Wall clock time and date at job start Wed Apr 1 2020 04:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99601 * 2 1 4 4 O 1.20833 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00214 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47476 * 179.97438 * 5 3 2 7 7 C 1.34769 * 120.00436 * 89.99853 * 6 5 3 8 8 O 1.21724 * 119.99633 * 5.78300 * 7 6 5 9 9 C 1.46256 * 120.00451 * 185.78248 * 7 6 5 10 10 C 1.35022 * 120.00007 * 172.64844 * 9 7 6 11 11 C 1.46962 * 120.00180 * 346.17649 * 10 9 7 12 12 C 1.40029 * 120.09750 * 317.68802 * 11 10 9 13 13 C 1.37601 * 119.89602 * 179.79097 * 12 11 10 14 14 C 1.39183 * 120.10046 * 0.48562 * 13 12 11 15 15 O 1.35564 * 119.90093 * 179.76575 * 14 13 12 16 16 C 1.34781 * 117.00374 * 174.03642 * 15 14 13 17 17 H 1.08002 * 119.99378 * 5.11001 * 16 15 14 18 18 C 1.38718 * 119.99755 * 185.10226 * 16 15 14 19 19 N 1.31505 * 120.00721 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99400 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47059 * 90.00378 * 20 18 16 22 22 H 1.48500 * 109.47129 * 210.00359 * 20 18 16 23 23 H 1.48503 * 109.47357 * 330.00335 * 20 18 16 24 24 C 1.39176 * 120.20092 * 359.74681 * 14 13 12 25 25 C 1.37595 * 120.10395 * 0.02562 * 24 14 13 26 26 C 1.46502 * 120.00003 * 270.00193 * 6 5 3 27 27 C 1.52998 * 109.47087 * 305.54018 * 26 6 5 28 28 C 1.53001 * 109.47293 * 65.54234 * 26 6 5 29 29 H 1.09006 * 109.47214 * 299.99567 * 1 2 3 30 30 H 1.08997 * 109.47133 * 60.00333 * 1 2 3 31 31 H 1.09009 * 109.46590 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47011 * 59.99498 * 5 3 2 33 33 H 1.08997 * 109.46861 * 299.99845 * 5 3 2 34 34 H 1.07994 * 119.99726 * 352.92572 * 9 7 6 35 35 H 1.08001 * 119.99805 * 166.17557 * 10 9 7 36 36 H 1.07998 * 120.05154 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.95093 * 180.22803 * 13 12 11 38 38 H 0.96994 * 120.00451 * 179.97438 * 19 18 16 39 39 H 1.07997 * 119.94712 * 180.02562 * 24 14 13 40 40 H 1.07998 * 120.05530 * 179.97438 * 25 24 14 41 41 H 1.09004 * 109.47416 * 185.54057 * 26 6 5 42 42 H 1.09004 * 109.46961 * 59.99761 * 27 26 6 43 43 H 1.09006 * 109.47136 * 179.97438 * 27 26 6 44 44 H 1.08998 * 109.47415 * 299.99745 * 27 26 6 45 45 H 1.08993 * 109.47177 * 59.99957 * 28 26 6 46 46 H 1.09000 * 109.47617 * 180.02562 * 28 26 6 47 47 H 1.09006 * 109.47139 * 299.99896 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1730 3.3265 1.1658 8 8 4.1040 2.7174 2.2174 9 6 4.4637 4.7599 1.1685 10 6 4.5086 5.4374 2.3356 11 6 3.9760 4.8258 3.5613 12 6 2.7669 4.1204 3.5259 13 6 2.2742 3.5458 4.6750 14 6 2.9706 3.6736 5.8733 15 8 2.4791 3.1099 7.0040 16 6 3.2582 3.1625 8.1026 17 1 4.1891 3.7096 8.0787 18 6 2.8642 2.5141 9.2639 19 7 1.7309 1.8476 9.2929 20 14 3.9437 2.5876 10.7867 21 1 3.5604 3.7634 11.6088 22 1 3.7624 1.3470 11.5824 23 1 5.3664 2.7110 10.3795 24 6 4.1703 4.3779 5.9142 25 6 4.6730 4.9519 4.7691 26 6 4.1887 3.3821 -1.2701 27 6 5.1804 2.5973 -2.1312 28 6 2.8549 3.5027 -2.0099 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.9557 0.7811 -0.8908 33 1 3.9563 0.7808 0.8891 34 1 4.6380 5.2772 0.2368 35 1 4.9359 6.4287 2.3684 36 1 2.2234 4.0249 2.5975 37 1 1.3436 2.9984 4.6480 38 1 1.4556 1.3940 10.1048 39 1 4.7075 4.4742 6.8461 40 1 5.6038 5.4986 4.8018 41 1 4.5866 4.3777 -1.0737 42 1 4.7825 1.6016 -2.3275 43 1 5.3342 3.1195 -3.0756 44 1 6.1306 2.5114 -1.6042 45 1 2.1484 4.0618 -1.3964 46 1 3.0090 4.0247 -2.9543 47 1 2.4570 2.5070 -2.2063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221893500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:42 Heat of formation + Delta-G solvation = -79.295872 kcal Electronic energy + Delta-G solvation = -30944.397837 eV Core-core repulsion = 26673.986684 eV Total energy + Delta-G solvation = -4270.411153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86706 -39.71612 -38.79368 -37.20396 -36.33559 -36.02324 -33.17675 -32.18743 -32.00524 -30.10105 -29.63186 -28.02098 -27.45955 -26.87653 -25.38716 -23.25163 -22.07804 -21.79656 -21.35171 -20.18156 -18.45327 -17.90267 -17.80351 -17.58637 -16.85709 -16.70133 -16.37146 -15.63810 -15.00651 -14.69216 -14.48947 -14.31316 -14.22529 -13.86766 -13.58079 -13.51334 -13.42853 -13.32056 -13.22001 -12.95410 -12.67805 -12.53839 -12.38799 -12.16411 -12.08961 -11.75343 -11.68156 -11.59423 -11.41057 -11.13192 -10.99012 -10.84315 -10.60244 -10.57884 -10.56682 -10.39225 -9.53535 -9.39164 -9.14692 -8.84666 -8.67178 -7.93224 -6.85583 -6.44637 -4.00330 1.21480 2.16146 2.34444 2.48864 2.72719 3.07021 3.14367 3.15903 3.20195 3.62934 3.98161 4.44123 4.61368 4.69126 4.72023 4.82774 4.92437 4.99556 5.02420 5.09570 5.12279 5.26980 5.30106 5.32506 5.38078 5.40016 5.42972 5.52923 5.58233 5.69889 5.75178 5.82784 5.88719 6.09822 6.24034 6.27834 6.32150 6.40171 6.47288 6.61548 6.81761 7.05033 7.13832 7.36136 7.41351 7.49844 7.51624 7.69996 7.93938 8.02049 8.42387 9.00931 9.73088 10.73248 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.002825 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.300168 B = 9908.418160 C =11256.700516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.442 3.558 4 O -0.492 6.492 5 C 0.123 3.877 6 N -0.600 5.600 7 C 0.551 3.449 8 O -0.507 6.507 9 C -0.270 4.270 10 C 0.032 3.968 11 C -0.189 4.189 12 C 0.008 3.992 13 C -0.201 4.201 14 C 0.172 3.828 15 O -0.173 6.173 16 C -0.390 4.390 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.249 4.249 25 C -0.040 4.040 26 C 0.128 3.872 27 C -0.166 4.166 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 1.385 -24.018 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.282 3.718 4 O -0.378 6.378 5 C -0.002 4.002 6 N -0.335 5.335 7 C 0.344 3.656 8 O -0.382 6.382 9 C -0.291 4.291 10 C 0.012 3.988 11 C -0.190 4.190 12 C -0.011 4.011 13 C -0.220 4.220 14 C 0.117 3.883 15 O -0.075 6.075 16 C -0.466 4.466 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.269 4.269 25 C -0.059 4.059 26 C 0.025 3.975 27 C -0.224 4.224 28 C -0.217 4.217 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.245 1.085 -23.187 23.597 hybrid contribution 0.235 0.014 0.530 0.580 sum 4.481 1.099 -22.657 23.122 Atomic orbital electron populations 1.23245 0.76304 1.03585 1.02551 1.86487 1.23506 1.33564 1.84307 1.24519 0.92943 0.81631 0.72710 1.90667 1.66861 1.36171 1.44099 1.20741 0.86999 0.85596 1.06850 1.47723 1.68642 1.10382 1.06743 1.18531 0.75997 0.88557 0.82519 1.90995 1.49181 1.68247 1.29769 1.22629 1.14593 0.93207 0.98642 1.22365 0.87843 0.96907 0.91663 1.18307 0.98756 1.09379 0.92521 1.20520 0.93616 0.91385 0.95566 1.20008 1.02838 1.08325 0.90870 1.19523 0.91188 0.90317 0.87280 1.83905 1.42163 1.66106 1.15317 1.21402 1.03924 1.33833 0.87435 0.88873 1.25327 0.96985 0.95538 0.98710 1.70020 1.20457 1.30325 1.28630 0.85697 0.79492 0.78175 0.79997 1.19840 1.20226 1.19107 1.20954 0.99568 1.07210 0.99129 1.20751 0.97226 0.96505 0.91405 1.21304 0.95847 0.97027 0.83301 1.22209 0.99442 1.00713 0.99992 1.22201 0.97185 1.02230 1.00067 0.91664 0.92162 0.88178 0.86640 0.85462 0.85705 0.85946 0.87943 0.86985 0.91955 0.85617 0.87540 0.88026 0.92323 0.91174 0.91761 0.91090 0.92028 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.41 10.57 -39.25 -0.41 -4.82 16 3 C 0.44 5.84 7.04 36.01 0.25 6.09 16 4 O -0.49 -7.69 13.88 -18.76 -0.26 -7.95 16 5 C 0.12 1.38 5.62 -5.20 -0.03 1.35 16 6 N -0.60 -7.14 1.97 -169.16 -0.33 -7.48 16 7 C 0.55 8.49 6.56 -13.04 -0.09 8.40 16 8 O -0.51 -10.03 11.98 5.17 0.06 -9.97 16 9 C -0.27 -3.57 9.17 -37.50 -0.34 -3.92 16 10 C 0.03 0.46 9.80 -37.19 -0.36 0.10 16 11 C -0.19 -3.59 4.51 -105.02 -0.47 -4.07 16 12 C 0.01 0.16 6.70 -39.14 -0.26 -0.10 16 13 C -0.20 -4.81 9.97 -39.46 -0.39 -5.20 16 14 C 0.17 4.46 6.66 -38.88 -0.26 4.20 16 15 O -0.17 -5.15 9.74 0.76 0.01 -5.15 16 16 C -0.39 -11.23 9.48 30.91 0.29 -10.94 16 17 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 20 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.25 -5.78 9.14 -39.47 -0.36 -6.14 16 25 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 26 C 0.13 1.09 3.13 -67.93 -0.21 0.88 16 27 C -0.17 -1.02 9.06 37.16 0.34 -0.69 16 28 C -0.16 -1.39 7.92 37.16 0.29 -1.10 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.12 0.87 6.15 -51.93 -0.32 0.55 16 33 H 0.13 1.57 7.35 -51.93 -0.38 1.19 16 34 H 0.13 1.20 5.84 -52.49 -0.31 0.89 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.10 2.10 7.05 -52.49 -0.37 1.73 16 37 H 0.11 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 2.87 5.62 -52.49 -0.30 2.57 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 0.78 5.25 -51.93 -0.27 0.51 16 42 H 0.06 0.34 6.51 -51.93 -0.34 0.00 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.47 6.76 -51.93 -0.35 0.12 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -35.94 387.82 -6.62 -42.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.24 Total: 5.93 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.02 Total: -9.87 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.42 Total: -32.46 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.61 Total: -27.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.94 -6.62 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221893500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.738 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds