Wall clock time and date at job start Wed Apr 1 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.33444 * 2 1 4 4 O 1.44434 * 110.46517 * 122.31302 * 2 1 3 5 5 C 1.44429 * 105.27458 * 159.39251 * 4 2 1 6 6 C 1.54478 * 104.80044 * 319.48865 * 5 4 2 7 7 C 1.54475 * 110.37299 * 237.74671 * 2 1 3 8 8 O 1.42895 * 110.51486 * 335.86350 * 7 2 1 9 9 C 1.53001 * 110.50913 * 98.43627 * 7 2 1 10 10 N 1.46506 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99905 * 179.97438 * 10 9 7 12 12 O 1.21721 * 120.00091 * 0.02562 * 11 10 9 13 13 C 1.46256 * 119.99827 * 179.97438 * 11 10 9 14 14 C 1.35018 * 120.00071 * 180.02562 * 13 11 10 15 15 C 1.46966 * 119.99967 * 180.02562 * 14 13 11 16 16 C 1.40027 * 120.09922 * 179.97438 * 15 14 13 17 17 C 1.37597 * 119.89708 * 180.02562 * 16 15 14 18 18 C 1.39172 * 120.10166 * 0.02562 * 17 16 15 19 19 O 1.35570 * 119.89949 * 179.97438 * 18 17 16 20 20 C 1.34783 * 116.99945 * 354.44442 * 19 18 17 21 21 H 1.08002 * 119.99878 * 5.06019 * 20 19 18 22 22 C 1.38716 * 120.00280 * 185.05515 * 20 19 18 23 23 N 1.31513 * 119.99567 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47035 * 90.00261 * 24 22 20 26 26 H 1.48502 * 109.47170 * 210.00202 * 24 22 20 27 27 H 1.48497 * 109.46761 * 330.00381 * 24 22 20 28 28 C 1.39177 * 120.20358 * 0.27445 * 18 17 16 29 29 C 1.37606 * 120.10094 * 359.45161 * 28 18 17 30 30 H 1.09005 * 109.46861 * 182.24988 * 1 2 3 31 31 H 1.09000 * 109.47285 * 302.24660 * 1 2 3 32 32 H 1.08999 * 109.47265 * 62.25523 * 1 2 3 33 33 H 1.09003 * 110.36915 * 78.31971 * 5 4 2 34 34 H 1.08999 * 110.36891 * 200.54660 * 5 4 2 35 35 H 1.08998 * 110.51016 * 265.33213 * 6 5 4 36 36 H 1.08997 * 110.50944 * 142.62538 * 6 5 4 37 37 H 0.96706 * 114.00103 * 181.90452 * 8 7 2 38 38 H 1.09002 * 109.47362 * 60.00063 * 9 7 2 39 39 H 1.08996 * 109.47045 * 299.99878 * 9 7 2 40 40 H 0.97002 * 119.99589 * 0.02562 * 10 9 7 41 41 H 1.07996 * 119.99880 * 0.02562 * 13 11 10 42 42 H 1.07996 * 120.00019 * 359.97438 * 14 13 11 43 43 H 1.08003 * 120.04663 * 0.02562 * 16 15 14 44 44 H 1.07998 * 119.94781 * 179.97438 * 17 16 15 45 45 H 0.96998 * 119.99582 * 179.97438 * 23 22 20 46 46 H 1.07997 * 119.94918 * 179.72342 * 28 18 17 47 47 H 1.07990 * 120.05097 * 180.27369 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0350 -0.7233 1.1436 5 6 3.3898 -1.0846 0.7974 6 6 3.3194 -1.5027 -0.6881 7 6 2.0678 -0.7728 -1.2247 8 8 1.0972 -1.7131 -1.6892 9 6 2.4515 0.1969 -2.3442 10 7 2.9583 -0.5588 -3.4925 11 6 3.3587 0.0910 -4.6032 12 8 3.2996 1.3058 -4.6523 13 6 3.8652 -0.6633 -5.7493 14 6 4.2668 -0.0123 -6.8619 15 6 4.7752 -0.7704 -8.0137 16 6 5.1918 -0.0974 -9.1688 17 6 5.6666 -0.8114 -10.2449 18 6 5.7328 -2.2003 -10.1867 19 8 6.2008 -2.8997 -11.2496 20 6 6.4760 -2.2008 -12.3688 21 1 6.3995 -1.1235 -12.3652 22 6 6.8576 -2.8651 -13.5252 23 7 6.9504 -4.1770 -13.5296 24 14 7.2397 -1.8965 -15.0760 25 1 8.6827 -1.5463 -15.0980 26 1 6.9120 -2.7202 -16.2674 27 1 6.4282 -0.6531 -15.0954 28 6 5.3141 -2.8739 -9.0431 29 6 4.8430 -2.1679 -7.9599 30 1 -0.3633 -1.0269 0.0403 31 1 -0.3634 0.5483 0.8691 32 1 -0.3634 0.4784 -0.9095 33 1 4.0537 -0.2288 0.9197 34 1 3.7291 -1.9182 1.4123 35 1 3.1988 -2.5824 -0.7756 36 1 4.2115 -1.1727 -1.2203 37 1 1.3939 -2.2466 -2.4392 38 1 3.2251 0.8766 -1.9870 39 1 1.5745 0.7702 -2.6447 40 1 3.0051 -1.5269 -3.4534 41 1 3.9180 -1.7411 -5.7055 42 1 4.2136 1.0654 -6.9057 43 1 5.1403 0.9804 -9.2149 44 1 5.9877 -0.2932 -11.1364 45 1 7.2169 -4.6416 -14.3383 46 1 5.3630 -3.9520 -9.0040 47 1 4.5225 -2.6912 -7.0713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279405957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:17 Heat of formation + Delta-G solvation = -118.041742 kcal Electronic energy + Delta-G solvation = -28765.746563 eV Core-core repulsion = 24493.655264 eV Total energy + Delta-G solvation = -4272.091300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85130 -39.50104 -39.13449 -37.06333 -36.82407 -34.49451 -33.27872 -32.36560 -32.05717 -31.67703 -30.48191 -28.76187 -27.50799 -25.74142 -24.79927 -23.28485 -22.53324 -22.13573 -20.98559 -20.79877 -19.60230 -18.37815 -17.70164 -17.21124 -17.04495 -16.43137 -16.22348 -15.84144 -15.56454 -15.22847 -14.98514 -14.83522 -14.55350 -14.43260 -13.93442 -13.89518 -13.77408 -13.42030 -13.20944 -13.08718 -12.80146 -12.71121 -12.64336 -12.49019 -11.99153 -11.81855 -11.77561 -11.66897 -11.56173 -11.20534 -11.16042 -11.12174 -10.73128 -10.60702 -10.57373 -10.22933 -9.91856 -9.68009 -9.54358 -9.34269 -8.90275 -8.43421 -7.17263 -6.69364 -4.24123 0.98886 2.08733 2.48357 2.94329 3.00985 3.02096 3.07042 3.29035 3.46621 3.55542 3.78790 3.97284 4.10186 4.23511 4.45906 4.57563 4.68617 4.86944 4.88275 4.90737 4.93043 4.99221 5.13594 5.18806 5.19857 5.23721 5.32212 5.42021 5.47098 5.48438 5.56806 5.58187 5.61098 5.93890 5.96029 6.05889 6.11902 6.34853 6.38848 6.41579 6.54516 6.73669 6.86752 7.05403 7.07775 7.18117 7.22329 7.34871 7.58810 7.75871 8.18982 8.75324 9.41683 10.47085 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031465 B = 0.001496 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.654340 B =18709.427710 C =19107.892356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.084 0.916 4 O -0.365 6.365 5 C 0.047 3.953 6 C -0.188 4.188 7 C 0.094 3.906 8 O -0.538 6.538 9 C 0.103 3.897 10 N -0.735 5.735 11 C 0.559 3.441 12 O -0.555 6.555 13 C -0.288 4.288 14 C 0.043 3.957 15 C -0.202 4.202 16 C -0.034 4.034 17 C -0.242 4.242 18 C 0.167 3.833 19 O -0.161 6.161 20 C -0.394 4.394 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.265 1.265 28 C -0.200 4.200 29 C -0.042 4.042 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.376 0.624 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.396 0.604 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.275 0.725 46 H 0.121 0.879 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 5.190 22.582 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.030 3.970 3 H 0.101 0.899 4 O -0.284 6.284 5 C -0.030 4.030 6 C -0.225 4.225 7 C 0.052 3.948 8 O -0.344 6.344 9 C -0.022 4.022 10 N -0.388 5.388 11 C 0.351 3.649 12 O -0.435 6.435 13 C -0.309 4.309 14 C 0.024 3.976 15 C -0.203 4.203 16 C -0.052 4.052 17 C -0.262 4.262 18 C 0.110 3.890 19 O -0.062 6.062 20 C -0.469 4.469 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.483 5.483 24 Si 0.769 3.231 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.189 1.189 28 C -0.219 4.219 29 C -0.060 4.060 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.224 0.776 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.085 0.915 46 H 0.139 0.861 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.892 5.812 23.003 25.004 hybrid contribution 0.830 -0.288 -1.429 1.677 sum -7.062 5.523 21.574 23.363 Atomic orbital electron populations 1.21584 0.91874 1.03830 1.02116 1.22921 0.96842 0.94442 0.82829 0.89876 1.89206 1.26958 1.74670 1.37583 1.23340 0.84793 1.00340 0.94516 1.23747 0.98823 1.02403 0.97576 1.22827 0.88344 0.89564 0.94018 1.86630 1.41602 1.53006 1.53179 1.21885 1.00199 0.94352 0.85752 1.45756 1.67627 1.10104 1.15338 1.18415 0.76540 0.87393 0.82548 1.90790 1.55961 1.14172 1.82603 1.22371 1.13603 0.99887 0.95040 1.22300 0.85881 0.99217 0.90239 1.18449 1.13274 0.93131 0.95415 1.20995 0.93899 0.98580 0.91735 1.21103 1.10345 0.93900 1.00811 1.19615 0.90074 0.90604 0.88663 1.83901 1.67817 1.35995 1.18467 1.21489 1.47219 0.92054 0.86130 0.88493 1.25405 0.96198 0.96044 0.98803 1.70013 1.41777 1.07071 1.29453 0.85639 0.79215 0.78992 0.79244 1.19606 1.20012 1.18926 1.20153 1.08818 0.99735 0.93197 1.20867 0.95729 0.92805 0.96615 0.90738 0.92094 0.90964 0.91877 0.88655 0.89302 0.89289 0.77601 0.90511 0.90371 0.76935 0.85857 0.85932 0.86791 0.85091 0.91547 0.86112 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.98 37.16 0.33 -0.71 16 2 C 0.09 0.68 3.45 -25.96 -0.09 0.59 16 3 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 4 O -0.37 -3.36 11.35 -35.23 -0.40 -3.76 16 5 C 0.05 0.30 7.63 37.93 0.29 0.59 16 6 C -0.19 -1.10 6.19 -25.16 -0.16 -1.25 16 7 C 0.09 0.66 0.98 -89.05 -0.09 0.57 16 8 O -0.54 -3.96 11.44 -35.23 -0.40 -4.36 16 9 C 0.10 0.84 4.55 -4.04 -0.02 0.82 16 10 N -0.73 -6.34 5.08 -61.75 -0.31 -6.65 16 11 C 0.56 7.11 7.74 -13.04 -0.10 7.01 16 12 O -0.56 -9.16 16.23 5.17 0.08 -9.07 16 13 C -0.29 -3.61 9.41 -37.51 -0.35 -3.96 16 14 C 0.04 0.63 9.45 -37.19 -0.35 0.27 16 15 C -0.20 -3.30 5.87 -105.02 -0.62 -3.92 16 16 C -0.03 -0.58 9.78 -39.15 -0.38 -0.97 16 17 C -0.24 -4.90 9.14 -39.47 -0.36 -5.26 16 18 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 19 O -0.16 -4.30 9.74 0.73 0.01 -4.29 16 20 C -0.39 -10.29 9.48 30.91 0.29 -10.00 16 21 H 0.10 2.33 5.18 -52.49 -0.27 2.05 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -23.48 13.67 55.48 0.76 -22.72 16 24 Si 0.95 19.23 29.55 -169.99 -5.02 14.20 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 C -0.20 -3.87 9.97 -39.46 -0.39 -4.27 16 29 C -0.04 -0.68 9.40 -39.15 -0.37 -1.05 16 30 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.47 8.00 -51.93 -0.42 0.06 16 36 H 0.09 0.49 7.64 -51.93 -0.40 0.09 16 37 H 0.38 1.70 7.80 45.56 0.36 2.05 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 2.30 7.23 -40.82 -0.29 2.01 16 41 H 0.12 1.28 6.07 -52.49 -0.32 0.97 16 42 H 0.12 1.77 7.52 -52.49 -0.39 1.37 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.13 2.62 5.62 -52.49 -0.29 2.33 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 47 H 0.12 1.52 6.16 -52.49 -0.32 1.20 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -32.05 392.40 -7.76 -39.81 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.67 Total: 7.95 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.72 Total: -17.03 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.44 Total: -29.37 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.71 Total: -21.48 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.05 -7.76 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279405957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.228 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds