Wall clock time and date at job start Wed Apr 1 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 C 1.53002 * 109.46949 * 240.00453 * 2 1 3 5 5 O 1.45195 * 109.47633 * 120.00370 * 2 1 3 6 6 C 1.34237 * 116.99981 * 60.00135 * 5 2 1 7 7 O 1.20826 * 119.99697 * 359.97438 * 6 5 2 8 8 C 1.50695 * 120.00016 * 180.02562 * 6 5 2 9 9 C 1.53501 * 114.20538 * 179.97438 * 8 6 5 10 10 N 1.47066 * 87.98407 * 220.14370 * 9 8 6 11 11 C 1.34782 * 136.05656 * 207.08589 * 10 9 8 12 12 O 1.21596 * 119.99869 * 355.40195 * 11 10 9 13 13 C 1.47532 * 120.00047 * 175.40481 * 11 10 9 14 14 C 1.39673 * 120.19310 * 24.86947 * 13 11 10 15 15 C 1.37832 * 119.91341 * 179.97438 * 14 13 11 16 16 C 1.38570 * 120.32591 * 0.02620 * 15 14 13 17 17 C 1.38028 * 120.40002 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.07341 * 359.97438 * 17 16 15 19 19 O 1.35524 * 120.16010 * 179.97438 * 18 17 16 20 20 C 1.34811 * 116.99756 * 5.72751 * 19 18 17 21 21 H 1.08001 * 120.00648 * 5.42395 * 20 19 18 22 22 C 1.38699 * 119.99930 * 185.42634 * 20 19 18 23 23 N 1.31522 * 119.99683 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00148 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47268 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46980 * 120.00178 * 24 22 20 27 27 H 1.48504 * 109.46855 * 239.99988 * 24 22 20 28 28 C 1.47068 * 87.88462 * 27.34065 * 10 9 8 29 29 H 1.08998 * 109.47060 * 299.99574 * 1 2 3 30 30 H 1.09000 * 109.47370 * 59.99729 * 1 2 3 31 31 H 1.09004 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47071 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47213 * 300.00367 * 3 2 1 34 34 H 1.09003 * 109.46397 * 60.00501 * 3 2 1 35 35 H 1.09001 * 109.47222 * 299.99594 * 4 2 1 36 36 H 1.08995 * 109.47428 * 60.00171 * 4 2 1 37 37 H 1.09008 * 109.47181 * 179.97438 * 4 2 1 38 38 H 1.08999 * 113.27972 * 313.05850 * 8 6 5 39 39 H 1.08998 * 113.46526 * 105.36392 * 9 8 6 40 40 H 1.08997 * 113.46399 * 334.92518 * 9 8 6 41 41 H 1.08000 * 120.04553 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.83532 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.79445 * 179.69639 * 16 15 14 44 44 H 1.08002 * 119.96124 * 179.97438 * 17 16 15 45 45 H 0.97006 * 119.99465 * 179.97438 * 23 22 20 46 46 H 1.08994 * 113.46445 * 87.44140 * 28 10 9 47 47 H 1.09003 * 113.46423 * 217.87620 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9560 -2.5026 0.5080 8 6 2.1175 -2.7436 2.5438 9 6 1.6276 -4.1977 2.5843 10 7 1.4110 -4.0300 4.0292 11 6 1.3957 -4.8373 5.1084 12 8 1.5166 -6.0393 4.9702 13 6 1.2323 -4.2626 6.4573 14 6 0.5949 -3.0309 6.6236 15 6 0.4449 -2.4996 7.8865 16 6 0.9241 -3.1811 8.9938 17 6 1.5561 -4.3991 8.8447 18 6 1.7152 -4.9502 7.5804 19 8 2.3360 -6.1457 7.4319 20 6 2.6706 -6.8057 8.5588 21 1 2.3653 -6.4212 9.5208 22 6 3.4070 -7.9785 8.4829 23 7 3.7785 -8.4471 7.3114 24 14 3.8713 -8.8926 10.0444 25 1 3.3374 -8.1631 11.2224 26 1 3.2959 -10.2611 10.0065 27 1 5.3503 -8.9801 10.1455 28 6 1.2120 -2.5947 3.7775 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9562 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2496 38 1 3.1813 -2.6242 2.7495 39 1 2.4037 -4.9241 2.3431 40 1 0.7074 -4.3614 2.0235 41 1 0.2200 -2.4956 5.7637 42 1 -0.0478 -1.5470 8.0136 43 1 0.8063 -2.7545 9.9789 44 1 1.9272 -4.9240 9.7125 45 1 4.2938 -9.2672 7.2584 46 1 0.1822 -2.3360 3.5314 47 1 1.6340 -1.9555 4.5530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296300088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:34 Heat of formation + Delta-G solvation = -71.969245 kcal Electronic energy + Delta-G solvation = -30444.914318 eV Core-core repulsion = 26174.820872 eV Total energy + Delta-G solvation = -4270.093446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38910 -40.01939 -38.96108 -37.36047 -36.58759 -36.36642 -34.34047 -32.37437 -31.14519 -29.46879 -28.95002 -27.73349 -27.71409 -26.15628 -25.42485 -24.98195 -22.72101 -21.53660 -21.05530 -19.74302 -19.09966 -18.07474 -17.75543 -17.20518 -16.75949 -16.50593 -16.13713 -15.45017 -15.21622 -14.67929 -14.62756 -14.44991 -14.12383 -13.97718 -13.87886 -13.69023 -13.34793 -13.19678 -12.80467 -12.74434 -12.65867 -12.55418 -12.41705 -12.26629 -12.22755 -12.10681 -11.74980 -11.72397 -11.44690 -11.36631 -11.21074 -10.94123 -10.89375 -10.67408 -10.63849 -10.44714 -10.20227 -9.62999 -9.02608 -8.89418 -8.43173 -8.29945 -7.34753 -6.48252 -4.07504 1.69820 1.94343 2.28260 2.32878 3.10821 3.11163 3.13961 3.17384 3.59437 3.91395 3.99287 4.36143 4.42920 4.45279 4.53423 4.57973 4.65932 4.93860 5.06454 5.08796 5.14668 5.15101 5.20731 5.32709 5.36718 5.38397 5.42750 5.49952 5.50830 5.54072 5.63814 5.67453 5.73236 5.85643 5.92766 5.95230 5.96177 6.11191 6.19456 6.28372 6.53636 6.68541 6.91198 7.03663 7.22293 7.26701 7.60017 7.66030 7.90147 8.08386 8.89778 8.93980 9.63043 10.66507 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002386 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.483340 B =11733.027735 C =12753.014726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.346 6.346 6 C 0.482 3.518 7 O -0.498 6.498 8 C -0.133 4.133 9 C 0.128 3.872 10 N -0.652 5.652 11 C 0.595 3.405 12 O -0.498 6.498 13 C -0.220 4.220 14 C -0.042 4.042 15 C -0.229 4.229 16 C -0.050 4.050 17 C -0.236 4.236 18 C 0.190 3.810 19 O -0.132 6.132 20 C -0.400 4.400 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.837 5.837 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.275 1.275 28 C 0.120 3.880 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.272 0.728 46 H 0.086 0.914 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 19.323 -11.350 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.264 6.264 6 C 0.324 3.676 7 O -0.385 6.385 8 C -0.153 4.153 9 C 0.005 3.995 10 N -0.392 5.392 11 C 0.388 3.612 12 O -0.370 6.370 13 C -0.225 4.225 14 C -0.061 4.061 15 C -0.248 4.248 16 C -0.069 4.069 17 C -0.255 4.255 18 C 0.131 3.869 19 O -0.031 6.031 20 C -0.476 4.476 21 H 0.113 0.887 22 C -0.164 4.164 23 N -0.468 5.468 24 Si 0.767 3.233 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.004 4.004 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.725 17.942 -11.777 21.783 hybrid contribution 0.157 -0.224 0.666 0.720 sum -3.569 17.718 -11.111 21.216 Atomic orbital electron populations 1.22495 0.93944 1.04826 1.02800 1.22207 0.94471 0.92335 0.83078 1.21853 1.02296 0.92566 1.03075 1.22497 1.01770 1.03209 0.96600 1.86579 1.69612 1.25216 1.44963 1.23164 0.77119 0.80528 0.86752 1.90589 1.35049 1.69984 1.42921 1.23082 1.03505 0.96513 0.92175 1.22714 1.01650 0.93068 0.82055 1.49408 1.74364 1.08920 1.06482 1.17806 0.75933 0.85123 0.82344 1.90921 1.47628 1.13468 1.85029 1.18641 1.14403 0.98877 0.90564 1.20948 0.95404 0.92609 0.97141 1.20476 1.09966 1.01848 0.92547 1.20911 0.94417 0.93714 0.97858 1.21150 1.08472 0.98535 0.97368 1.19239 0.90175 0.85747 0.91776 1.84123 1.61446 1.23897 1.33635 1.21519 1.35506 1.05631 0.84920 0.88741 1.25398 0.95790 0.96400 0.98797 1.70116 1.32822 1.20442 1.23469 0.85634 0.78608 0.79325 0.79770 1.18932 1.19962 1.20010 1.22882 0.98556 0.84959 0.93973 0.91849 0.91095 0.89736 0.91417 0.90419 0.91348 0.89715 0.91093 0.91928 0.84369 0.89431 0.88808 0.86655 0.87197 0.87108 0.84973 0.91829 0.89641 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.37 37.15 0.31 -1.16 16 2 C 0.11 0.96 1.13 -90.62 -0.10 0.85 16 3 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 4 C -0.18 -1.50 8.37 37.16 0.31 -1.18 16 5 O -0.35 -3.49 9.89 -39.28 -0.39 -3.88 16 6 C 0.48 5.29 6.84 36.00 0.25 5.53 16 7 O -0.50 -6.27 11.45 -18.75 -0.21 -6.48 16 8 C -0.13 -1.47 4.62 -91.12 -0.42 -1.89 16 9 C 0.13 1.80 7.96 -8.50 -0.07 1.73 16 10 N -0.65 -11.04 3.68 -186.30 -0.68 -11.73 16 11 C 0.59 13.45 7.78 -12.47 -0.10 13.36 16 12 O -0.50 -13.91 16.36 -14.86 -0.24 -14.15 16 13 C -0.22 -4.82 5.86 -104.81 -0.61 -5.44 16 14 C -0.04 -0.73 8.75 -39.19 -0.34 -1.07 16 15 C -0.23 -3.71 10.02 -39.61 -0.40 -4.11 16 16 C -0.05 -0.88 10.03 -39.54 -0.40 -1.27 16 17 C -0.24 -5.03 9.12 -39.44 -0.36 -5.39 16 18 C 0.19 4.71 6.63 -38.60 -0.26 4.45 16 19 O -0.13 -3.91 8.14 -19.35 -0.16 -4.06 16 20 C -0.40 -11.29 9.44 30.90 0.29 -11.00 16 21 H 0.10 2.42 5.30 -52.49 -0.28 2.14 16 22 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 23 N -0.84 -25.21 13.67 55.48 0.76 -24.45 16 24 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 C 0.12 1.42 5.79 -8.37 -0.05 1.37 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.85 5.89 -51.93 -0.31 0.54 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.86 5.89 -51.93 -0.31 0.56 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.28 7.46 -51.93 -0.39 0.89 16 41 H 0.12 1.60 5.34 -52.49 -0.28 1.32 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 47 H 0.10 1.02 7.05 -51.93 -0.37 0.66 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -35.63 387.57 -8.25 -43.88 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.43 Total: 4.18 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.71 Total: -4.62 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.07 Total: -36.18 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.00 Total: -28.58 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.63 -8.25 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296300088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.091 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds