Wall clock time and date at job start Wed Apr 1 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00315 * 2 1 4 4 O 1.20830 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00208 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46826 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99881 * 269.99507 * 6 5 3 8 8 H 1.07996 * 119.99621 * 140.56150 * 7 6 5 9 9 C 1.38950 * 120.00445 * 320.56419 * 7 6 5 10 10 N 1.31405 * 120.00221 * 162.76145 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 342.76248 * 9 7 6 12 12 H 1.48504 * 109.47339 * 95.85952 * 11 9 7 13 13 H 1.48496 * 109.47353 * 215.86198 * 11 9 7 14 14 H 1.48506 * 109.47073 * 335.86336 * 11 9 7 15 15 C 1.34774 * 120.00144 * 90.00259 * 6 5 3 16 16 O 1.21287 * 119.99978 * 354.50364 * 15 6 5 17 17 C 1.50705 * 119.99801 * 174.50116 * 15 6 5 18 18 H 1.08993 * 115.55066 * 49.12472 * 17 15 6 19 19 C 1.52998 * 117.49496 * 263.41461 * 17 15 6 20 20 C 1.53003 * 60.00140 * 252.51390 * 19 17 15 21 21 H 1.09004 * 117.51957 * 252.51953 * 20 19 17 22 22 C 1.50701 * 117.49900 * 107.48997 * 20 19 17 23 23 C 1.34513 * 125.79168 * 171.37617 * 22 20 19 24 24 C 1.41379 * 106.84106 * 180.02562 * 23 22 20 25 25 C 1.34512 * 106.84413 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.79397 * 179.97438 * 25 24 23 27 27 H 1.09008 * 115.54463 * 25.72669 * 26 25 24 28 28 C 1.52996 * 117.49675 * 171.38933 * 26 25 24 29 29 C 1.52991 * 117.50188 * 240.01390 * 26 25 24 30 30 H 1.09004 * 117.50033 * 0.02562 * 29 26 25 31 31 C 1.53004 * 117.49791 * 145.02026 * 29 26 25 32 32 O 1.34306 * 125.78733 * 351.07621 * 22 20 19 33 33 H 1.08998 * 109.47246 * 300.00179 * 1 2 3 34 34 H 1.09005 * 109.47018 * 60.00668 * 1 2 3 35 35 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 36 36 H 1.08990 * 109.46891 * 299.99680 * 5 3 2 37 37 H 1.09004 * 109.46978 * 59.99998 * 5 3 2 38 38 H 0.97006 * 120.00082 * 180.02562 * 10 9 7 39 39 H 1.09003 * 117.50474 * 0.02562 * 19 17 15 40 40 H 1.09007 * 117.49706 * 145.02976 * 19 17 15 41 41 H 1.08003 * 126.57503 * 0.04548 * 23 22 20 42 42 H 1.08004 * 126.57887 * 179.97438 * 24 23 22 43 43 H 1.09004 * 117.49760 * 214.97980 * 28 26 25 44 44 H 1.08993 * 117.50735 * 0.02562 * 28 26 25 45 45 H 1.08999 * 109.46990 * 59.99977 * 31 29 26 46 46 H 1.08998 * 109.47211 * 180.02562 * 31 29 26 47 47 H 1.09001 * 109.47025 * 300.00083 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1766 3.3362 -1.1879 8 1 3.8608 4.3634 -1.2951 9 6 4.7804 2.6802 -2.2535 10 7 4.6694 3.1631 -3.4705 11 14 5.7501 1.1115 -1.9561 12 1 4.8793 -0.0644 -2.2097 13 1 6.9175 1.0698 -2.8728 14 1 6.2243 1.0819 -0.5491 15 6 4.1723 3.3267 1.1667 16 8 3.9047 2.7783 2.2149 17 6 4.7180 4.7314 1.1689 18 1 4.2254 5.4282 0.4908 19 6 6.2219 4.9047 1.3908 20 6 5.2364 5.2857 2.4974 21 1 5.0849 6.3473 2.6933 22 6 5.1622 4.3852 3.7035 23 6 4.4843 4.6421 4.8366 24 6 4.6879 3.5374 5.6951 25 6 5.4785 2.6717 5.0356 26 6 5.9634 1.3450 5.5606 27 1 5.3330 0.8808 6.3192 28 6 6.6874 0.4195 4.5808 29 6 7.4752 1.1408 5.6762 30 1 8.1193 1.9662 5.3728 31 6 7.9871 0.3007 6.8481 32 8 5.7571 3.1874 3.8271 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 -0.3634 -1.0276 0.0005 36 1 3.9556 0.7809 0.8908 37 1 3.9564 0.7804 -0.8892 38 1 5.0906 2.7049 -4.2145 39 1 6.8167 4.0026 1.5347 40 1 6.7190 5.7157 0.8585 41 1 3.8969 5.5230 5.0494 42 1 4.2864 3.4128 6.6900 43 1 6.5338 -0.6536 4.6950 44 1 6.8134 0.7702 3.5566 45 1 7.5647 -0.7023 6.7879 46 1 9.0745 0.2407 6.8044 47 1 7.6866 0.7657 7.7870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:36 Heat of formation + Delta-G solvation = -31.096524 kcal Electronic energy + Delta-G solvation = -31830.954706 eV Core-core repulsion = 27562.633634 eV Total energy + Delta-G solvation = -4268.321072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07598 -40.02725 -38.97016 -37.65178 -36.40335 -35.59454 -34.75225 -32.43850 -32.05462 -29.88900 -29.07255 -27.89999 -26.72929 -25.13279 -23.73765 -22.98345 -21.41675 -21.19769 -20.76758 -20.53877 -19.41182 -18.95779 -17.49876 -17.32091 -16.88451 -16.22946 -15.87887 -15.64757 -15.34342 -15.21968 -14.74599 -14.69789 -14.32552 -13.69592 -13.58433 -13.38431 -13.15159 -13.08805 -12.90794 -12.52271 -12.47038 -12.31384 -12.10113 -11.90541 -11.79773 -11.68778 -11.54353 -11.48466 -11.45473 -11.06767 -10.72153 -10.55657 -10.34186 -10.26463 -10.11539 -10.04797 -9.97724 -9.84516 -9.32231 -9.20911 -8.78508 -7.98671 -7.47518 -6.54989 -4.20544 2.17901 2.85185 2.93728 2.95644 3.05704 3.14837 3.17326 3.33157 3.61575 3.94225 3.98657 4.09599 4.46062 4.55708 4.79271 4.84155 4.87472 5.00608 5.20061 5.24507 5.32824 5.37957 5.39052 5.45005 5.48759 5.55796 5.59453 5.62864 5.64650 5.71545 5.78966 5.80993 5.82917 5.88971 5.99065 6.07811 6.14085 6.20519 6.23592 6.37513 6.44759 6.50507 6.66698 6.85568 7.05550 7.13556 7.78154 7.94702 8.14953 8.40483 8.84096 9.18190 9.50790 10.55575 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.004128 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.372578 B = 6781.281390 C = 7171.580194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.449 3.551 4 O -0.487 6.487 5 C 0.112 3.888 6 N -0.447 5.447 7 C -0.334 4.334 8 H 0.107 0.893 9 C 0.066 3.934 10 N -0.857 5.857 11 Si 0.863 3.137 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.520 3.480 16 O -0.565 6.565 17 C -0.128 4.128 18 H 0.132 0.868 19 C -0.138 4.138 20 C -0.077 4.077 21 H 0.136 0.864 22 C 0.071 3.929 23 C -0.225 4.225 24 C -0.203 4.203 25 C 0.013 3.987 26 C -0.070 4.070 27 H 0.127 0.873 28 C -0.164 4.164 29 C -0.147 4.147 30 H 0.105 0.895 31 C -0.120 4.120 32 O -0.152 6.152 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.276 0.724 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -3.551 12.981 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.013 4.013 6 N -0.168 5.168 7 C -0.461 4.461 8 H 0.125 0.875 9 C -0.142 4.142 10 N -0.492 5.492 11 Si 0.690 3.310 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.180 1.180 15 C 0.310 3.690 16 O -0.447 6.447 17 C -0.149 4.149 18 H 0.150 0.850 19 C -0.175 4.175 20 C -0.095 4.095 21 H 0.153 0.847 22 C 0.020 3.980 23 C -0.244 4.244 24 C -0.223 4.223 25 C -0.037 4.037 26 C -0.088 4.088 27 H 0.145 0.855 28 C -0.201 4.201 29 C -0.165 4.165 30 H 0.123 0.877 31 C -0.178 4.178 32 O -0.047 6.047 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.237 -3.669 13.058 13.945 hybrid contribution -0.241 -0.626 -0.315 0.742 sum 2.996 -4.296 12.743 13.777 Atomic orbital electron populations 1.23128 0.77591 1.02794 1.02240 1.86520 1.22660 1.34629 1.84977 1.24754 0.92828 0.81199 0.72306 1.90613 1.66536 1.36233 1.43780 1.21357 0.86869 0.88630 1.04449 1.43295 1.58699 1.08297 1.06530 1.19069 1.39764 0.99827 0.87421 0.87550 1.25368 0.95819 0.98115 0.94848 1.69705 1.40531 1.40417 0.98575 0.87114 0.80844 0.83148 0.79856 1.19745 1.20732 1.18033 1.19437 0.79636 0.87011 0.82949 1.90613 1.54445 1.68252 1.31402 1.22085 0.98203 0.96912 0.97687 0.85043 1.22928 0.91592 1.03629 0.99399 1.20632 1.06773 0.96809 0.85286 0.84672 1.20892 0.97304 0.84344 0.95434 1.21159 1.06616 1.01709 0.94908 1.21204 1.04234 0.95623 1.01212 1.20976 1.02513 0.95884 0.84339 1.20440 0.94638 0.91372 1.02345 0.85538 1.23141 1.02713 0.97911 0.96301 1.22491 0.92874 1.02104 0.99028 0.87714 1.21363 1.00996 0.98840 0.96552 1.83862 1.59346 1.29138 1.32390 0.92369 0.92199 0.88754 0.87225 0.88165 0.91314 0.88320 0.87399 0.84453 0.84594 0.88286 0.88081 0.92431 0.92031 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.13 10.56 -39.24 -0.41 -7.55 16 3 C 0.45 10.17 8.02 36.01 0.29 10.46 16 4 O -0.49 -12.31 16.18 -18.75 -0.30 -12.61 16 5 C 0.11 2.54 4.69 -5.19 -0.02 2.51 16 6 N -0.45 -10.79 1.65 -116.10 -0.19 -10.99 16 7 C -0.33 -8.58 9.04 -14.93 -0.13 -8.71 16 8 H 0.11 2.89 7.19 -52.49 -0.38 2.52 16 9 C 0.07 1.70 5.38 -17.47 -0.09 1.60 16 10 N -0.86 -23.17 13.96 55.50 0.77 -22.39 16 11 Si 0.86 19.32 24.77 -169.99 -4.21 15.11 16 12 H -0.27 -5.82 6.77 56.52 0.38 -5.44 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.26 -5.66 7.07 56.52 0.40 -5.26 16 15 C 0.52 12.08 7.28 -10.98 -0.08 12.00 16 16 O -0.56 -13.88 12.87 -16.54 -0.21 -14.09 16 17 C -0.13 -2.48 5.08 -91.77 -0.47 -2.95 16 18 H 0.13 2.46 7.35 -51.93 -0.38 2.08 16 19 C -0.14 -2.28 9.87 -26.73 -0.26 -2.54 16 20 C -0.08 -1.26 6.24 -91.77 -0.57 -1.84 16 21 H 0.14 1.77 8.14 -51.93 -0.42 1.35 16 22 C 0.07 1.32 4.80 -35.62 -0.17 1.14 16 23 C -0.22 -3.88 10.81 -39.70 -0.43 -4.31 16 24 C -0.20 -3.37 10.81 -39.70 -0.43 -3.80 16 25 C 0.01 0.23 6.80 -35.62 -0.24 -0.01 16 26 C -0.07 -0.96 5.96 -91.78 -0.55 -1.51 16 27 H 0.13 1.50 8.14 -51.92 -0.42 1.07 16 28 C -0.16 -2.17 9.81 -26.73 -0.26 -2.43 16 29 C -0.15 -1.72 6.11 -90.62 -0.55 -2.27 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 C -0.12 -1.06 10.19 37.16 0.38 -0.68 16 32 O -0.15 -2.94 8.54 -16.40 -0.14 -3.08 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 2.33 7.51 -51.93 -0.39 1.94 16 37 H 0.10 2.24 3.14 -51.93 -0.16 2.08 16 38 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.10 1.75 7.97 -51.93 -0.41 1.34 16 40 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 42 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.10 1.11 8.05 -51.93 -0.42 0.70 16 44 H 0.10 1.57 7.96 -51.93 -0.41 1.16 16 45 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -32.29 395.67 -8.05 -40.33 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.77 Total: 11.04 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.54 Total: -1.73 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.58 Total: -33.38 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.07 Total: -37.34 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.21 Total: 15.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.29 -8.05 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.238 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds