Wall clock time and date at job start Wed Apr 1 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.99063 * 2 1 4 4 O 1.43741 * 109.87643 * 238.91108 * 2 1 3 5 5 C 1.44385 * 106.97363 * 214.06134 * 4 2 1 6 6 C 1.54987 * 103.49225 * 40.06471 * 5 4 2 7 7 C 1.54099 * 109.87844 * 121.08078 * 2 1 3 8 8 O 1.42897 * 110.48893 * 240.26380 * 7 2 1 9 9 C 1.52995 * 110.48875 * 2.77924 * 7 2 1 10 10 N 1.46500 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21718 * 119.99508 * 359.97438 * 11 10 9 13 13 C 1.46251 * 119.99832 * 179.97438 * 11 10 9 14 14 C 1.35029 * 119.99464 * 179.97438 * 13 11 10 15 15 C 1.46963 * 119.99881 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.09909 * 359.72966 * 15 14 13 17 17 C 1.37594 * 119.89338 * 179.76352 * 16 15 14 18 18 C 1.39176 * 120.10505 * 0.48659 * 17 16 15 19 19 O 1.35573 * 119.89846 * 179.74699 * 18 17 16 20 20 C 1.34782 * 116.99735 * 174.47106 * 19 18 17 21 21 H 1.08001 * 120.00190 * 5.04602 * 20 19 18 22 22 C 1.38717 * 119.99791 * 185.05694 * 20 19 18 23 23 N 1.31510 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47128 * 89.99306 * 24 22 20 26 26 H 1.48496 * 109.47195 * 209.99470 * 24 22 20 27 27 H 1.48500 * 109.46815 * 329.99709 * 24 22 20 28 28 C 1.39174 * 120.20271 * 359.76188 * 18 17 16 29 29 C 1.37602 * 120.09707 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.47323 * 179.63742 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.63388 * 1 2 3 32 32 H 1.09000 * 109.47424 * 59.63440 * 1 2 3 33 33 H 1.09006 * 110.61223 * 158.56730 * 5 4 2 34 34 H 1.08998 * 110.61709 * 281.56013 * 5 4 2 35 35 H 1.08996 * 110.91059 * 204.77947 * 6 5 4 36 36 H 1.09001 * 110.94169 * 81.18136 * 6 5 4 37 37 H 0.96702 * 114.00035 * 180.02562 * 8 7 2 38 38 H 1.08998 * 109.47006 * 299.99588 * 9 7 2 39 39 H 1.09000 * 109.47695 * 60.00020 * 9 7 2 40 40 H 0.97004 * 119.99930 * 359.97438 * 10 9 7 41 41 H 1.07999 * 120.00786 * 359.97438 * 13 11 10 42 42 H 1.07995 * 120.00406 * 0.02562 * 14 13 11 43 43 H 1.08001 * 120.05212 * 359.97418 * 16 15 14 44 44 H 1.07999 * 119.94682 * 180.22794 * 17 16 15 45 45 H 0.97001 * 120.00302 * 179.97438 * 23 22 20 46 46 H 1.07996 * 119.95291 * 179.97438 * 28 18 17 47 47 H 1.08011 * 120.04500 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6980 -1.1576 5 6 3.2379 -1.3642 -0.7646 6 6 2.9195 -1.8915 0.6576 7 6 2.0539 -0.7481 1.2411 8 8 2.8484 0.1210 2.0507 9 6 0.8898 -1.3189 2.0534 10 7 1.4123 -2.0239 3.2266 11 6 0.5635 -2.6119 4.0929 12 8 -0.6371 -2.5568 3.9006 13 6 1.0852 -3.3161 5.2637 14 6 0.2348 -3.9048 6.1318 15 6 0.7590 -4.6129 7.3080 16 6 2.1402 -4.6834 7.5275 17 6 2.6261 -5.3433 8.6328 18 6 1.7477 -5.9489 9.5264 19 8 2.2313 -6.6024 10.6114 20 6 1.3289 -7.0681 11.4977 21 1 0.2729 -6.9857 11.2870 22 6 1.7567 -7.6529 12.6806 23 7 3.0426 -7.7535 12.9370 24 14 0.5061 -8.2976 13.9093 25 1 0.2021 -9.7193 13.6065 26 1 1.0614 -8.1918 15.2825 27 1 -0.7394 -7.4943 13.8157 28 6 0.3744 -5.8860 9.3096 29 6 -0.1209 -5.2244 8.2093 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3634 0.5082 0.8933 32 1 -0.3634 0.5195 -0.8867 33 1 3.4584 -2.1909 -1.4401 34 1 4.0684 -0.6589 -0.7356 35 1 3.8331 -2.0224 1.2375 36 1 2.3541 -2.8221 0.6106 37 1 3.2045 -0.2985 2.8458 38 1 0.2403 -0.5060 2.3780 39 1 0.3213 -2.0135 1.4351 40 1 2.3692 -2.0681 3.3795 41 1 2.1506 -3.3654 5.4340 42 1 -0.8305 -3.8559 5.9613 43 1 2.8228 -4.2175 6.8322 44 1 3.6910 -5.3949 8.8049 45 1 3.3417 -8.1621 13.7644 46 1 -0.3036 -6.3577 10.0054 47 1 -1.1868 -5.1765 8.0416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279405960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:19 Heat of formation + Delta-G solvation = -139.003245 kcal Electronic energy + Delta-G solvation = -28855.295103 eV Core-core repulsion = 24582.294844 eV Total energy + Delta-G solvation = -4273.000259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61915 -40.86111 -40.32296 -38.50374 -37.63273 -35.36411 -34.73797 -34.00897 -33.19967 -32.08855 -31.95646 -29.91298 -27.97943 -27.38005 -25.98795 -24.38259 -23.68107 -23.46951 -22.10195 -21.16255 -20.62854 -19.79188 -18.89478 -18.52391 -18.29925 -17.19447 -16.90244 -16.69098 -16.45485 -16.40491 -16.27891 -16.11756 -15.91659 -15.61099 -15.29069 -14.86217 -14.75265 -14.60231 -14.44619 -14.10132 -13.85926 -13.60177 -13.50325 -13.32024 -13.19686 -13.14571 -12.92125 -12.70467 -12.59557 -12.56412 -12.23867 -12.20824 -12.13149 -11.66532 -11.21312 -11.12626 -11.11181 -11.04441 -10.73287 -10.58640 -10.15478 -9.88519 -8.67675 -8.52228 -6.18307 -0.24619 0.59295 1.13390 1.35938 1.45736 1.52850 2.11710 2.15228 2.35544 2.77232 2.86412 2.90582 3.18356 3.35110 3.40800 3.43138 3.73896 3.86166 3.95577 4.05782 4.09170 4.17745 4.25869 4.30148 4.35453 4.42404 4.48055 4.52658 4.59940 4.63452 4.67341 4.79299 4.90503 4.94931 4.95463 5.00006 5.03229 5.18663 5.20193 5.27092 5.32303 5.37562 5.58836 5.64624 5.80008 5.81767 5.97494 6.11322 6.49339 6.61878 6.92283 7.23443 7.69368 8.69690 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.001522 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.421651 B =18395.949643 C =18963.434719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 H 0.079 0.921 4 O -0.390 6.390 5 C 0.043 3.957 6 C -0.179 4.179 7 C 0.102 3.898 8 O -0.555 6.555 9 C 0.104 3.896 10 N -0.714 5.714 11 C 0.553 3.447 12 O -0.592 6.592 13 C -0.245 4.245 14 C 0.016 3.984 15 C -0.171 4.171 16 C -0.036 4.036 17 C -0.207 4.207 18 C 0.129 3.871 19 O -0.220 6.220 20 C -0.417 4.417 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.250 4.250 29 C -0.041 4.041 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 13.448 -24.084 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.097 0.903 4 O -0.310 6.310 5 C -0.033 4.033 6 C -0.217 4.217 7 C 0.060 3.940 8 O -0.364 6.364 9 C -0.020 4.020 10 N -0.367 5.367 11 C 0.345 3.655 12 O -0.474 6.474 13 C -0.265 4.265 14 C -0.004 4.004 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.226 4.226 18 C 0.077 3.923 19 O -0.125 6.125 20 C -0.493 4.493 21 H 0.122 0.878 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.269 4.269 29 C -0.059 4.059 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.251 0.749 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.181 0.819 44 H 0.141 0.859 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.983 13.796 -24.677 28.289 hybrid contribution 0.288 -0.915 1.563 1.834 sum -0.695 12.882 -23.114 26.470 Atomic orbital electron populations 1.22071 0.92383 1.03426 1.03572 1.22589 0.95689 0.96125 0.82857 0.90286 1.88926 1.40853 1.68109 1.33068 1.23693 0.87109 0.96998 0.95499 1.23868 1.01727 0.98344 0.97742 1.22656 0.90002 0.90104 0.91213 1.86580 1.69348 1.40633 1.39793 1.22118 0.96330 0.96705 0.86833 1.45620 1.10606 1.55580 1.24889 1.18514 0.85624 0.78106 0.83292 1.90797 1.17211 1.62541 1.76892 1.22745 1.01698 1.05781 0.96315 1.22175 0.99780 0.88840 0.89599 1.18778 0.93376 1.06847 0.98148 1.21299 0.94737 0.94616 0.94699 1.20439 0.99196 1.05614 0.97381 1.20210 0.93579 0.90411 0.88100 1.83884 1.36893 1.62671 1.29025 1.21889 0.89582 1.39382 0.98414 0.87753 1.26590 0.99400 0.96764 0.98919 1.70143 1.15973 1.42661 1.26205 0.84595 0.76822 0.78897 0.76006 1.18781 1.19569 1.17666 1.21200 0.94558 1.08842 1.02334 1.21321 1.00144 0.92889 0.91579 0.91541 0.90082 0.90923 0.87321 0.91203 0.87037 0.89279 0.75619 0.91033 0.90639 0.74905 0.82661 0.85902 0.81928 0.85866 0.91601 0.85898 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.40 71.98 0.60 -1.44 16 2 C 0.09 1.21 3.88 30.97 0.12 1.33 16 3 H 0.08 1.20 7.97 -2.39 -0.02 1.18 16 4 O -0.39 -6.37 11.19 -148.98 -1.67 -8.04 16 5 C 0.04 0.45 7.72 72.66 0.56 1.01 16 6 C -0.18 -1.48 6.08 31.90 0.19 -1.29 16 7 C 0.10 1.14 1.07 -9.80 -0.01 1.13 16 8 O -0.55 -6.04 12.98 -148.98 -1.93 -7.98 16 9 C 0.10 1.47 3.53 86.38 0.30 1.77 16 10 N -0.71 -9.42 5.15 -467.51 -2.41 -11.83 16 11 C 0.55 11.87 7.74 86.32 0.67 12.53 16 12 O -0.59 -17.88 16.23 -4.41 -0.07 -17.95 16 13 C -0.24 -4.83 9.41 23.61 0.22 -4.61 16 14 C 0.02 0.39 9.45 23.82 0.23 0.62 16 15 C -0.17 -5.01 5.87 -20.13 -0.12 -5.13 16 16 C -0.04 -1.05 9.40 22.55 0.21 -0.83 16 17 C -0.21 -7.94 9.97 22.34 0.22 -7.71 16 18 C 0.13 6.02 6.66 22.72 0.15 6.17 16 19 O -0.22 -12.55 9.74 -20.30 -0.20 -12.75 16 20 C -0.42 -23.22 9.48 67.93 0.64 -22.57 16 21 H 0.11 5.32 5.18 -2.91 -0.02 5.30 16 22 C -0.02 -0.98 5.49 84.86 0.47 -0.51 16 23 N -0.91 -53.83 13.67 21.62 0.30 -53.53 16 24 Si 1.02 41.11 29.55 68.60 2.03 43.14 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 27 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 28 C -0.25 -10.28 9.14 22.34 0.20 -10.08 16 29 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 30 H 0.07 0.91 6.67 -2.39 -0.02 0.89 16 31 H 0.08 0.97 6.87 -2.38 -0.02 0.95 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.44 8.09 -2.39 -0.02 0.42 16 36 H 0.09 0.81 7.85 -2.39 -0.02 0.79 16 37 H 0.39 1.60 7.76 -74.06 -0.57 1.03 16 38 H 0.07 1.20 6.74 -2.39 -0.02 1.18 16 39 H 0.08 1.23 6.78 -2.39 -0.02 1.21 16 40 H 0.41 2.53 7.22 -92.71 -0.67 1.86 16 41 H 0.16 2.08 6.06 -2.91 -0.02 2.06 16 42 H 0.12 3.14 7.52 -2.91 -0.02 3.12 16 43 H 0.16 3.21 6.16 -2.91 -0.02 3.19 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.12 5.14 5.62 -2.91 -0.02 5.13 16 47 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -75.46 388.25 0.73 -74.73 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.21 Total: 24.96 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.89 Total: -30.74 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -2.11 Total: -65.36 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -3.87 Total: -46.71 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -75.46 0.73 -74.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279405960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.272 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds