Wall clock time and date at job start Wed Apr 1 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.33444 * 2 1 4 4 O 1.44434 * 110.46517 * 122.31302 * 2 1 3 5 5 C 1.44429 * 105.27458 * 159.39251 * 4 2 1 6 6 C 1.54478 * 104.80044 * 319.48865 * 5 4 2 7 7 C 1.54475 * 110.37299 * 237.74671 * 2 1 3 8 8 O 1.42895 * 110.51486 * 335.86350 * 7 2 1 9 9 C 1.53001 * 110.50913 * 98.43627 * 7 2 1 10 10 N 1.46506 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99905 * 179.97438 * 10 9 7 12 12 O 1.21721 * 120.00091 * 0.02562 * 11 10 9 13 13 C 1.46256 * 119.99827 * 179.97438 * 11 10 9 14 14 C 1.35018 * 120.00071 * 180.02562 * 13 11 10 15 15 C 1.46966 * 119.99967 * 180.02562 * 14 13 11 16 16 C 1.40027 * 120.09922 * 179.97438 * 15 14 13 17 17 C 1.37597 * 119.89708 * 180.02562 * 16 15 14 18 18 C 1.39172 * 120.10166 * 0.02562 * 17 16 15 19 19 O 1.35570 * 119.89949 * 179.97438 * 18 17 16 20 20 C 1.34783 * 116.99945 * 354.44442 * 19 18 17 21 21 H 1.08002 * 119.99878 * 5.06019 * 20 19 18 22 22 C 1.38716 * 120.00280 * 185.05515 * 20 19 18 23 23 N 1.31513 * 119.99567 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47035 * 90.00261 * 24 22 20 26 26 H 1.48502 * 109.47170 * 210.00202 * 24 22 20 27 27 H 1.48497 * 109.46761 * 330.00381 * 24 22 20 28 28 C 1.39177 * 120.20358 * 0.27445 * 18 17 16 29 29 C 1.37606 * 120.10094 * 359.45161 * 28 18 17 30 30 H 1.09005 * 109.46861 * 182.24988 * 1 2 3 31 31 H 1.09000 * 109.47285 * 302.24660 * 1 2 3 32 32 H 1.08999 * 109.47265 * 62.25523 * 1 2 3 33 33 H 1.09003 * 110.36915 * 78.31971 * 5 4 2 34 34 H 1.08999 * 110.36891 * 200.54660 * 5 4 2 35 35 H 1.08998 * 110.51016 * 265.33213 * 6 5 4 36 36 H 1.08997 * 110.50944 * 142.62538 * 6 5 4 37 37 H 0.96706 * 114.00103 * 181.90452 * 8 7 2 38 38 H 1.09002 * 109.47362 * 60.00063 * 9 7 2 39 39 H 1.08996 * 109.47045 * 299.99878 * 9 7 2 40 40 H 0.97002 * 119.99589 * 0.02562 * 10 9 7 41 41 H 1.07996 * 119.99880 * 0.02562 * 13 11 10 42 42 H 1.07996 * 120.00019 * 359.97438 * 14 13 11 43 43 H 1.08003 * 120.04663 * 0.02562 * 16 15 14 44 44 H 1.07998 * 119.94781 * 179.97438 * 17 16 15 45 45 H 0.96998 * 119.99582 * 179.97438 * 23 22 20 46 46 H 1.07997 * 119.94918 * 179.72342 * 28 18 17 47 47 H 1.07990 * 120.05097 * 180.27369 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0350 -0.7233 1.1436 5 6 3.3898 -1.0846 0.7974 6 6 3.3194 -1.5027 -0.6881 7 6 2.0678 -0.7728 -1.2247 8 8 1.0972 -1.7131 -1.6892 9 6 2.4515 0.1969 -2.3442 10 7 2.9583 -0.5588 -3.4925 11 6 3.3587 0.0910 -4.6032 12 8 3.2996 1.3058 -4.6523 13 6 3.8652 -0.6633 -5.7493 14 6 4.2668 -0.0123 -6.8619 15 6 4.7752 -0.7704 -8.0137 16 6 5.1918 -0.0974 -9.1688 17 6 5.6666 -0.8114 -10.2449 18 6 5.7328 -2.2003 -10.1867 19 8 6.2008 -2.8997 -11.2496 20 6 6.4760 -2.2008 -12.3688 21 1 6.3995 -1.1235 -12.3652 22 6 6.8576 -2.8651 -13.5252 23 7 6.9504 -4.1770 -13.5296 24 14 7.2397 -1.8965 -15.0760 25 1 8.6827 -1.5463 -15.0980 26 1 6.9120 -2.7202 -16.2674 27 1 6.4282 -0.6531 -15.0954 28 6 5.3141 -2.8739 -9.0431 29 6 4.8430 -2.1679 -7.9599 30 1 -0.3633 -1.0269 0.0403 31 1 -0.3634 0.5483 0.8691 32 1 -0.3634 0.4784 -0.9095 33 1 4.0537 -0.2288 0.9197 34 1 3.7291 -1.9182 1.4123 35 1 3.1988 -2.5824 -0.7756 36 1 4.2115 -1.1727 -1.2203 37 1 1.3939 -2.2466 -2.4392 38 1 3.2251 0.8766 -1.9870 39 1 1.5745 0.7702 -2.6447 40 1 3.0051 -1.5269 -3.4534 41 1 3.9180 -1.7411 -5.7055 42 1 4.2136 1.0654 -6.9057 43 1 5.1403 0.9804 -9.2149 44 1 5.9877 -0.2932 -11.1364 45 1 7.2169 -4.6416 -14.3383 46 1 5.3630 -3.9520 -9.0040 47 1 4.5225 -2.6912 -7.0713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279405957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:16 Heat of formation + Delta-G solvation = -141.604309 kcal Electronic energy + Delta-G solvation = -28766.768313 eV Core-core repulsion = 24493.655264 eV Total energy + Delta-G solvation = -4273.113049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50395 -40.85860 -40.32078 -38.50502 -37.56744 -35.32617 -34.73883 -33.99960 -32.63262 -32.30244 -31.95889 -29.97011 -28.40966 -27.46030 -25.57737 -24.30856 -23.70055 -23.17769 -21.97915 -21.55380 -20.79453 -19.85301 -18.90758 -18.58048 -17.93000 -17.16032 -16.92748 -16.58872 -16.45791 -16.31459 -16.24752 -15.96528 -15.79734 -15.61684 -15.46495 -15.05519 -14.67265 -14.61919 -14.44275 -14.10238 -13.80032 -13.60102 -13.38056 -13.33209 -13.26369 -13.15323 -13.10904 -12.70718 -12.57343 -12.21517 -12.17726 -12.13217 -12.07801 -11.77632 -11.21428 -11.17770 -11.11365 -11.00634 -10.76454 -10.58934 -10.17976 -9.88656 -8.67908 -8.52278 -6.18400 -0.24849 0.59124 1.13140 1.35928 1.45721 1.52876 2.10960 2.15206 2.35255 2.76794 2.86514 3.02979 3.18149 3.43023 3.45114 3.53232 3.64975 3.83804 3.95434 4.09007 4.10070 4.16928 4.28822 4.32387 4.35089 4.37248 4.48136 4.60487 4.63100 4.67000 4.69533 4.81381 4.89010 4.95187 4.97623 5.01832 5.03162 5.19864 5.26152 5.30643 5.33590 5.37024 5.58654 5.64502 5.81351 5.81734 5.97438 6.11183 6.49130 6.66807 6.92227 7.22737 7.69312 8.69656 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031465 B = 0.001496 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.654340 B =18709.427710 C =19107.892356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.092 0.908 4 O -0.389 6.389 5 C 0.039 3.961 6 C -0.181 4.181 7 C 0.104 3.896 8 O -0.550 6.550 9 C 0.106 3.894 10 N -0.712 5.712 11 C 0.554 3.446 12 O -0.592 6.592 13 C -0.245 4.245 14 C 0.016 3.984 15 C -0.171 4.171 16 C -0.041 4.041 17 C -0.250 4.250 18 C 0.129 3.871 19 O -0.220 6.220 20 C -0.417 4.417 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.207 4.207 29 C -0.036 4.036 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.388 0.612 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 6.382 25.518 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 H 0.110 0.890 4 O -0.309 6.309 5 C -0.037 4.037 6 C -0.219 4.219 7 C 0.062 3.938 8 O -0.358 6.358 9 C -0.019 4.019 10 N -0.365 5.365 11 C 0.345 3.655 12 O -0.475 6.475 13 C -0.266 4.266 14 C -0.004 4.004 15 C -0.172 4.172 16 C -0.059 4.059 17 C -0.269 4.269 18 C 0.077 3.923 19 O -0.125 6.125 20 C -0.493 4.493 21 H 0.123 0.877 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.226 4.226 29 C -0.054 4.054 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.252 0.748 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.864 7.004 26.021 28.368 hybrid contribution 0.849 -0.471 -1.644 1.909 sum -8.015 6.533 24.377 26.480 Atomic orbital electron populations 1.21555 0.92132 1.02989 1.02506 1.23053 0.96805 0.95029 0.82996 0.89004 1.89185 1.28353 1.74983 1.38355 1.23537 0.83846 1.01171 0.95154 1.23720 0.98323 1.02793 0.97065 1.22676 0.88725 0.89298 0.93107 1.86631 1.42058 1.53180 1.53931 1.21889 0.99711 0.94583 0.85674 1.45563 1.65600 1.11096 1.14266 1.18502 0.76622 0.86889 0.83449 1.90799 1.57418 1.15927 1.83337 1.22741 1.08854 1.01345 0.93641 1.22172 0.88514 0.99338 0.90335 1.18780 1.09706 0.93368 0.95302 1.21323 0.93331 1.00113 0.91145 1.21199 1.10699 0.93322 1.01697 1.20209 0.91340 0.91862 0.88895 1.83883 1.71729 1.37192 1.19683 1.21891 1.47902 0.92622 0.86869 0.87742 1.26593 0.95992 0.97067 1.02015 1.70147 1.45416 1.09000 1.30422 0.84593 0.79304 0.77699 0.74709 1.18771 1.19582 1.17657 1.20441 1.08702 1.00285 0.93212 1.21297 0.94249 0.92854 0.96970 0.92111 0.91734 0.90592 0.91000 0.87707 0.88405 0.88457 0.76163 0.90504 0.91448 0.74820 0.82727 0.85865 0.83899 0.85889 0.91607 0.85897 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.98 71.98 0.65 -1.21 16 2 C 0.08 1.07 3.45 31.10 0.11 1.18 16 3 H 0.09 1.04 7.87 -2.39 -0.02 1.02 16 4 O -0.39 -6.42 11.35 -148.98 -1.69 -8.11 16 5 C 0.04 0.40 7.63 72.48 0.55 0.95 16 6 C -0.18 -1.46 6.19 31.61 0.20 -1.27 16 7 C 0.10 1.12 0.98 -9.78 -0.01 1.11 16 8 O -0.55 -6.36 11.44 -148.98 -1.70 -8.06 16 9 C 0.11 1.38 4.55 86.38 0.39 1.78 16 10 N -0.71 -9.04 5.08 -467.49 -2.38 -11.41 16 11 C 0.55 11.64 7.74 86.33 0.67 12.31 16 12 O -0.59 -17.62 16.23 -4.42 -0.07 -17.69 16 13 C -0.25 -4.79 9.41 23.61 0.22 -4.57 16 14 C 0.02 0.40 9.45 23.82 0.23 0.62 16 15 C -0.17 -5.00 5.87 -20.13 -0.12 -5.12 16 16 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 17 C -0.25 -10.25 9.14 22.34 0.20 -10.05 16 18 C 0.13 6.01 6.66 22.72 0.15 6.17 16 19 O -0.22 -12.56 9.74 -20.29 -0.20 -12.75 16 20 C -0.42 -23.22 9.48 67.93 0.64 -22.58 16 21 H 0.11 5.31 5.18 -2.91 -0.02 5.30 16 22 C -0.02 -0.97 5.49 84.85 0.47 -0.51 16 23 N -0.91 -53.83 13.67 21.62 0.30 -53.54 16 24 Si 1.02 41.07 29.55 68.60 2.03 43.10 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 27 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 28 C -0.21 -7.95 9.97 22.35 0.22 -7.72 16 29 C -0.04 -1.05 9.40 22.55 0.21 -0.84 16 30 H 0.06 1.00 7.49 -2.38 -0.02 0.99 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.65 8.00 -2.39 -0.02 0.63 16 36 H 0.10 0.64 7.64 -2.39 -0.02 0.62 16 37 H 0.39 1.94 7.80 -74.05 -0.58 1.37 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.41 2.51 7.23 -92.71 -0.67 1.84 16 41 H 0.16 2.07 6.07 -2.91 -0.02 2.05 16 42 H 0.12 3.11 7.52 -2.91 -0.02 3.09 16 43 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.12 5.13 5.62 -2.91 -0.02 5.12 16 45 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 47 H 0.16 3.22 6.16 -2.92 -0.02 3.20 16 Total: -1.00 -75.60 392.40 1.06 -74.54 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.22 Total: 24.81 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 5.00 Total: -30.87 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -2.08 Total: -64.95 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -3.66 Total: -46.62 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -75.60 1.06 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279405957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.065 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds