Wall clock time and date at job start Wed Apr 1 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99796 * 2 1 4 4 O 1.20821 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99517 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46822 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99780 * 263.12991 * 6 5 3 8 8 H 1.07995 * 119.99919 * 141.79088 * 7 6 5 9 9 C 1.38953 * 119.99954 * 321.79180 * 7 6 5 10 10 N 1.31418 * 120.00020 * 158.57419 * 9 7 6 11 11 Si 1.86797 * 120.00059 * 338.57025 * 9 7 6 12 12 H 1.48502 * 109.47313 * 95.90919 * 11 9 7 13 13 H 1.48505 * 109.47184 * 215.91100 * 11 9 7 14 14 H 1.48494 * 109.47225 * 335.90854 * 11 9 7 15 15 C 1.34770 * 120.00102 * 83.12760 * 6 5 3 16 16 O 1.21296 * 119.99855 * 0.02562 * 15 6 5 17 17 C 1.50702 * 120.00008 * 179.72205 * 15 6 5 18 18 H 1.09006 * 115.54702 * 34.61251 * 17 15 6 19 19 C 1.52999 * 117.50339 * 248.89957 * 17 15 6 20 20 C 1.52999 * 117.49764 * 180.27419 * 17 15 6 21 21 H 1.09000 * 117.49723 * 214.98265 * 20 17 15 22 22 C 1.50692 * 117.50208 * 359.97438 * 20 17 15 23 23 C 1.34519 * 125.78980 * 239.99913 * 22 20 17 24 24 C 1.41384 * 106.84149 * 179.97438 * 23 22 20 25 25 C 1.34511 * 106.84162 * 359.97438 * 24 23 22 26 26 C 1.50699 * 125.79104 * 179.97438 * 25 24 23 27 27 H 1.09007 * 115.54835 * 334.32855 * 26 25 24 28 28 C 1.53001 * 117.49840 * 188.62527 * 26 25 24 29 29 C 1.52998 * 117.50203 * 120.00178 * 26 25 24 30 30 H 1.08999 * 117.49906 * 359.97438 * 29 26 25 31 31 C 1.52997 * 117.49885 * 215.00020 * 29 26 25 32 32 O 1.34301 * 125.79113 * 59.68458 * 22 20 17 33 33 H 1.09005 * 109.47312 * 300.00125 * 1 2 3 34 34 H 1.08992 * 109.47229 * 59.99784 * 1 2 3 35 35 H 1.09002 * 109.47339 * 180.02562 * 1 2 3 36 36 H 1.08998 * 109.47228 * 60.00325 * 5 3 2 37 37 H 1.08994 * 109.47824 * 299.99953 * 5 3 2 38 38 H 0.97001 * 120.00084 * 179.97438 * 10 9 7 39 39 H 1.09004 * 117.49395 * 359.97438 * 19 17 15 40 40 H 1.08996 * 117.50215 * 145.01799 * 19 17 15 41 41 H 1.07997 * 126.57921 * 0.03073 * 23 22 20 42 42 H 1.08001 * 126.57622 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.50186 * 359.97438 * 28 26 25 44 44 H 1.09003 * 117.49743 * 145.02089 * 28 26 25 45 45 H 1.09006 * 109.46935 * 60.00402 * 31 29 26 46 46 H 1.09003 * 109.46786 * 179.97438 * 31 29 26 47 47 H 1.08991 * 109.47407 * 300.00152 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.3126 3.2971 -1.1774 8 1 4.0304 4.3258 -1.3460 9 6 5.0112 2.5992 -2.1551 10 7 4.9700 3.0013 -3.4055 11 14 6.0089 1.0894 -1.6919 12 1 5.1979 -0.1318 -1.9288 13 1 7.2392 1.0354 -2.5218 14 1 6.3829 1.1644 -0.2567 15 6 4.0384 3.3653 1.1600 16 8 3.7459 2.8190 2.2027 17 6 4.4717 4.8087 1.1613 18 1 4.1709 5.3906 0.2900 19 6 5.8209 5.1408 1.8016 20 6 4.5216 5.5301 2.5096 21 1 4.2541 6.5866 2.5253 22 6 4.1332 4.7432 3.7346 23 6 3.1251 5.0410 4.5740 24 6 3.1188 4.0442 5.5767 25 6 4.1231 3.1966 5.2898 26 6 4.4996 1.9743 6.0868 27 1 4.2267 1.9986 7.1419 28 6 5.7964 1.2560 5.7084 29 6 4.4449 0.6216 5.3740 30 1 4.1363 0.6157 4.3286 31 6 4.0115 -0.5934 6.1966 32 8 4.7310 3.6223 4.1703 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3634 -1.0277 0.0005 36 1 3.9563 0.7806 -0.8891 37 1 3.9557 0.7810 0.8907 38 1 5.4580 2.5143 -4.0879 39 1 6.3950 4.3152 2.2225 40 1 6.4083 5.9411 1.3516 41 1 2.4494 5.8799 4.4963 42 1 2.4383 3.9764 6.4125 43 1 6.3772 1.6673 4.8828 44 1 6.3771 0.8077 6.5146 45 1 3.0052 -0.4305 6.5827 46 1 4.0183 -1.4813 5.5644 47 1 4.7015 -0.7339 7.0284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:28 Heat of formation + Delta-G solvation = -47.243056 kcal Electronic energy + Delta-G solvation = -32138.086132 eV Core-core repulsion = 27869.064894 eV Total energy + Delta-G solvation = -4269.021238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.36248 -41.76737 -40.63017 -38.67840 -37.95211 -37.23729 -36.55789 -34.02024 -33.72647 -31.11446 -30.61854 -28.90443 -28.13555 -27.03861 -25.04477 -24.46914 -22.67611 -22.45424 -22.30838 -21.57684 -20.88526 -20.54250 -19.17616 -18.99273 -18.59249 -17.64554 -17.42159 -17.24348 -17.02684 -16.67179 -16.13666 -16.02681 -15.50321 -15.24116 -15.17913 -14.74069 -14.58095 -14.42954 -14.27435 -14.08725 -13.93421 -13.57852 -13.50950 -13.27737 -13.04178 -13.03605 -12.91141 -12.83214 -12.69098 -12.46878 -12.37080 -11.99745 -11.88109 -11.87228 -11.73710 -11.39675 -11.36631 -11.16850 -10.98556 -10.58131 -10.48314 -9.89290 -8.77975 -8.54649 -6.19595 0.85189 1.07970 1.15916 1.28787 1.38812 1.44555 1.73238 1.92040 2.13241 2.15951 2.46636 2.86208 2.90894 3.06386 3.52983 3.67011 3.75834 3.85836 3.87194 3.91040 3.92204 3.97157 4.08348 4.18458 4.24155 4.25565 4.32665 4.39317 4.43471 4.50341 4.58604 4.72172 4.78723 4.84001 4.87308 4.92795 5.01004 5.08281 5.14678 5.17363 5.19485 5.21611 5.28022 5.39061 5.41404 5.80706 6.00928 6.13445 6.50439 6.66643 6.89480 7.28684 7.66325 8.59491 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009098 B = 0.004711 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.007121 B = 5941.986411 C = 6828.595902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.452 3.548 4 O -0.524 6.524 5 C 0.107 3.893 6 N -0.458 5.458 7 C -0.340 4.340 8 H 0.082 0.918 9 C 0.031 3.969 10 N -0.892 5.892 11 Si 0.910 3.090 12 H -0.252 1.252 13 H -0.274 1.274 14 H -0.259 1.259 15 C 0.513 3.487 16 O -0.579 6.579 17 C -0.166 4.166 18 H 0.130 0.870 19 C -0.121 4.121 20 C -0.059 4.059 21 H 0.171 0.829 22 C 0.039 3.961 23 C -0.234 4.234 24 C -0.220 4.220 25 C 0.000 4.000 26 C -0.079 4.079 27 H 0.157 0.843 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.070 0.930 31 C -0.112 4.112 32 O -0.164 6.164 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.282 0.718 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -4.207 15.153 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.018 4.018 6 N -0.180 5.180 7 C -0.467 4.467 8 H 0.099 0.901 9 C -0.174 4.174 10 N -0.528 5.528 11 Si 0.734 3.266 12 H -0.178 1.178 13 H -0.200 1.200 14 H -0.183 1.183 15 C 0.304 3.696 16 O -0.462 6.462 17 C -0.187 4.187 18 H 0.148 0.852 19 C -0.159 4.159 20 C -0.077 4.077 21 H 0.188 0.812 22 C -0.012 4.012 23 C -0.253 4.253 24 C -0.239 4.239 25 C -0.051 4.051 26 C -0.097 4.097 27 H 0.175 0.825 28 C -0.195 4.195 29 C -0.165 4.165 30 H 0.088 0.912 31 C -0.169 4.169 32 O -0.060 6.060 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.251 -4.366 15.308 15.921 hybrid contribution -0.307 -0.216 -0.900 0.975 sum -0.558 -4.582 14.408 15.130 Atomic orbital electron populations 1.23551 0.74874 1.05909 1.02098 1.86490 1.25183 1.32449 1.84115 1.24690 0.92918 0.81619 0.71430 1.90590 1.67270 1.37563 1.45741 1.21398 0.87353 0.87947 1.05137 1.43347 1.58917 1.08723 1.07023 1.18873 1.36286 0.99449 0.92075 0.90070 1.25870 0.96562 1.00663 0.94283 1.69829 1.39735 1.42474 1.00739 0.86353 0.79984 0.80370 0.79875 1.17809 1.19979 1.18271 1.20040 0.78550 0.88733 0.82279 1.90591 1.53169 1.70787 1.31681 1.22167 1.05090 0.93630 0.97771 0.85223 1.23038 0.89091 1.03598 1.00140 1.20875 1.02920 0.98544 0.85357 0.81176 1.21311 0.96362 0.86790 0.96752 1.21571 1.01628 1.04080 0.98058 1.21570 1.01647 0.97369 1.03306 1.21786 0.96591 0.98476 0.88210 1.20738 1.04042 0.86636 0.98243 0.82538 1.23151 0.90121 1.02673 1.03576 1.22462 1.00991 0.93648 0.99382 0.91176 1.21348 1.01915 0.94457 0.99211 1.83891 1.51255 1.35504 1.35367 0.92568 0.92389 0.83981 0.87222 0.86632 0.90812 0.89779 0.84007 0.82692 0.82220 0.90861 0.85060 0.91599 0.91758 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -13.61 10.57 -51.45 -0.54 -14.15 16 3 C 0.45 20.43 7.98 71.23 0.57 21.00 16 4 O -0.52 -26.84 16.01 21.98 0.35 -26.49 16 5 C 0.11 4.84 4.49 85.63 0.38 5.22 16 6 N -0.46 -22.58 1.73 -639.61 -1.11 -23.69 16 7 C -0.34 -17.90 9.08 84.04 0.76 -17.14 16 8 H 0.08 4.59 6.80 -2.91 -0.02 4.57 16 9 C 0.03 1.61 5.27 84.93 0.45 2.06 16 10 N -0.89 -48.71 13.96 21.66 0.30 -48.41 16 11 Si 0.91 39.43 25.00 68.60 1.72 41.15 16 12 H -0.25 -10.13 6.72 99.48 0.67 -9.46 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 15 C 0.51 24.40 7.14 87.66 0.63 25.02 16 16 O -0.58 -28.79 12.33 19.61 0.24 -28.55 16 17 C -0.17 -6.57 5.29 -11.54 -0.06 -6.63 16 18 H 0.13 5.14 6.82 -2.38 -0.02 5.13 16 19 C -0.12 -3.91 9.87 30.60 0.30 -3.60 16 20 C -0.06 -1.93 6.24 -11.54 -0.07 -2.00 16 21 H 0.17 4.20 8.14 -2.39 -0.02 4.18 16 22 C 0.04 1.44 5.02 24.83 0.12 1.56 16 23 C -0.23 -8.08 10.81 22.19 0.24 -7.84 16 24 C -0.22 -7.21 10.81 22.19 0.24 -6.97 16 25 C 0.00 -0.01 6.80 24.83 0.17 0.16 16 26 C -0.08 -2.09 5.96 -11.54 -0.07 -2.16 16 27 H 0.16 3.08 8.14 -2.38 -0.02 3.06 16 28 C -0.16 -3.93 9.81 30.59 0.30 -3.63 16 29 C -0.15 -3.94 6.11 -10.80 -0.07 -4.01 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 C -0.11 -2.11 10.19 71.98 0.73 -1.38 16 32 O -0.16 -6.53 7.96 20.17 0.16 -6.37 16 33 H 0.06 1.60 8.13 -2.38 -0.02 1.58 16 34 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 35 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.11 4.85 3.68 -2.39 -0.01 4.84 16 37 H 0.12 4.93 7.63 -2.39 -0.02 4.91 16 38 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.08 2.97 7.97 -2.39 -0.02 2.95 16 40 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.16 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 44 H 0.13 2.31 8.05 -2.39 -0.02 2.29 16 45 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16 Total: -1.00 -72.07 394.38 7.89 -64.17 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: 0.95 Total: 40.68 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.83 Total: 1.66 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -0.81 Total: -72.10 kcal Atomic # 8 Polarization: -75.77 SS G_CDS: 0.21 Total: -75.56 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.72 Total: 41.15 kcal Total: -72.07 7.89 -64.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.929 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds