Wall clock time and date at job start Wed Apr 1 2020 04:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 C 1.53002 * 109.46949 * 240.00453 * 2 1 3 5 5 O 1.45195 * 109.47633 * 120.00370 * 2 1 3 6 6 C 1.34237 * 116.99981 * 60.00135 * 5 2 1 7 7 O 1.20826 * 119.99697 * 359.97438 * 6 5 2 8 8 C 1.50695 * 120.00016 * 180.02562 * 6 5 2 9 9 C 1.53501 * 114.20538 * 179.97438 * 8 6 5 10 10 N 1.47066 * 87.98407 * 220.14370 * 9 8 6 11 11 C 1.34782 * 136.05656 * 207.08589 * 10 9 8 12 12 O 1.21596 * 119.99869 * 355.40195 * 11 10 9 13 13 C 1.47532 * 120.00047 * 175.40481 * 11 10 9 14 14 C 1.39673 * 120.19310 * 24.86947 * 13 11 10 15 15 C 1.37832 * 119.91341 * 179.97438 * 14 13 11 16 16 C 1.38570 * 120.32591 * 0.02620 * 15 14 13 17 17 C 1.38028 * 120.40002 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.07341 * 359.97438 * 17 16 15 19 19 O 1.35524 * 120.16010 * 179.97438 * 18 17 16 20 20 C 1.34811 * 116.99756 * 5.72751 * 19 18 17 21 21 H 1.08001 * 120.00648 * 5.42395 * 20 19 18 22 22 C 1.38699 * 119.99930 * 185.42634 * 20 19 18 23 23 N 1.31522 * 119.99683 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00148 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47268 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46980 * 120.00178 * 24 22 20 27 27 H 1.48504 * 109.46855 * 239.99988 * 24 22 20 28 28 C 1.47068 * 87.88462 * 27.34065 * 10 9 8 29 29 H 1.08998 * 109.47060 * 299.99574 * 1 2 3 30 30 H 1.09000 * 109.47370 * 59.99729 * 1 2 3 31 31 H 1.09004 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47071 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47213 * 300.00367 * 3 2 1 34 34 H 1.09003 * 109.46397 * 60.00501 * 3 2 1 35 35 H 1.09001 * 109.47222 * 299.99594 * 4 2 1 36 36 H 1.08995 * 109.47428 * 60.00171 * 4 2 1 37 37 H 1.09008 * 109.47181 * 179.97438 * 4 2 1 38 38 H 1.08999 * 113.27972 * 313.05850 * 8 6 5 39 39 H 1.08998 * 113.46526 * 105.36392 * 9 8 6 40 40 H 1.08997 * 113.46399 * 334.92518 * 9 8 6 41 41 H 1.08000 * 120.04553 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.83532 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.79445 * 179.69639 * 16 15 14 44 44 H 1.08002 * 119.96124 * 179.97438 * 17 16 15 45 45 H 0.97006 * 119.99465 * 179.97438 * 23 22 20 46 46 H 1.08994 * 113.46445 * 87.44140 * 28 10 9 47 47 H 1.09003 * 113.46423 * 217.87620 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9560 -2.5026 0.5080 8 6 2.1175 -2.7436 2.5438 9 6 1.6276 -4.1977 2.5843 10 7 1.4110 -4.0300 4.0292 11 6 1.3957 -4.8373 5.1084 12 8 1.5166 -6.0393 4.9702 13 6 1.2323 -4.2626 6.4573 14 6 0.5949 -3.0309 6.6236 15 6 0.4449 -2.4996 7.8865 16 6 0.9241 -3.1811 8.9938 17 6 1.5561 -4.3991 8.8447 18 6 1.7152 -4.9502 7.5804 19 8 2.3360 -6.1457 7.4319 20 6 2.6706 -6.8057 8.5588 21 1 2.3653 -6.4212 9.5208 22 6 3.4070 -7.9785 8.4829 23 7 3.7785 -8.4471 7.3114 24 14 3.8713 -8.8926 10.0444 25 1 3.3374 -8.1631 11.2224 26 1 3.2959 -10.2611 10.0065 27 1 5.3503 -8.9801 10.1455 28 6 1.2120 -2.5947 3.7775 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9562 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2496 38 1 3.1813 -2.6242 2.7495 39 1 2.4037 -4.9241 2.3431 40 1 0.7074 -4.3614 2.0235 41 1 0.2200 -2.4956 5.7637 42 1 -0.0478 -1.5470 8.0136 43 1 0.8063 -2.7545 9.9789 44 1 1.9272 -4.9240 9.7125 45 1 4.2938 -9.2672 7.2584 46 1 0.1822 -2.3360 3.5314 47 1 1.6340 -1.9555 4.5530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296300088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:33 Heat of formation + Delta-G solvation = -94.855552 kcal Electronic energy + Delta-G solvation = -30445.906743 eV Core-core repulsion = 26174.820872 eV Total energy + Delta-G solvation = -4271.085871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37625 -41.35904 -40.44966 -38.79768 -38.04873 -37.71594 -35.03524 -34.34918 -32.69873 -30.81582 -30.56464 -28.33430 -28.24776 -27.53762 -27.11543 -26.21795 -24.09885 -23.10202 -22.12165 -20.63223 -20.45936 -19.89754 -18.94681 -18.54366 -18.01068 -17.55256 -17.26905 -16.81570 -16.47032 -16.32571 -15.96568 -15.67888 -15.52860 -15.35028 -15.10355 -14.92952 -14.70925 -14.32305 -14.27198 -14.04405 -13.73910 -13.56249 -13.42336 -13.32141 -13.04493 -13.02867 -12.89612 -12.82288 -12.74818 -12.54827 -12.43516 -12.35236 -12.13188 -12.09953 -11.83941 -11.47813 -11.36783 -11.08132 -10.86126 -10.69950 -9.95102 -9.75953 -9.05290 -8.47596 -6.17748 0.12031 0.70571 1.05248 1.32105 1.38672 1.42764 1.52243 1.86949 2.00539 2.14918 2.83340 2.94502 3.17982 3.40803 3.44300 3.64261 3.79553 3.83629 3.86203 3.99929 4.01405 4.09361 4.25039 4.32415 4.37539 4.47030 4.53748 4.57590 4.62644 4.65175 4.77535 4.81579 4.86475 4.90002 4.93122 4.95475 4.97206 5.07258 5.15799 5.17970 5.30602 5.33553 5.48967 5.52715 5.60587 5.68939 5.95069 6.15961 6.59781 6.75495 6.92832 7.25142 7.77182 8.74202 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002386 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.483340 B =11733.027735 C =12753.014726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.490 3.510 7 O -0.515 6.515 8 C -0.111 4.111 9 C 0.117 3.883 10 N -0.655 5.655 11 C 0.586 3.414 12 O -0.574 6.574 13 C -0.236 4.236 14 C -0.035 4.035 15 C -0.196 4.196 16 C -0.039 4.039 17 C -0.253 4.253 18 C 0.149 3.851 19 O -0.198 6.198 20 C -0.422 4.422 21 H 0.108 0.892 22 C -0.024 4.024 23 N -0.911 5.911 24 Si 1.024 2.976 25 H -0.244 1.244 26 H -0.271 1.271 27 H -0.267 1.267 28 C 0.121 3.879 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.152 0.848 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.271 0.729 46 H 0.114 0.886 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 24.737 -10.454 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.263 6.263 6 C 0.333 3.667 7 O -0.404 6.404 8 C -0.131 4.131 9 C -0.005 4.005 10 N -0.391 5.391 11 C 0.379 3.621 12 O -0.453 6.453 13 C -0.240 4.240 14 C -0.053 4.053 15 C -0.214 4.214 16 C -0.057 4.057 17 C -0.273 4.273 18 C 0.094 3.906 19 O -0.101 6.101 20 C -0.498 4.498 21 H 0.126 0.874 22 C -0.223 4.223 23 N -0.547 5.547 24 Si 0.842 3.158 25 H -0.167 1.167 26 H -0.197 1.197 27 H -0.191 1.191 28 C 0.000 4.000 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.169 0.831 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.174 0.826 42 H 0.184 0.816 43 H 0.174 0.826 44 H 0.142 0.858 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.384 23.506 -10.903 26.465 hybrid contribution 0.418 -1.404 0.200 1.479 sum -4.966 22.102 -10.703 25.054 Atomic orbital electron populations 1.22470 0.93631 1.03663 1.04044 1.22536 0.94871 0.93358 0.82241 1.21878 1.02360 0.90850 1.04305 1.22484 1.01825 1.02074 0.97598 1.86566 1.69482 1.24363 1.45918 1.22890 0.76679 0.80902 0.86218 1.90612 1.35821 1.70441 1.43494 1.22831 1.04141 0.93877 0.92259 1.22902 1.01821 0.95263 0.80559 1.49330 1.72187 1.11218 1.06403 1.18091 0.75323 0.84665 0.83986 1.90878 1.51252 1.16808 1.86319 1.19072 1.14819 1.00493 0.89663 1.21432 0.93641 0.90584 0.99656 1.21198 1.06369 1.02805 0.91042 1.21456 0.91878 0.91622 1.00753 1.21302 1.09799 1.00423 0.95748 1.20030 0.90588 0.85612 0.94338 1.84120 1.65053 1.26629 1.34343 1.22049 1.35773 1.06447 0.85524 0.87440 1.26785 0.95544 0.97223 1.02740 1.70305 1.35993 1.21761 1.26639 0.84478 0.78474 0.77545 0.75292 1.16679 1.19659 1.19140 1.23255 1.00489 0.81696 0.94601 0.91182 0.89336 0.92004 0.91369 0.88443 0.90881 0.92069 0.89208 0.91829 0.83059 0.90978 0.88227 0.82550 0.81563 0.82614 0.85761 0.91970 0.86861 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.37 71.98 0.60 -1.81 16 2 C 0.11 1.47 1.13 -10.79 -0.01 1.46 16 3 C -0.14 -1.19 8.85 71.98 0.64 -0.55 16 4 C -0.18 -2.65 8.37 71.98 0.60 -2.05 16 5 O -0.35 -6.06 9.89 -51.48 -0.51 -6.57 16 6 C 0.49 9.83 6.84 71.23 0.49 10.32 16 7 O -0.51 -12.47 11.45 21.96 0.25 -12.21 16 8 C -0.11 -2.27 4.62 -11.12 -0.05 -2.32 16 9 C 0.12 3.35 7.96 83.18 0.66 4.02 16 10 N -0.65 -22.19 3.68 -861.58 -3.17 -25.35 16 11 C 0.59 27.77 7.78 86.69 0.67 28.45 16 12 O -0.57 -35.07 16.36 15.24 0.25 -34.82 16 13 C -0.24 -10.41 5.86 -19.99 -0.12 -10.53 16 14 C -0.03 -1.06 8.75 22.52 0.20 -0.87 16 15 C -0.20 -5.08 10.02 22.25 0.22 -4.86 16 16 C -0.04 -1.18 10.03 22.30 0.22 -0.96 16 17 C -0.25 -10.72 9.12 22.36 0.20 -10.52 16 18 C 0.15 7.71 6.63 22.90 0.15 7.86 16 19 O -0.20 -12.72 8.14 -0.81 -0.01 -12.72 16 20 C -0.42 -25.62 9.44 67.93 0.64 -24.98 16 21 H 0.11 5.84 5.30 -2.91 -0.02 5.82 16 22 C -0.02 -1.45 5.49 84.85 0.47 -0.98 16 23 N -0.91 -59.93 13.67 21.62 0.30 -59.63 16 24 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 25 H -0.24 -9.51 7.11 99.48 0.71 -8.80 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 C 0.12 2.48 5.79 83.26 0.48 2.96 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.14 5.89 -2.38 -0.01 1.12 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 1.20 5.89 -2.39 -0.01 1.19 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.15 2.73 8.14 -2.39 -0.02 2.72 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.10 2.75 7.46 -2.39 -0.02 2.74 16 41 H 0.16 3.42 5.34 -2.91 -0.02 3.40 16 42 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 44 H 0.12 5.33 5.71 -2.91 -0.02 5.31 16 45 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 46 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 47 H 0.12 1.95 7.05 -2.39 -0.02 1.93 16 Total: -1.00 -91.44 387.57 6.21 -85.23 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.00 Total: 25.01 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 6.08 Total: -5.36 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.87 Total: -84.99 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -0.01 Total: -66.32 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -91.44 6.21 -85.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296300088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.628 kcal (2) G-P(sol) polarization free energy of solvation -91.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds