Wall clock time and date at job start Wed Apr 1 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00285 * 2 1 4 4 O 1.20826 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00340 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47169 * 180.02562 * 5 3 2 7 7 C 1.36821 * 119.99591 * 262.53667 * 6 5 3 8 8 H 1.08007 * 119.99796 * 201.16822 * 7 6 5 9 9 C 1.39070 * 120.00160 * 21.16383 * 7 6 5 10 10 N 1.31354 * 120.00126 * 9.05549 * 9 7 6 11 11 Si 1.86799 * 120.00011 * 189.05009 * 9 7 6 12 12 H 1.48498 * 109.47521 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47233 * 120.00345 * 11 9 7 14 14 H 1.48507 * 109.47234 * 240.00135 * 11 9 7 15 15 C 1.34769 * 120.00118 * 82.53787 * 6 5 3 16 16 O 1.21663 * 120.00439 * 0.02562 * 15 6 5 17 17 C 1.46959 * 120.00009 * 179.97438 * 15 6 5 18 18 C 1.33117 * 120.00384 * 185.33790 * 17 15 6 19 19 C 1.50704 * 119.99910 * 7.36337 * 18 17 15 20 20 C 1.50694 * 120.00322 * 187.36296 * 18 17 15 21 21 C 1.50704 * 109.47312 * 95.00013 * 20 18 17 22 22 C 1.38169 * 120.02753 * 265.00050 * 21 20 18 23 23 C 1.38242 * 120.05440 * 179.97438 * 22 21 20 24 24 C 1.38288 * 120.10979 * 0.02778 * 23 22 21 25 25 C 1.38119 * 120.06101 * 0.02562 * 24 23 22 26 26 C 1.38714 * 120.02738 * 84.72427 * 21 20 18 27 27 O 1.35906 * 120.05365 * 0.02562 * 26 21 20 28 28 C 1.42897 * 116.99747 * 179.97438 * 27 26 21 29 29 H 1.09003 * 109.47181 * 300.00027 * 1 2 3 30 30 H 1.09003 * 109.47494 * 59.99852 * 1 2 3 31 31 H 1.09001 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47073 * 59.99816 * 5 3 2 33 33 H 1.09001 * 109.46852 * 299.99768 * 5 3 2 34 34 H 0.97001 * 119.99911 * 179.97438 * 10 9 7 35 35 H 1.08002 * 119.99771 * 5.34127 * 17 15 6 36 36 H 1.08999 * 109.47145 * 274.26427 * 19 18 17 37 37 H 1.09004 * 109.46862 * 34.26205 * 19 18 17 38 38 H 1.08994 * 109.47026 * 154.25903 * 19 18 17 39 39 H 1.08998 * 109.47306 * 334.99846 * 20 18 17 40 40 H 1.08997 * 109.47246 * 215.00213 * 20 18 17 41 41 H 1.08000 * 119.96987 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.94182 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.96816 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.03137 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.47002 * 180.02562 * 28 27 26 46 46 H 1.09001 * 109.47076 * 300.00383 * 28 27 26 47 47 H 1.09001 * 109.47054 * 60.00490 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.3228 3.2927 -1.1745 8 1 4.9386 4.1799 -1.1616 9 6 3.8765 2.7735 -2.3850 10 7 2.9874 1.8067 -2.3971 11 14 4.5414 3.4511 -3.9938 12 1 5.5245 4.5270 -3.7092 13 1 5.2066 2.3615 -4.7526 14 1 3.4221 4.0030 -4.7988 15 6 4.0279 3.3681 1.1578 16 8 3.7251 2.8228 2.2024 17 6 4.4451 4.7772 1.1586 18 6 4.5934 5.4269 2.3110 19 6 4.4964 4.6788 3.6156 20 6 4.8581 6.9104 2.3110 21 6 3.5568 7.6529 2.4738 22 6 2.8766 8.1083 1.3607 23 6 1.6827 8.7891 1.5094 24 6 1.1664 9.0165 2.7720 25 6 1.8430 8.5643 3.8879 26 6 3.0381 7.8748 3.7410 27 8 3.7028 7.4234 4.8372 28 6 3.1099 7.6884 6.1101 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 2.6760 1.4448 -3.2415 35 1 4.6314 5.2857 0.2242 36 1 3.4519 4.6134 3.9202 37 1 4.9017 3.6748 3.4897 38 1 5.0657 5.2070 4.3804 39 1 5.3241 7.1964 1.3680 40 1 5.5249 7.1605 3.1362 41 1 3.2781 7.9323 0.3737 42 1 1.1527 9.1446 0.6381 43 1 0.2336 9.5489 2.8855 44 1 1.4396 8.7426 4.8737 45 1 3.7406 7.2760 6.8976 46 1 3.0134 8.7652 6.2488 47 1 2.1236 7.2264 6.1548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255307143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:33 Heat of formation + Delta-G solvation = -116.721434 kcal Electronic energy + Delta-G solvation = -31333.262547 eV Core-core repulsion = 27061.228500 eV Total energy + Delta-G solvation = -4272.034047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39823 -41.16067 -40.21664 -38.35569 -37.53930 -36.71618 -36.17096 -33.45994 -32.62027 -31.02909 -30.62132 -28.60513 -28.39791 -27.74229 -27.45432 -26.30018 -23.13901 -22.93692 -22.23930 -21.25648 -20.14635 -18.88640 -18.45844 -18.23099 -18.02538 -17.27271 -17.12271 -17.00192 -16.66599 -16.53129 -16.14064 -15.95351 -15.51617 -15.34422 -14.93285 -14.76862 -14.52866 -14.28851 -14.24233 -14.05172 -13.78062 -13.45241 -13.34731 -13.11045 -12.99863 -12.88892 -12.81768 -12.75297 -12.59939 -12.52646 -12.15526 -12.03852 -11.94348 -11.90434 -11.74066 -11.59926 -11.47567 -10.93929 -10.24903 -9.99696 -9.78502 -9.66389 -9.03884 -8.33689 -5.94231 0.31315 0.51631 0.71342 1.48068 1.48579 1.61885 1.73502 1.97014 2.33423 2.44412 2.60091 2.82689 2.99220 3.23875 3.84765 3.89200 4.11013 4.14433 4.20689 4.26134 4.32244 4.32843 4.38407 4.40733 4.42830 4.48750 4.51613 4.61558 4.68694 4.70753 4.76341 4.77297 4.86959 4.90310 4.92999 4.99560 5.12045 5.27672 5.40094 5.43473 5.50492 5.62200 5.62905 5.72625 5.77497 5.87787 5.92369 6.37541 6.51259 7.08750 7.21076 7.53286 7.93873 8.72263 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.003527 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.375279 B = 7936.768872 C = 8769.603577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.489 3.511 4 O -0.544 6.544 5 C 0.154 3.846 6 N -0.439 5.439 7 C -0.340 4.340 8 H 0.115 0.885 9 C -0.009 4.009 10 N -0.908 5.908 11 Si 1.000 3.000 12 H -0.253 1.253 13 H -0.274 1.274 14 H -0.289 1.289 15 C 0.485 3.515 16 O -0.623 6.623 17 C -0.204 4.204 18 C -0.045 4.045 19 C -0.092 4.092 20 C -0.029 4.029 21 C -0.126 4.126 22 C -0.089 4.089 23 C -0.167 4.167 24 C -0.089 4.089 25 C -0.216 4.216 26 C 0.120 3.880 27 O -0.324 6.324 28 C 0.019 3.981 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.271 0.729 35 H 0.129 0.871 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 10.575 8.909 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.333 3.667 4 O -0.432 6.432 5 C 0.029 3.971 6 N -0.156 5.156 7 C -0.467 4.467 8 H 0.133 0.867 9 C -0.210 4.210 10 N -0.548 5.548 11 Si 0.824 3.176 12 H -0.176 1.176 13 H -0.200 1.200 14 H -0.216 1.216 15 C 0.280 3.720 16 O -0.513 6.513 17 C -0.225 4.225 18 C -0.047 4.047 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.185 4.185 24 C -0.107 4.107 25 C -0.235 4.235 26 C 0.075 3.925 27 O -0.238 6.238 28 C -0.076 4.076 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.134 0.866 46 H 0.088 0.912 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.351 10.353 9.261 13.895 hybrid contribution -0.712 0.016 -1.035 1.257 sum -1.064 10.369 8.226 13.278 Atomic orbital electron populations 1.23292 0.76306 1.04901 1.01073 1.86427 1.24040 1.33831 1.85002 1.24151 0.92704 0.80653 0.69199 1.90480 1.67459 1.37815 1.47466 1.20590 0.86888 0.85962 1.03700 1.43476 1.56770 1.08316 1.07051 1.20129 1.30751 1.13037 0.82751 0.86735 1.26206 0.94986 0.96872 1.02894 1.69821 1.28979 1.27860 1.28107 0.84754 0.77797 0.78533 0.76557 1.17610 1.19956 1.21575 1.18960 0.81812 0.88039 0.83226 1.90561 1.56341 1.72005 1.32379 1.22419 1.07149 0.93744 0.99173 1.22458 0.92484 0.95175 0.94615 1.20766 1.00695 0.99529 0.93834 1.19499 0.94400 0.88304 1.04433 1.19206 0.99101 1.03340 0.91038 1.21173 0.95233 0.96299 0.98040 1.21330 0.96729 1.01908 0.98562 1.21277 0.99736 0.97933 0.91704 1.21498 0.96279 1.04487 1.01193 1.19018 0.91952 0.94492 0.87056 1.86081 1.48809 1.74804 1.14098 1.23304 0.99926 1.02211 0.82145 0.93282 0.93674 0.84628 0.85245 0.89912 0.91893 0.85331 0.93839 0.91912 0.90922 0.88909 0.88607 0.84987 0.84328 0.83318 0.83336 0.86555 0.91197 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.96 10.56 -51.36 -0.54 -17.50 16 3 C 0.49 25.80 6.14 71.24 0.44 26.24 16 4 O -0.54 -32.29 15.84 21.96 0.35 -31.94 16 5 C 0.15 7.89 5.11 85.63 0.44 8.33 16 6 N -0.44 -23.26 2.19 -643.87 -1.41 -24.67 16 7 C -0.34 -17.40 9.07 84.11 0.76 -16.64 16 8 H 0.12 5.45 6.05 -2.91 -0.02 5.43 16 9 C -0.01 -0.47 5.14 84.96 0.44 -0.04 16 10 N -0.91 -48.06 8.93 21.68 0.19 -47.86 16 11 Si 1.00 39.60 29.56 68.60 2.03 41.62 16 12 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 H -0.29 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.49 25.29 7.15 86.53 0.62 25.90 16 16 O -0.62 -34.34 12.97 -4.23 -0.05 -34.40 16 17 C -0.20 -8.94 8.85 23.41 0.21 -8.73 16 18 C -0.04 -1.67 5.35 -17.60 -0.09 -1.77 16 19 C -0.09 -3.50 7.98 71.24 0.57 -2.93 16 20 C -0.03 -0.86 5.23 29.10 0.15 -0.71 16 21 C -0.13 -3.78 5.13 -19.77 -0.10 -3.88 16 22 C -0.09 -2.57 9.68 22.25 0.22 -2.36 16 23 C -0.17 -4.23 10.04 22.28 0.22 -4.00 16 24 C -0.09 -2.01 10.04 22.25 0.22 -1.79 16 25 C -0.22 -5.09 9.04 22.37 0.20 -4.89 16 26 C 0.12 3.34 6.66 22.51 0.15 3.49 16 27 O -0.32 -8.26 8.82 -92.49 -0.82 -9.07 16 28 C 0.02 0.30 9.81 113.37 1.11 1.42 16 29 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.13 6.59 6.19 -2.39 -0.01 6.57 16 33 H 0.08 4.00 7.65 -2.39 -0.02 3.98 16 34 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.13 5.32 6.22 -2.91 -0.02 5.30 16 36 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.06 2.70 6.03 -2.39 -0.01 2.68 16 38 H 0.07 2.28 7.76 -2.39 -0.02 2.26 16 39 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 40 H 0.10 2.52 7.63 -2.39 -0.02 2.50 16 41 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.62 6.30 -2.91 -0.02 2.61 16 45 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 47 H 0.05 0.89 7.68 -2.39 -0.02 0.87 16 Total: -1.00 -73.33 391.36 7.48 -65.85 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.99 Total: 37.78 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.75 Total: 20.19 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.22 Total: -72.54 kcal Atomic # 8 Polarization: -91.85 SS G_CDS: -1.07 Total: -92.91 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -73.33 7.48 -65.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255307143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.870 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds