Wall clock time and date at job start Wed Apr 1 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 O 1.42895 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.35742 * 117.00288 * 179.97438 * 4 3 2 6 6 C 1.39027 * 119.88364 * 179.97438 * 5 4 3 7 7 C 1.37657 * 120.11655 * 179.97438 * 6 5 4 8 8 C 1.40011 * 119.88015 * 359.97438 * 7 6 5 9 9 C 1.46947 * 120.11523 * 180.02562 * 8 7 6 10 10 C 1.35138 * 120.00051 * 133.40642 * 9 8 7 11 11 C 1.41798 * 119.99830 * 347.99302 * 10 9 8 12 12 O 1.21776 * 120.00499 * 353.70974 * 11 10 9 13 13 N 1.34782 * 119.99521 * 173.43878 * 11 10 9 14 14 C 1.36740 * 120.00227 * 355.56131 * 13 11 10 15 15 H 1.07998 * 120.00271 * 24.29888 * 14 13 11 16 16 C 1.39095 * 120.00191 * 204.30123 * 14 13 11 17 17 N 1.31341 * 119.99643 * 352.02615 * 16 14 13 18 18 Si 1.86800 * 120.00133 * 172.02916 * 16 14 13 19 19 H 1.48506 * 109.47254 * 59.99598 * 18 16 14 20 20 H 1.48499 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47343 * 299.99888 * 18 16 14 22 22 C 1.46505 * 119.99752 * 175.56748 * 13 11 10 23 23 C 1.50692 * 109.47334 * 89.99641 * 22 13 11 24 24 O 1.20825 * 120.00282 * 359.97438 * 23 22 13 25 25 O 1.34232 * 119.99991 * 179.97438 * 23 22 13 26 26 C 1.45205 * 116.99930 * 179.97438 * 25 23 22 27 27 C 1.40009 * 119.76909 * 0.26542 * 8 7 6 28 28 C 1.37657 * 119.87821 * 359.47646 * 27 8 7 29 29 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47223 * 300.00123 * 1 2 3 31 31 H 1.08996 * 109.47028 * 60.00358 * 1 2 3 32 32 H 1.09001 * 109.47703 * 239.99615 * 2 1 3 33 33 H 1.09005 * 109.47249 * 119.99720 * 2 1 3 34 34 H 1.08992 * 109.47077 * 59.99788 * 3 2 1 35 35 H 1.09005 * 109.46735 * 300.00034 * 3 2 1 36 36 H 1.07994 * 119.94372 * 359.97438 * 6 5 4 37 37 H 1.07994 * 120.06385 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.99894 * 313.40272 * 9 8 7 39 39 H 1.07998 * 119.99501 * 167.99242 * 10 9 8 40 40 H 0.97009 * 119.99399 * 185.02000 * 17 16 14 41 41 H 1.09003 * 109.46783 * 209.99534 * 22 13 11 42 42 H 1.09001 * 109.46682 * 329.99520 * 22 13 11 43 43 H 1.08998 * 109.46712 * 60.00427 * 26 25 23 44 44 H 1.08997 * 109.47197 * 180.02562 * 26 25 23 45 45 H 1.09001 * 109.47472 * 300.00389 * 26 25 23 46 46 H 1.08000 * 120.05853 * 179.72372 * 27 8 7 47 47 H 1.08000 * 119.94045 * 180.24833 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0853 2.6520 -0.0012 6 6 5.4738 2.7219 -0.0013 7 6 6.1038 3.9458 -0.0025 8 6 5.3436 5.1216 -0.0041 9 6 6.0107 6.4309 -0.0059 10 6 5.6009 7.3969 -0.8575 11 6 4.7113 7.0790 -1.9150 12 8 4.4066 5.9192 -2.1266 13 7 4.1987 8.0613 -2.6825 14 6 4.4637 9.3695 -2.3859 15 1 5.3504 9.6275 -1.8260 16 6 3.5911 10.3683 -2.8053 17 7 2.6001 10.0764 -3.6163 18 14 3.8288 12.1246 -2.2152 19 1 5.1649 12.6134 -2.6411 20 1 2.7752 12.9909 -2.8022 21 1 3.7359 12.1660 -0.7338 22 6 3.3575 7.7272 -3.8345 23 6 1.9160 7.6583 -3.4008 24 8 1.6214 7.8664 -2.2477 25 8 0.9592 7.3657 -4.2956 26 6 -0.4073 7.3160 -3.8070 27 6 3.9456 5.0455 0.0011 28 6 3.3257 3.8164 -0.0032 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.0592 1.8144 -0.0004 37 1 7.1824 3.9991 -0.0021 38 1 6.8285 6.6212 0.6734 39 1 5.9510 8.4109 -0.7326 40 1 2.0358 10.7834 -3.9666 41 1 3.4701 8.4939 -4.6011 42 1 3.6619 6.7617 -4.2388 43 1 -0.6805 8.2865 -3.3929 44 1 -1.0786 7.0697 -4.6297 45 1 -0.4885 6.5542 -3.0317 46 1 3.3546 5.9495 0.0043 47 1 2.2473 3.7566 -0.0033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255559494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:14 Heat of formation + Delta-G solvation = -90.801728 kcal Electronic energy + Delta-G solvation = -31186.293379 eV Core-core repulsion = 26915.383295 eV Total energy + Delta-G solvation = -4270.910084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.87974 -39.45228 -38.59051 -37.17567 -35.48029 -34.60909 -34.00927 -32.59872 -31.63297 -30.52578 -29.17363 -28.06891 -26.56922 -26.18811 -24.86073 -23.00577 -22.56864 -21.14295 -20.83730 -19.80142 -18.94257 -17.87328 -16.90883 -16.71425 -16.44250 -16.20356 -15.67888 -15.45900 -15.22620 -14.77407 -14.51001 -14.12819 -14.09583 -13.84915 -13.65289 -13.44586 -13.13514 -12.83397 -12.51317 -12.42610 -12.41551 -12.25808 -12.15504 -12.07782 -11.56916 -11.35092 -11.27557 -11.24355 -11.20042 -11.06766 -10.76532 -10.66421 -10.53228 -10.40212 -10.28163 -9.81699 -9.53582 -9.03859 -8.91333 -8.68247 -8.36517 -7.90955 -7.11448 -6.52983 -4.09670 1.42788 1.96856 2.46144 3.07540 3.14181 3.15150 3.38334 3.66319 3.75642 4.04275 4.34945 4.44493 4.76704 4.78707 4.79579 5.04393 5.09540 5.25966 5.31748 5.32308 5.40581 5.42183 5.53511 5.69202 5.75288 5.76464 5.80781 5.85414 5.88105 5.91253 5.94615 6.06093 6.14988 6.23928 6.31765 6.46543 6.55022 6.68158 6.77915 6.82904 6.95182 7.08933 7.22613 7.25770 7.32441 7.49126 7.61713 7.80272 8.19103 8.91209 9.15891 9.33178 9.76327 10.48991 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.003490 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.831226 B = 8020.904503 C = 9893.698507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.059 3.941 4 O -0.322 6.322 5 C 0.123 3.877 6 C -0.168 4.168 7 C -0.075 4.075 8 C -0.071 4.071 9 C -0.076 4.076 10 C -0.159 4.159 11 C 0.484 3.516 12 O -0.588 6.588 13 N -0.419 5.419 14 C -0.326 4.326 15 H 0.105 0.895 16 C 0.042 3.958 17 N -0.880 5.880 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.155 3.845 23 C 0.495 3.505 24 O -0.513 6.513 25 O -0.375 6.375 26 C 0.045 3.955 27 C 0.006 3.994 28 C -0.214 4.214 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.275 0.725 41 H 0.132 0.868 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.118 0.882 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -9.911 4.100 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.016 4.016 4 O -0.236 6.236 5 C 0.078 3.922 6 C -0.187 4.187 7 C -0.093 4.093 8 C -0.072 4.072 9 C -0.097 4.097 10 C -0.180 4.180 11 C 0.277 3.723 12 O -0.476 6.476 13 N -0.136 5.136 14 C -0.453 4.453 15 H 0.122 0.878 16 C -0.162 4.162 17 N -0.520 5.520 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.030 3.970 23 C 0.337 3.663 24 O -0.399 6.399 25 O -0.292 6.292 26 C -0.050 4.050 27 C -0.013 4.013 28 C -0.233 4.233 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.136 0.864 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.215 -10.452 4.253 11.350 hybrid contribution -0.531 1.537 0.153 1.634 sum -1.746 -8.915 4.406 10.097 Atomic orbital electron populations 1.21690 0.94458 1.02245 1.02344 1.21469 0.95897 0.95172 1.03415 1.22794 0.79129 0.98212 1.01512 1.85924 1.20778 1.27817 1.89097 1.19006 0.92159 0.83505 0.97481 1.20038 0.90973 0.98050 1.09607 1.20868 0.98869 0.90898 0.98668 1.18721 0.93024 0.92684 1.02747 1.22086 0.97625 0.91996 0.98014 1.22288 0.99905 0.99445 0.96336 1.17076 0.85341 0.85373 0.84462 1.90767 1.65272 1.19241 1.72304 1.43394 1.40926 1.06180 1.23094 1.19667 1.07618 0.81308 1.36726 0.87768 1.25338 0.93997 1.01021 0.95824 1.69521 1.18142 1.33996 1.30306 0.85866 0.78002 0.80634 0.79403 1.19748 1.20819 1.19654 1.20595 0.83558 1.01771 0.91084 1.23817 0.88439 0.70386 0.83678 1.90490 1.82825 1.45818 1.20724 1.86465 1.16698 1.82747 1.43313 1.22895 0.81023 1.01469 0.99599 1.20918 0.93472 0.96580 0.90305 1.20953 0.99259 0.92407 1.10679 0.91917 0.92410 0.92275 0.90951 0.91063 0.92308 0.92082 0.86177 0.86055 0.85928 0.85306 0.91380 0.85009 0.90610 0.92825 0.89703 0.93348 0.86429 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.21 6.30 -26.73 -0.17 -1.38 16 3 C 0.06 0.75 4.73 37.16 0.18 0.93 16 4 O -0.32 -5.09 10.13 -18.93 -0.19 -5.28 16 5 C 0.12 2.15 6.70 -39.00 -0.26 1.89 16 6 C -0.17 -2.78 9.97 -39.50 -0.39 -3.17 16 7 C -0.07 -1.24 9.79 -39.13 -0.38 -1.62 16 8 C -0.07 -1.34 4.33 -105.04 -0.46 -1.79 16 9 C -0.08 -1.33 9.78 -37.16 -0.36 -1.69 16 10 C -0.16 -3.19 9.05 -39.32 -0.36 -3.55 16 11 C 0.48 11.51 6.59 -14.90 -0.10 11.41 16 12 O -0.59 -14.83 11.91 5.12 0.06 -14.77 16 13 N -0.42 -10.34 2.10 -119.29 -0.25 -10.59 16 14 C -0.33 -7.94 9.06 -15.05 -0.14 -8.07 16 15 H 0.10 2.34 5.94 -52.49 -0.31 2.02 16 16 C 0.04 1.02 5.41 -17.44 -0.09 0.93 16 17 N -0.88 -22.17 8.13 55.50 0.45 -21.72 16 18 Si 0.93 19.19 29.56 -169.99 -5.03 14.17 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.16 3.74 5.21 -5.19 -0.03 3.71 16 23 C 0.49 12.25 5.85 36.00 0.21 12.46 16 24 O -0.51 -14.05 15.83 -18.75 -0.30 -14.35 16 25 O -0.37 -8.20 10.57 -39.26 -0.41 -8.62 16 26 C 0.04 0.79 10.56 101.05 1.07 1.86 16 27 C 0.01 0.12 6.77 -39.13 -0.26 -0.15 16 28 C -0.21 -3.98 9.01 -39.50 -0.36 -4.33 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 35 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.13 2.38 6.08 -52.49 -0.32 2.06 16 40 H 0.28 6.70 8.31 -40.82 -0.34 6.37 16 41 H 0.13 3.18 6.41 -51.93 -0.33 2.84 16 42 H 0.08 1.75 7.49 -51.93 -0.39 1.36 16 43 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 46 H 0.12 2.63 7.37 -52.49 -0.39 2.24 16 47 H 0.12 2.00 6.27 -52.49 -0.33 1.67 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -31.03 391.03 -7.96 -38.99 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.65 Total: 9.70 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.54 Total: 6.58 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.20 Total: -32.30 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.84 Total: -43.02 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.03 -7.96 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255559494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.817 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds