Wall clock time and date at job start Wed Apr 1 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.99063 * 2 1 4 4 O 1.43741 * 109.87643 * 238.91108 * 2 1 3 5 5 C 1.44385 * 106.97363 * 214.06134 * 4 2 1 6 6 C 1.54987 * 103.49225 * 40.06471 * 5 4 2 7 7 C 1.54099 * 109.87844 * 121.08078 * 2 1 3 8 8 O 1.42897 * 110.48893 * 240.26380 * 7 2 1 9 9 C 1.52995 * 110.48875 * 2.77924 * 7 2 1 10 10 N 1.46500 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21718 * 119.99508 * 359.97438 * 11 10 9 13 13 C 1.46251 * 119.99832 * 179.97438 * 11 10 9 14 14 C 1.35029 * 119.99464 * 179.97438 * 13 11 10 15 15 C 1.46963 * 119.99881 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.09909 * 359.72966 * 15 14 13 17 17 C 1.37594 * 119.89338 * 179.76352 * 16 15 14 18 18 C 1.39176 * 120.10505 * 0.48659 * 17 16 15 19 19 O 1.35573 * 119.89846 * 179.74699 * 18 17 16 20 20 C 1.34782 * 116.99735 * 174.47106 * 19 18 17 21 21 H 1.08001 * 120.00190 * 5.04602 * 20 19 18 22 22 C 1.38717 * 119.99791 * 185.05694 * 20 19 18 23 23 N 1.31510 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47128 * 89.99306 * 24 22 20 26 26 H 1.48496 * 109.47195 * 209.99470 * 24 22 20 27 27 H 1.48500 * 109.46815 * 329.99709 * 24 22 20 28 28 C 1.39174 * 120.20271 * 359.76188 * 18 17 16 29 29 C 1.37602 * 120.09707 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.47323 * 179.63742 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.63388 * 1 2 3 32 32 H 1.09000 * 109.47424 * 59.63440 * 1 2 3 33 33 H 1.09006 * 110.61223 * 158.56730 * 5 4 2 34 34 H 1.08998 * 110.61709 * 281.56013 * 5 4 2 35 35 H 1.08996 * 110.91059 * 204.77947 * 6 5 4 36 36 H 1.09001 * 110.94169 * 81.18136 * 6 5 4 37 37 H 0.96702 * 114.00035 * 180.02562 * 8 7 2 38 38 H 1.08998 * 109.47006 * 299.99588 * 9 7 2 39 39 H 1.09000 * 109.47695 * 60.00020 * 9 7 2 40 40 H 0.97004 * 119.99930 * 359.97438 * 10 9 7 41 41 H 1.07999 * 120.00786 * 359.97438 * 13 11 10 42 42 H 1.07995 * 120.00406 * 0.02562 * 14 13 11 43 43 H 1.08001 * 120.05212 * 359.97418 * 16 15 14 44 44 H 1.07999 * 119.94682 * 180.22794 * 17 16 15 45 45 H 0.97001 * 120.00302 * 179.97438 * 23 22 20 46 46 H 1.07996 * 119.95291 * 179.97438 * 28 18 17 47 47 H 1.08011 * 120.04500 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6980 -1.1576 5 6 3.2379 -1.3642 -0.7646 6 6 2.9195 -1.8915 0.6576 7 6 2.0539 -0.7481 1.2411 8 8 2.8484 0.1210 2.0507 9 6 0.8898 -1.3189 2.0534 10 7 1.4123 -2.0239 3.2266 11 6 0.5635 -2.6119 4.0929 12 8 -0.6371 -2.5568 3.9006 13 6 1.0852 -3.3161 5.2637 14 6 0.2348 -3.9048 6.1318 15 6 0.7590 -4.6129 7.3080 16 6 2.1402 -4.6834 7.5275 17 6 2.6261 -5.3433 8.6328 18 6 1.7477 -5.9489 9.5264 19 8 2.2313 -6.6024 10.6114 20 6 1.3289 -7.0681 11.4977 21 1 0.2729 -6.9857 11.2870 22 6 1.7567 -7.6529 12.6806 23 7 3.0426 -7.7535 12.9370 24 14 0.5061 -8.2976 13.9093 25 1 0.2021 -9.7193 13.6065 26 1 1.0614 -8.1918 15.2825 27 1 -0.7394 -7.4943 13.8157 28 6 0.3744 -5.8860 9.3096 29 6 -0.1209 -5.2244 8.2093 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3634 0.5082 0.8933 32 1 -0.3634 0.5195 -0.8867 33 1 3.4584 -2.1909 -1.4401 34 1 4.0684 -0.6589 -0.7356 35 1 3.8331 -2.0224 1.2375 36 1 2.3541 -2.8221 0.6106 37 1 3.2045 -0.2985 2.8458 38 1 0.2403 -0.5060 2.3780 39 1 0.3213 -2.0135 1.4351 40 1 2.3692 -2.0681 3.3795 41 1 2.1506 -3.3654 5.4340 42 1 -0.8305 -3.8559 5.9613 43 1 2.8228 -4.2175 6.8322 44 1 3.6910 -5.3949 8.8049 45 1 3.3417 -8.1621 13.7644 46 1 -0.3036 -6.3577 10.0054 47 1 -1.1868 -5.1765 8.0416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279405960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:20 Heat of formation + Delta-G solvation = -115.100818 kcal Electronic energy + Delta-G solvation = -28854.258616 eV Core-core repulsion = 24582.294844 eV Total energy + Delta-G solvation = -4271.963772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96515 -39.48763 -39.12503 -37.09438 -36.85375 -34.53251 -33.28025 -32.60647 -32.30626 -31.52202 -30.47829 -28.61927 -27.05389 -25.74477 -25.27134 -23.20537 -22.89682 -22.19021 -20.86966 -20.45061 -19.46629 -18.32494 -17.84397 -17.31611 -17.14154 -16.57153 -16.10815 -15.93174 -15.66936 -15.41966 -14.89411 -14.83223 -14.46267 -14.13753 -13.94938 -13.90973 -13.85220 -13.53517 -13.20585 -13.08157 -12.94609 -12.64844 -12.61553 -12.27915 -12.05100 -11.98595 -11.81348 -11.77008 -11.73072 -11.15994 -11.14686 -11.07778 -10.72731 -10.57479 -10.56507 -10.19689 -9.89279 -9.67168 -9.53940 -9.30208 -8.89787 -8.43043 -7.16734 -6.69044 -4.23834 0.99826 2.09098 2.49265 2.96135 3.01243 3.02323 3.07247 3.30755 3.40289 3.51109 3.79052 3.89700 3.99779 4.35263 4.46336 4.57245 4.70067 4.84094 4.88127 4.90142 4.97476 4.99458 5.09373 5.15834 5.20392 5.23334 5.29173 5.39932 5.46008 5.48624 5.57584 5.57893 5.61635 5.77380 5.96436 6.06428 6.13985 6.34240 6.39578 6.42046 6.54990 6.74128 6.87149 7.00148 7.08175 7.18613 7.22776 7.36317 7.59219 7.76155 8.20875 8.75647 9.42035 10.47397 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.001522 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.421651 B =18395.949643 C =18963.434719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.091 3.909 3 H 0.085 0.915 4 O -0.369 6.369 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.092 3.908 8 O -0.546 6.546 9 C 0.101 3.899 10 N -0.737 5.737 11 C 0.558 3.442 12 O -0.555 6.555 13 C -0.288 4.288 14 C 0.043 3.957 15 C -0.201 4.201 16 C -0.042 4.042 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.161 6.161 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.265 1.265 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.380 0.620 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.395 0.605 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 11.829 -21.336 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.103 0.897 4 O -0.288 6.288 5 C -0.026 4.026 6 C -0.222 4.222 7 C 0.050 3.950 8 O -0.352 6.352 9 C -0.023 4.023 10 N -0.390 5.390 11 C 0.351 3.649 12 O -0.435 6.435 13 C -0.309 4.309 14 C 0.023 3.977 15 C -0.202 4.202 16 C -0.060 4.060 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.062 6.062 20 C -0.469 4.469 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.483 5.483 24 Si 0.769 3.231 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.189 1.189 28 C -0.262 4.262 29 C -0.052 4.052 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.228 0.772 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.085 0.915 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.757 12.133 -21.856 25.009 hybrid contribution 0.257 -0.808 1.366 1.608 sum -0.500 11.326 -20.490 23.417 Atomic orbital electron populations 1.22082 0.92616 1.03639 1.03242 1.22542 0.95369 0.96294 0.82513 0.89712 1.88943 1.39787 1.67758 1.32318 1.23504 0.87806 0.96576 0.94751 1.23869 1.01142 0.99204 0.97993 1.22835 0.90376 0.89909 0.91835 1.86580 1.69449 1.40178 1.39027 1.22126 0.95774 0.97219 0.87147 1.45819 1.09915 1.57389 1.25879 1.18404 0.85885 0.77878 0.82745 1.90788 1.15378 1.61245 1.76062 1.22379 1.00375 1.09853 0.98260 1.22302 0.99246 0.86758 0.89378 1.18450 0.93392 1.09682 0.98712 1.20867 0.94007 0.95843 0.95312 1.20149 0.99140 1.05672 0.96948 1.19616 0.91924 0.89301 0.88116 1.83902 1.36082 1.59151 1.27059 1.21488 0.89030 1.38709 0.97656 0.88493 1.25403 0.97336 0.96553 0.97158 1.70011 1.13727 1.39442 1.25156 0.85641 0.79266 0.79349 0.78847 1.19609 1.20016 1.18927 1.21104 0.95369 1.08355 1.01335 1.20995 0.98261 0.93493 0.92466 0.91130 0.90411 0.91169 0.88543 0.91632 0.89222 0.89109 0.77163 0.90114 0.90014 0.77120 0.85882 0.85921 0.86453 0.86120 0.91549 0.85092 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.40 37.16 0.31 -0.82 16 2 C 0.09 0.73 3.88 -26.16 -0.10 0.63 16 3 H 0.09 0.70 7.97 -51.93 -0.41 0.29 16 4 O -0.37 -3.33 11.19 -35.23 -0.39 -3.72 16 5 C 0.05 0.33 7.72 38.21 0.29 0.62 16 6 C -0.18 -1.09 6.08 -24.72 -0.15 -1.24 16 7 C 0.09 0.65 1.07 -89.09 -0.10 0.56 16 8 O -0.55 -3.94 12.98 -35.23 -0.46 -4.39 16 9 C 0.10 0.86 3.53 -4.04 -0.01 0.85 16 10 N -0.74 -6.50 5.15 -61.76 -0.32 -6.82 16 11 C 0.56 7.20 7.74 -13.04 -0.10 7.10 16 12 O -0.55 -9.21 16.23 5.17 0.08 -9.12 16 13 C -0.29 -3.63 9.41 -37.50 -0.35 -3.98 16 14 C 0.04 0.62 9.45 -37.19 -0.35 0.27 16 15 C -0.20 -3.30 5.87 -105.03 -0.62 -3.92 16 16 C -0.04 -0.69 9.40 -39.15 -0.37 -1.06 16 17 C -0.20 -3.88 9.97 -39.47 -0.39 -4.27 16 18 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 19 O -0.16 -4.31 9.74 0.73 0.01 -4.30 16 20 C -0.39 -10.30 9.48 30.91 0.29 -10.01 16 21 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -23.50 13.67 55.48 0.76 -22.74 16 24 Si 0.95 19.25 29.55 -169.99 -5.02 14.23 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 28 C -0.24 -4.91 9.14 -39.47 -0.36 -5.27 16 29 C -0.03 -0.58 9.78 -39.15 -0.38 -0.97 16 30 H 0.07 0.52 6.67 -51.93 -0.35 0.18 16 31 H 0.08 0.52 6.87 -51.93 -0.36 0.16 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.38 1.63 7.76 45.56 0.35 1.98 16 38 H 0.08 0.78 6.74 -51.93 -0.35 0.43 16 39 H 0.08 0.77 6.78 -51.93 -0.35 0.41 16 40 H 0.39 2.33 7.22 -40.82 -0.29 2.03 16 41 H 0.12 1.29 6.06 -52.49 -0.32 0.97 16 42 H 0.12 1.78 7.52 -52.49 -0.39 1.39 16 43 H 0.12 1.52 6.16 -52.49 -0.32 1.20 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.13 2.63 5.62 -52.49 -0.29 2.33 16 47 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -31.97 388.25 -7.68 -39.64 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.44 Total: 8.41 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.74 Total: -17.02 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.44 Total: -29.57 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.76 Total: -21.54 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.97 -7.68 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279405960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.459 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds