.22 -1.66 16 28 C -0.06 -1.11 9.60 22.50 0.22 -0.89 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.20 5.88 -2.39 -0.01 1.18 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 1.19 5.88 -2.39 -0.01 1.17 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.16 3.20 7.64 -2.91 -0.02 3.18 16 39 H 0.15 3.94 3.88 -2.91 -0.01 3.93 16 40 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 41 H 0.10 3.91 8.09 -2.39 -0.02 3.89 16 42 H 0.37 14.75 5.85 -74.06 -0.43 14.32 16 43 H 0.26 14.98 8.72 -92.71 -0.81 14.17 16 44 H 0.11 3.78 8.08 -2.39 -0.02 3.76 16 45 H 0.10 3.07 5.08 -2.39 -0.01 3.05 16 46 H 0.15 3.48 7.66 -2.91 -0.02 3.46 16 47 H 0.17 2.41 7.60 -2.91 -0.02 2.39 16 Total: -1.00 -66.69 378.87 2.26 -64.43 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.34 Total: 39.40 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.32 Total: 3.77 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.75 Total: -78.63 kcal Atomic # 8 Polarization: -68.90 SS G_CDS: -2.34 Total: -71.25 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.69 Total: 42.27 kcal Total: -66.69 2.26 -64.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193971791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.618 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds