Wall clock time and date at job start Wed Apr 1 2020 05:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 O 1.42895 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.35742 * 117.00288 * 179.97438 * 4 3 2 6 6 C 1.39027 * 119.88364 * 179.97438 * 5 4 3 7 7 C 1.37657 * 120.11655 * 179.97438 * 6 5 4 8 8 C 1.40011 * 119.88015 * 359.97438 * 7 6 5 9 9 C 1.46947 * 120.11523 * 180.02562 * 8 7 6 10 10 C 1.35138 * 120.00051 * 133.40642 * 9 8 7 11 11 C 1.41798 * 119.99830 * 347.99302 * 10 9 8 12 12 O 1.21776 * 120.00499 * 353.70974 * 11 10 9 13 13 N 1.34782 * 119.99521 * 173.43878 * 11 10 9 14 14 C 1.36740 * 120.00227 * 355.56131 * 13 11 10 15 15 H 1.07998 * 120.00271 * 24.29888 * 14 13 11 16 16 C 1.39095 * 120.00191 * 204.30123 * 14 13 11 17 17 N 1.31341 * 119.99643 * 352.02615 * 16 14 13 18 18 Si 1.86800 * 120.00133 * 172.02916 * 16 14 13 19 19 H 1.48506 * 109.47254 * 59.99598 * 18 16 14 20 20 H 1.48499 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47343 * 299.99888 * 18 16 14 22 22 C 1.46505 * 119.99752 * 175.56748 * 13 11 10 23 23 C 1.50692 * 109.47334 * 89.99641 * 22 13 11 24 24 O 1.20825 * 120.00282 * 359.97438 * 23 22 13 25 25 O 1.34232 * 119.99991 * 179.97438 * 23 22 13 26 26 C 1.45205 * 116.99930 * 179.97438 * 25 23 22 27 27 C 1.40009 * 119.76909 * 0.26542 * 8 7 6 28 28 C 1.37657 * 119.87821 * 359.47646 * 27 8 7 29 29 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47223 * 300.00123 * 1 2 3 31 31 H 1.08996 * 109.47028 * 60.00358 * 1 2 3 32 32 H 1.09001 * 109.47703 * 239.99615 * 2 1 3 33 33 H 1.09005 * 109.47249 * 119.99720 * 2 1 3 34 34 H 1.08992 * 109.47077 * 59.99788 * 3 2 1 35 35 H 1.09005 * 109.46735 * 300.00034 * 3 2 1 36 36 H 1.07994 * 119.94372 * 359.97438 * 6 5 4 37 37 H 1.07994 * 120.06385 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.99894 * 313.40272 * 9 8 7 39 39 H 1.07998 * 119.99501 * 167.99242 * 10 9 8 40 40 H 0.97009 * 119.99399 * 185.02000 * 17 16 14 41 41 H 1.09003 * 109.46783 * 209.99534 * 22 13 11 42 42 H 1.09001 * 109.46682 * 329.99520 * 22 13 11 43 43 H 1.08998 * 109.46712 * 60.00427 * 26 25 23 44 44 H 1.08997 * 109.47197 * 180.02562 * 26 25 23 45 45 H 1.09001 * 109.47472 * 300.00389 * 26 25 23 46 46 H 1.08000 * 120.05853 * 179.72372 * 27 8 7 47 47 H 1.08000 * 119.94045 * 180.24833 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0853 2.6520 -0.0012 6 6 5.4738 2.7219 -0.0013 7 6 6.1038 3.9458 -0.0025 8 6 5.3436 5.1216 -0.0041 9 6 6.0107 6.4309 -0.0059 10 6 5.6009 7.3969 -0.8575 11 6 4.7113 7.0790 -1.9150 12 8 4.4066 5.9192 -2.1266 13 7 4.1987 8.0613 -2.6825 14 6 4.4637 9.3695 -2.3859 15 1 5.3504 9.6275 -1.8260 16 6 3.5911 10.3683 -2.8053 17 7 2.6001 10.0764 -3.6163 18 14 3.8288 12.1246 -2.2152 19 1 5.1649 12.6134 -2.6411 20 1 2.7752 12.9909 -2.8022 21 1 3.7359 12.1660 -0.7338 22 6 3.3575 7.7272 -3.8345 23 6 1.9160 7.6583 -3.4008 24 8 1.6214 7.8664 -2.2477 25 8 0.9592 7.3657 -4.2956 26 6 -0.4073 7.3160 -3.8070 27 6 3.9456 5.0455 0.0011 28 6 3.3257 3.8164 -0.0032 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.0592 1.8144 -0.0004 37 1 7.1824 3.9991 -0.0021 38 1 6.8285 6.6212 0.6734 39 1 5.9510 8.4109 -0.7326 40 1 2.0358 10.7834 -3.9666 41 1 3.4701 8.4939 -4.6011 42 1 3.6619 6.7617 -4.2388 43 1 -0.6805 8.2865 -3.3929 44 1 -1.0786 7.0697 -4.6297 45 1 -0.4885 6.5542 -3.0317 46 1 3.3546 5.9495 0.0043 47 1 2.2473 3.7566 -0.0033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255559494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:13 Heat of formation + Delta-G solvation = -106.476858 kcal Electronic energy + Delta-G solvation = -31186.973103 eV Core-core repulsion = 26915.383295 eV Total energy + Delta-G solvation = -4271.589809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48051 -41.02717 -40.28978 -38.57821 -37.26092 -36.46244 -35.00321 -34.02430 -33.46913 -31.91532 -30.80881 -29.56717 -27.95371 -27.45705 -26.61726 -24.51580 -23.75394 -22.57687 -22.03240 -21.57870 -20.66068 -19.18467 -18.56812 -18.45888 -18.27215 -17.27771 -17.25542 -17.09582 -16.86390 -16.38697 -16.19465 -15.60305 -15.35882 -15.08281 -15.03280 -14.95127 -14.52289 -14.32092 -14.17085 -13.99725 -13.89962 -13.47964 -13.33465 -13.28349 -13.02585 -12.99710 -12.88440 -12.68379 -12.44500 -12.42655 -12.18465 -12.13241 -11.99542 -11.69311 -11.58803 -11.55230 -11.41991 -10.92518 -10.42811 -10.33802 -9.94373 -9.64560 -8.57102 -8.34110 -5.97281 -0.04047 0.56506 1.00814 1.43757 1.50119 1.55012 1.78914 2.02143 2.23139 2.31927 2.66534 2.96727 3.05529 3.25062 3.83641 3.88957 3.95126 4.01428 4.03749 4.24628 4.25485 4.31899 4.36526 4.37019 4.38485 4.48201 4.49078 4.54428 4.64059 4.69122 4.73900 4.79712 4.88266 4.91514 5.05945 5.13855 5.15980 5.24733 5.30184 5.34963 5.43821 5.50271 5.63689 5.66907 5.78546 5.87039 5.92769 6.35099 6.48799 7.07376 7.26616 7.53075 7.95250 8.67569 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.003490 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.831226 B = 8020.904503 C = 9893.698507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.052 3.948 4 O -0.325 6.325 5 C 0.120 3.880 6 C -0.170 4.170 7 C -0.064 4.064 8 C -0.098 4.098 9 C -0.036 4.036 10 C -0.199 4.199 11 C 0.481 3.519 12 O -0.612 6.612 13 N -0.437 5.437 14 C -0.341 4.341 15 H 0.120 0.880 16 C -0.004 4.004 17 N -0.906 5.906 18 Si 0.998 3.002 19 H -0.254 1.254 20 H -0.289 1.289 21 H -0.275 1.275 22 C 0.157 3.843 23 C 0.496 3.504 24 O -0.548 6.548 25 O -0.379 6.379 26 C 0.040 3.960 27 C -0.014 4.014 28 C -0.228 4.228 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.143 0.857 40 H 0.271 0.729 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.133 0.867 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -11.056 5.099 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.023 4.023 4 O -0.239 6.239 5 C 0.075 3.925 6 C -0.188 4.188 7 C -0.082 4.082 8 C -0.098 4.098 9 C -0.057 4.057 10 C -0.220 4.220 11 C 0.275 3.725 12 O -0.501 6.501 13 N -0.155 5.155 14 C -0.468 4.468 15 H 0.137 0.863 16 C -0.204 4.204 17 N -0.546 5.546 18 Si 0.822 3.178 19 H -0.179 1.179 20 H -0.214 1.214 21 H -0.200 1.200 22 C 0.031 3.969 23 C 0.340 3.660 24 O -0.436 6.436 25 O -0.296 6.296 26 C -0.054 4.054 27 C -0.033 4.033 28 C -0.247 4.247 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.189 0.811 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.151 0.849 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.146 -11.614 5.239 12.742 hybrid contribution -1.023 1.646 -0.111 1.941 sum -0.877 -9.968 5.128 11.244 Atomic orbital electron populations 1.21697 0.93018 1.03432 1.02360 1.21485 0.97003 0.92988 1.03845 1.23056 0.77687 1.00362 1.01230 1.85932 1.22352 1.26891 1.88740 1.19206 0.92894 0.83573 0.96819 1.20471 0.90739 0.99320 1.08267 1.21265 1.00590 0.89838 0.96520 1.19001 0.92597 0.94333 1.03915 1.22608 0.96538 0.90315 0.96197 1.22254 1.01458 1.01039 0.97206 1.17728 0.85025 0.84894 0.84838 1.90736 1.66078 1.20093 1.73154 1.43576 1.41589 1.06692 1.23623 1.20073 1.08359 0.81380 1.37007 0.86272 1.26182 0.93774 1.04609 0.95842 1.69621 1.18988 1.34552 1.31475 0.84894 0.78417 0.76163 0.78314 1.17851 1.21445 1.20022 1.20547 0.83629 1.01408 0.91322 1.23945 0.89192 0.69498 0.83347 1.90455 1.83493 1.47602 1.22096 1.86430 1.18235 1.82109 1.42797 1.23243 0.79372 1.01070 1.01686 1.20743 0.94393 0.95755 0.92412 1.21024 0.99667 0.92641 1.11375 0.90127 0.92062 0.92656 0.90907 0.90208 0.91842 0.93186 0.83348 0.82303 0.81063 0.83974 0.91862 0.85523 0.90632 0.93793 0.84913 0.93363 0.89989 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -2.13 6.30 30.59 0.19 -1.94 16 3 C 0.05 1.30 4.73 71.98 0.34 1.64 16 4 O -0.32 -9.94 10.13 -90.66 -0.92 -10.86 16 5 C 0.12 4.11 6.70 22.65 0.15 4.26 16 6 C -0.17 -5.18 9.97 22.32 0.22 -4.96 16 7 C -0.06 -1.94 9.79 22.56 0.22 -1.72 16 8 C -0.10 -3.56 4.33 -20.14 -0.09 -3.65 16 9 C -0.04 -1.19 9.78 23.84 0.23 -0.95 16 10 C -0.20 -7.92 9.05 22.44 0.20 -7.71 16 11 C 0.48 23.41 6.59 85.12 0.56 23.97 16 12 O -0.61 -31.79 11.91 -4.59 -0.05 -31.85 16 13 N -0.44 -22.28 2.10 -649.50 -1.37 -23.65 16 14 C -0.34 -16.92 9.06 84.13 0.76 -16.16 16 15 H 0.12 5.34 5.94 -2.91 -0.02 5.32 16 16 C 0.00 -0.19 5.41 84.97 0.46 0.27 16 17 N -0.91 -47.00 8.13 21.69 0.18 -46.82 16 18 Si 1.00 39.61 29.56 68.60 2.03 41.63 16 19 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C 0.16 7.87 5.21 85.63 0.45 8.32 16 23 C 0.50 25.60 5.85 71.23 0.42 26.02 16 24 O -0.55 -31.41 15.83 21.97 0.35 -31.06 16 25 O -0.38 -16.97 10.57 -51.43 -0.54 -17.51 16 26 C 0.04 1.41 10.56 113.37 1.20 2.60 16 27 C -0.01 -0.60 6.77 22.56 0.15 -0.44 16 28 C -0.23 -8.68 9.01 22.32 0.20 -8.47 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.33 16 34 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 35 H 0.05 1.36 7.65 -2.38 -0.02 1.34 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 39 H 0.14 5.15 6.08 -2.91 -0.02 5.13 16 40 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 41 H 0.13 6.40 6.41 -2.39 -0.02 6.39 16 42 H 0.08 3.68 7.49 -2.39 -0.02 3.66 16 43 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 44 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 46 H 0.08 3.93 7.37 -2.91 -0.02 3.91 16 47 H 0.12 4.25 6.27 -2.91 -0.02 4.23 16 Total: -1.00 -70.07 391.03 7.04 -63.04 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.98 Total: 37.46 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.39 Total: 19.61 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.19 Total: -70.47 kcal Atomic # 8 Polarization: -90.11 SS G_CDS: -1.17 Total: -91.28 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -70.07 7.04 -63.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255559494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds