Wall clock time and date at job start Wed Apr 1 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99796 * 2 1 4 4 O 1.20821 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99517 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46822 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99780 * 263.12991 * 6 5 3 8 8 H 1.07995 * 119.99919 * 141.79088 * 7 6 5 9 9 C 1.38953 * 119.99954 * 321.79180 * 7 6 5 10 10 N 1.31418 * 120.00020 * 158.57419 * 9 7 6 11 11 Si 1.86797 * 120.00059 * 338.57025 * 9 7 6 12 12 H 1.48502 * 109.47313 * 95.90919 * 11 9 7 13 13 H 1.48505 * 109.47184 * 215.91100 * 11 9 7 14 14 H 1.48494 * 109.47225 * 335.90854 * 11 9 7 15 15 C 1.34770 * 120.00102 * 83.12760 * 6 5 3 16 16 O 1.21296 * 119.99855 * 0.02562 * 15 6 5 17 17 C 1.50702 * 120.00008 * 179.72205 * 15 6 5 18 18 H 1.09006 * 115.54702 * 34.61251 * 17 15 6 19 19 C 1.52999 * 117.50339 * 248.89957 * 17 15 6 20 20 C 1.52999 * 117.49764 * 180.27419 * 17 15 6 21 21 H 1.09000 * 117.49723 * 214.98265 * 20 17 15 22 22 C 1.50692 * 117.50208 * 359.97438 * 20 17 15 23 23 C 1.34519 * 125.78980 * 239.99913 * 22 20 17 24 24 C 1.41384 * 106.84149 * 179.97438 * 23 22 20 25 25 C 1.34511 * 106.84162 * 359.97438 * 24 23 22 26 26 C 1.50699 * 125.79104 * 179.97438 * 25 24 23 27 27 H 1.09007 * 115.54835 * 334.32855 * 26 25 24 28 28 C 1.53001 * 117.49840 * 188.62527 * 26 25 24 29 29 C 1.52998 * 117.50203 * 120.00178 * 26 25 24 30 30 H 1.08999 * 117.49906 * 359.97438 * 29 26 25 31 31 C 1.52997 * 117.49885 * 215.00020 * 29 26 25 32 32 O 1.34301 * 125.79113 * 59.68458 * 22 20 17 33 33 H 1.09005 * 109.47312 * 300.00125 * 1 2 3 34 34 H 1.08992 * 109.47229 * 59.99784 * 1 2 3 35 35 H 1.09002 * 109.47339 * 180.02562 * 1 2 3 36 36 H 1.08998 * 109.47228 * 60.00325 * 5 3 2 37 37 H 1.08994 * 109.47824 * 299.99953 * 5 3 2 38 38 H 0.97001 * 120.00084 * 179.97438 * 10 9 7 39 39 H 1.09004 * 117.49395 * 359.97438 * 19 17 15 40 40 H 1.08996 * 117.50215 * 145.01799 * 19 17 15 41 41 H 1.07997 * 126.57921 * 0.03073 * 23 22 20 42 42 H 1.08001 * 126.57622 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.50186 * 359.97438 * 28 26 25 44 44 H 1.09003 * 117.49743 * 145.02089 * 28 26 25 45 45 H 1.09006 * 109.46935 * 60.00402 * 31 29 26 46 46 H 1.09003 * 109.46786 * 179.97438 * 31 29 26 47 47 H 1.08991 * 109.47407 * 300.00152 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.3126 3.2971 -1.1774 8 1 4.0304 4.3258 -1.3460 9 6 5.0112 2.5992 -2.1551 10 7 4.9700 3.0013 -3.4055 11 14 6.0089 1.0894 -1.6919 12 1 5.1979 -0.1318 -1.9288 13 1 7.2392 1.0354 -2.5218 14 1 6.3829 1.1644 -0.2567 15 6 4.0384 3.3653 1.1600 16 8 3.7459 2.8190 2.2027 17 6 4.4717 4.8087 1.1613 18 1 4.1709 5.3906 0.2900 19 6 5.8209 5.1408 1.8016 20 6 4.5216 5.5301 2.5096 21 1 4.2541 6.5866 2.5253 22 6 4.1332 4.7432 3.7346 23 6 3.1251 5.0410 4.5740 24 6 3.1188 4.0442 5.5767 25 6 4.1231 3.1966 5.2898 26 6 4.4996 1.9743 6.0868 27 1 4.2267 1.9986 7.1419 28 6 5.7964 1.2560 5.7084 29 6 4.4449 0.6216 5.3740 30 1 4.1363 0.6157 4.3286 31 6 4.0115 -0.5934 6.1966 32 8 4.7310 3.6223 4.1703 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3634 -1.0277 0.0005 36 1 3.9563 0.7806 -0.8891 37 1 3.9557 0.7810 0.8907 38 1 5.4580 2.5143 -4.0879 39 1 6.3950 4.3152 2.2225 40 1 6.4083 5.9411 1.3516 41 1 2.4494 5.8799 4.4963 42 1 2.4383 3.9764 6.4125 43 1 6.3772 1.6673 4.8828 44 1 6.3771 0.8077 6.5146 45 1 3.0052 -0.4305 6.5827 46 1 4.0183 -1.4813 5.5644 47 1 4.7015 -0.7339 7.0284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:29 Heat of formation + Delta-G solvation = -31.739009 kcal Electronic energy + Delta-G solvation = -32137.413826 eV Core-core repulsion = 27869.064894 eV Total energy + Delta-G solvation = -4268.348932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02329 -40.03925 -38.96731 -37.57374 -36.41678 -35.58495 -34.73483 -32.38419 -32.06322 -29.83399 -29.07218 -27.84215 -26.73988 -25.14094 -23.72324 -22.97159 -21.38003 -21.15922 -20.74913 -20.44913 -19.36196 -18.94803 -17.46200 -17.33915 -16.90264 -16.20586 -15.87214 -15.65661 -15.27340 -15.18986 -14.67412 -14.54721 -14.29163 -13.75014 -13.57211 -13.37109 -13.10945 -13.01046 -12.91699 -12.56714 -12.47237 -12.26052 -12.05029 -11.86843 -11.76051 -11.69105 -11.52789 -11.47189 -11.35496 -11.02937 -10.72992 -10.55383 -10.35298 -10.23598 -10.09795 -10.03123 -9.94156 -9.85621 -9.33736 -9.17631 -8.77205 -7.99138 -7.44191 -6.57815 -4.19559 2.20444 2.85308 2.91805 2.95891 3.08958 3.16061 3.19410 3.39649 3.61709 3.97978 3.99280 4.11412 4.46071 4.64287 4.78380 4.88553 4.94864 5.04205 5.25588 5.32392 5.36630 5.38280 5.39050 5.44263 5.48583 5.59254 5.66421 5.67356 5.71209 5.75790 5.78071 5.79114 5.85212 5.97020 6.03391 6.09395 6.14569 6.21028 6.38347 6.43705 6.47080 6.51394 6.70277 6.84465 7.08256 7.12703 7.84009 7.93587 8.12688 8.38736 8.83374 9.18640 9.51207 10.52693 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009098 B = 0.004711 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.007121 B = 5941.986411 C = 6828.595902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.113 3.887 6 N -0.447 5.447 7 C -0.340 4.340 8 H 0.107 0.893 9 C 0.067 3.933 10 N -0.853 5.853 11 Si 0.860 3.140 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.521 3.479 16 O -0.565 6.565 17 C -0.134 4.134 18 H 0.133 0.867 19 C -0.140 4.140 20 C -0.074 4.074 21 H 0.135 0.865 22 C 0.070 3.930 23 C -0.228 4.228 24 C -0.209 4.209 25 C 0.016 3.984 26 C -0.074 4.074 27 H 0.125 0.875 28 C -0.167 4.167 29 C -0.141 4.141 30 H 0.113 0.887 31 C -0.120 4.120 32 O -0.141 6.141 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.277 0.723 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 -2.985 13.086 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.012 4.012 6 N -0.168 5.168 7 C -0.467 4.467 8 H 0.125 0.875 9 C -0.141 4.141 10 N -0.488 5.488 11 Si 0.686 3.314 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.180 1.180 15 C 0.311 3.689 16 O -0.447 6.447 17 C -0.154 4.154 18 H 0.151 0.849 19 C -0.177 4.177 20 C -0.093 4.093 21 H 0.153 0.847 22 C 0.018 3.982 23 C -0.247 4.247 24 C -0.228 4.228 25 C -0.035 4.035 26 C -0.092 4.092 27 H 0.143 0.857 28 C -0.204 4.204 29 C -0.159 4.159 30 H 0.132 0.868 31 C -0.177 4.177 32 O -0.036 6.036 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.443 -3.120 13.239 13.609 hybrid contribution -0.121 -0.575 -0.303 0.661 sum -0.564 -3.695 12.935 13.465 Atomic orbital electron populations 1.23126 0.77584 1.02792 1.02223 1.86522 1.22653 1.34577 1.84960 1.24768 0.92852 0.81195 0.72212 1.90611 1.66570 1.36271 1.43911 1.21340 0.86817 0.88433 1.04652 1.43265 1.58143 1.08141 1.07228 1.19059 1.36075 1.00103 0.91451 0.87524 1.25350 0.96101 0.97995 0.94661 1.69762 1.38547 1.40645 0.99826 0.87170 0.81056 0.82742 0.80437 1.19764 1.20645 1.17974 1.19392 0.79339 0.87372 0.82787 1.90607 1.52744 1.69953 1.31383 1.22200 1.01853 0.95480 0.95890 0.84886 1.22937 0.89835 1.03412 1.01529 1.20591 1.03531 0.97514 0.87625 0.84716 1.20853 0.95341 0.86339 0.95621 1.21176 1.01890 1.03438 0.98183 1.21188 1.01320 0.97674 1.02628 1.21002 0.96487 0.97393 0.88574 1.20441 1.03392 0.88041 0.97300 0.85680 1.23117 0.90468 1.03327 1.03522 1.22522 1.00185 0.92131 1.01042 0.86840 1.21363 1.01056 0.96251 0.99034 1.83908 1.50426 1.34922 1.34378 0.92378 0.92227 0.88746 0.87468 0.87602 0.91300 0.88254 0.87452 0.84537 0.84707 0.88267 0.88509 0.92192 0.91938 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.03 10.57 -39.27 -0.41 -7.44 16 3 C 0.45 10.05 7.98 36.00 0.29 10.34 16 4 O -0.49 -12.23 16.01 -18.75 -0.30 -12.53 16 5 C 0.11 2.53 4.49 -5.19 -0.02 2.50 16 6 N -0.45 -10.71 1.73 -116.10 -0.20 -10.91 16 7 C -0.34 -8.67 9.08 -14.93 -0.14 -8.81 16 8 H 0.11 2.86 6.80 -52.49 -0.36 2.50 16 9 C 0.07 1.70 5.27 -17.46 -0.09 1.61 16 10 N -0.85 -22.88 13.96 55.50 0.77 -22.10 16 11 Si 0.86 19.14 25.00 -169.99 -4.25 14.89 16 12 H -0.27 -5.77 6.72 56.52 0.38 -5.39 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 15 C 0.52 12.03 7.14 -10.99 -0.08 11.95 16 16 O -0.56 -13.60 12.33 -18.19 -0.22 -13.82 16 17 C -0.13 -2.59 5.29 -91.77 -0.49 -3.08 16 18 H 0.13 2.54 6.82 -51.93 -0.35 2.18 16 19 C -0.14 -2.27 9.87 -26.73 -0.26 -2.54 16 20 C -0.07 -1.23 6.24 -91.77 -0.57 -1.81 16 21 H 0.14 1.80 8.14 -51.93 -0.42 1.37 16 22 C 0.07 1.30 5.02 -35.63 -0.18 1.12 16 23 C -0.23 -4.00 10.81 -39.70 -0.43 -4.43 16 24 C -0.21 -3.52 10.81 -39.70 -0.43 -3.95 16 25 C 0.02 0.28 6.80 -35.63 -0.24 0.04 16 26 C -0.07 -1.03 5.96 -91.77 -0.55 -1.57 16 27 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 28 C -0.17 -2.18 9.81 -26.73 -0.26 -2.44 16 29 C -0.14 -1.94 6.11 -90.62 -0.55 -2.49 16 30 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 31 C -0.12 -1.27 10.19 37.16 0.38 -0.89 16 32 O -0.14 -2.76 7.96 -18.04 -0.14 -2.91 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.38 3.68 -51.93 -0.19 2.19 16 37 H 0.11 2.22 7.63 -51.93 -0.40 1.82 16 38 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.10 1.73 7.97 -51.93 -0.41 1.32 16 40 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.10 1.47 7.97 -51.93 -0.41 1.05 16 44 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -31.81 394.38 -8.14 -39.95 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.76 Total: 11.76 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.56 Total: -2.82 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.57 Total: -33.02 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.08 Total: -36.70 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.25 Total: 14.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.81 -8.14 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.212 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds