Wall clock time and date at job start Wed Apr 1 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00315 * 2 1 4 4 O 1.20830 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00208 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46826 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99881 * 269.99507 * 6 5 3 8 8 H 1.07996 * 119.99621 * 140.56150 * 7 6 5 9 9 C 1.38950 * 120.00445 * 320.56419 * 7 6 5 10 10 N 1.31405 * 120.00221 * 162.76145 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 342.76248 * 9 7 6 12 12 H 1.48504 * 109.47339 * 95.85952 * 11 9 7 13 13 H 1.48496 * 109.47353 * 215.86198 * 11 9 7 14 14 H 1.48506 * 109.47073 * 335.86336 * 11 9 7 15 15 C 1.34774 * 120.00144 * 90.00259 * 6 5 3 16 16 O 1.21287 * 119.99978 * 354.50364 * 15 6 5 17 17 C 1.50705 * 119.99801 * 174.50116 * 15 6 5 18 18 H 1.08993 * 115.55066 * 49.12472 * 17 15 6 19 19 C 1.52998 * 117.49496 * 263.41461 * 17 15 6 20 20 C 1.53003 * 60.00140 * 252.51390 * 19 17 15 21 21 H 1.09004 * 117.51957 * 252.51953 * 20 19 17 22 22 C 1.50701 * 117.49900 * 107.48997 * 20 19 17 23 23 C 1.34513 * 125.79168 * 171.37617 * 22 20 19 24 24 C 1.41379 * 106.84106 * 180.02562 * 23 22 20 25 25 C 1.34512 * 106.84413 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.79397 * 179.97438 * 25 24 23 27 27 H 1.09008 * 115.54463 * 25.72669 * 26 25 24 28 28 C 1.52996 * 117.49675 * 171.38933 * 26 25 24 29 29 C 1.52991 * 117.50188 * 240.01390 * 26 25 24 30 30 H 1.09004 * 117.50033 * 0.02562 * 29 26 25 31 31 C 1.53004 * 117.49791 * 145.02026 * 29 26 25 32 32 O 1.34306 * 125.78733 * 351.07621 * 22 20 19 33 33 H 1.08998 * 109.47246 * 300.00179 * 1 2 3 34 34 H 1.09005 * 109.47018 * 60.00668 * 1 2 3 35 35 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 36 36 H 1.08990 * 109.46891 * 299.99680 * 5 3 2 37 37 H 1.09004 * 109.46978 * 59.99998 * 5 3 2 38 38 H 0.97006 * 120.00082 * 180.02562 * 10 9 7 39 39 H 1.09003 * 117.50474 * 0.02562 * 19 17 15 40 40 H 1.09007 * 117.49706 * 145.02976 * 19 17 15 41 41 H 1.08003 * 126.57503 * 0.04548 * 23 22 20 42 42 H 1.08004 * 126.57887 * 179.97438 * 24 23 22 43 43 H 1.09004 * 117.49760 * 214.97980 * 28 26 25 44 44 H 1.08993 * 117.50735 * 0.02562 * 28 26 25 45 45 H 1.08999 * 109.46990 * 59.99977 * 31 29 26 46 46 H 1.08998 * 109.47211 * 180.02562 * 31 29 26 47 47 H 1.09001 * 109.47025 * 300.00083 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1766 3.3362 -1.1879 8 1 3.8608 4.3634 -1.2951 9 6 4.7804 2.6802 -2.2535 10 7 4.6694 3.1631 -3.4705 11 14 5.7501 1.1115 -1.9561 12 1 4.8793 -0.0644 -2.2097 13 1 6.9175 1.0698 -2.8728 14 1 6.2243 1.0819 -0.5491 15 6 4.1723 3.3267 1.1667 16 8 3.9047 2.7783 2.2149 17 6 4.7180 4.7314 1.1689 18 1 4.2254 5.4282 0.4908 19 6 6.2219 4.9047 1.3908 20 6 5.2364 5.2857 2.4974 21 1 5.0849 6.3473 2.6933 22 6 5.1622 4.3852 3.7035 23 6 4.4843 4.6421 4.8366 24 6 4.6879 3.5374 5.6951 25 6 5.4785 2.6717 5.0356 26 6 5.9634 1.3450 5.5606 27 1 5.3330 0.8808 6.3192 28 6 6.6874 0.4195 4.5808 29 6 7.4752 1.1408 5.6762 30 1 8.1193 1.9662 5.3728 31 6 7.9871 0.3007 6.8481 32 8 5.7571 3.1874 3.8271 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 -0.3634 -1.0276 0.0005 36 1 3.9556 0.7809 0.8908 37 1 3.9564 0.7804 -0.8892 38 1 5.0906 2.7049 -4.2145 39 1 6.8167 4.0026 1.5347 40 1 6.7190 5.7157 0.8585 41 1 3.8969 5.5230 5.0494 42 1 4.2864 3.4128 6.6900 43 1 6.5338 -0.6536 4.6950 44 1 6.8134 0.7702 3.5566 45 1 7.5647 -0.7023 6.7879 46 1 9.0745 0.2407 6.8044 47 1 7.6866 0.7657 7.7870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:35 Heat of formation + Delta-G solvation = -46.957282 kcal Electronic energy + Delta-G solvation = -31831.642480 eV Core-core repulsion = 27562.633634 eV Total energy + Delta-G solvation = -4269.008846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39114 -41.76716 -40.64266 -38.69597 -37.94075 -37.24415 -36.60033 -34.02461 -33.75494 -31.11576 -30.61487 -28.89906 -28.12985 -27.04343 -25.05200 -24.47800 -22.70848 -22.47616 -22.31064 -21.56431 -20.91501 -20.55622 -19.21464 -18.99354 -18.57843 -17.63921 -17.41030 -17.24870 -17.06133 -16.74187 -16.25864 -16.08803 -15.48631 -15.21673 -15.14422 -14.79343 -14.56980 -14.42036 -14.24444 -14.05969 -13.89539 -13.60854 -13.54994 -13.27945 -13.03473 -13.02872 -12.91913 -12.88963 -12.70219 -12.45079 -12.39174 -11.96557 -11.89420 -11.87101 -11.71977 -11.43707 -11.35269 -11.15418 -10.99749 -10.63113 -10.46467 -9.90544 -8.78467 -8.53073 -6.22141 0.86379 1.06709 1.14966 1.27567 1.37461 1.43390 1.73641 1.88609 2.11514 2.12499 2.45611 2.87868 2.92102 3.03984 3.49426 3.64313 3.74254 3.83546 3.85335 3.90875 3.92251 3.96356 4.06349 4.18859 4.24773 4.26052 4.32566 4.37367 4.43542 4.50814 4.59099 4.72069 4.80224 4.84964 4.88439 4.95707 5.00431 5.07763 5.13685 5.16543 5.19394 5.20759 5.27664 5.38216 5.41288 5.80800 6.01009 6.13266 6.47123 6.67145 6.89163 7.26686 7.64219 8.61040 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.004128 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.372578 B = 6781.281390 C = 7171.580194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.451 3.549 4 O -0.522 6.522 5 C 0.106 3.894 6 N -0.458 5.458 7 C -0.332 4.332 8 H 0.080 0.920 9 C 0.030 3.970 10 N -0.896 5.896 11 Si 0.913 3.087 12 H -0.253 1.253 13 H -0.274 1.274 14 H -0.256 1.256 15 C 0.513 3.487 16 O -0.582 6.582 17 C -0.160 4.160 18 H 0.132 0.868 19 C -0.124 4.124 20 C -0.058 4.058 21 H 0.173 0.827 22 C 0.039 3.961 23 C -0.229 4.229 24 C -0.215 4.215 25 C -0.002 4.002 26 C -0.085 4.085 27 H 0.148 0.852 28 C -0.173 4.173 29 C -0.126 4.126 30 H 0.092 0.908 31 C -0.116 4.116 32 O -0.176 6.176 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.281 0.719 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -4.901 14.806 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.410 6.410 5 C -0.019 4.019 6 N -0.180 5.180 7 C -0.459 4.459 8 H 0.097 0.903 9 C -0.175 4.175 10 N -0.532 5.532 11 Si 0.737 3.263 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.180 1.180 15 C 0.304 3.696 16 O -0.465 6.465 17 C -0.181 4.181 18 H 0.149 0.851 19 C -0.161 4.161 20 C -0.076 4.076 21 H 0.190 0.810 22 C -0.012 4.012 23 C -0.248 4.248 24 C -0.234 4.234 25 C -0.052 4.052 26 C -0.102 4.102 27 H 0.166 0.834 28 C -0.210 4.210 29 C -0.145 4.145 30 H 0.111 0.889 31 C -0.173 4.173 32 O -0.072 6.072 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.787 -5.040 14.890 16.169 hybrid contribution -0.523 -0.239 -0.813 0.996 sum 3.264 -5.279 14.076 15.384 Atomic orbital electron populations 1.23561 0.74849 1.05926 1.02163 1.86488 1.25221 1.32478 1.84121 1.24685 0.92907 0.81627 0.71523 1.90593 1.67248 1.37542 1.45628 1.21424 0.87389 0.88133 1.04991 1.43376 1.59468 1.08838 1.06308 1.18845 1.39805 0.99118 0.88176 0.90271 1.25892 0.96261 1.00993 0.94324 1.69781 1.41787 1.42262 0.99404 0.86316 0.79901 0.80348 0.79731 1.17946 1.20023 1.18000 1.20094 0.78851 0.88282 0.82367 1.90583 1.54993 1.69180 1.31781 1.22070 1.00369 0.94967 1.00675 0.85063 1.23012 0.89814 1.03897 0.99410 1.20911 1.04802 0.98146 0.83729 0.80982 1.21340 0.98529 0.84715 0.96597 1.21558 1.06030 1.02544 0.94666 1.21583 1.04224 0.95305 1.02296 1.21738 1.02465 0.97159 0.83805 1.20706 0.96382 0.90166 1.02976 0.83443 1.23136 1.03860 0.99016 0.95005 1.22537 0.91330 1.01459 0.99143 0.88935 1.21388 1.01692 0.98813 0.95391 1.83848 1.59991 1.29790 1.33597 0.92407 0.92428 0.83990 0.86237 0.87855 0.90851 0.90008 0.84217 0.82480 0.82115 0.86127 0.91238 0.91319 0.90888 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 16 2 O -0.37 -13.70 10.56 -51.35 -0.54 -14.24 16 3 C 0.45 20.50 8.02 71.24 0.57 21.08 16 4 O -0.52 -26.93 16.18 21.95 0.36 -26.57 16 5 C 0.11 4.80 4.69 85.63 0.40 5.20 16 6 N -0.46 -22.62 1.65 -639.61 -1.06 -23.68 16 7 C -0.33 -17.59 9.04 84.04 0.76 -16.83 16 8 H 0.08 4.53 7.19 -2.91 -0.02 4.51 16 9 C 0.03 1.55 5.38 84.93 0.46 2.01 16 10 N -0.90 -49.27 13.96 21.66 0.30 -48.97 16 11 Si 0.91 39.66 24.77 68.60 1.70 41.36 16 12 H -0.25 -10.28 6.77 99.48 0.67 -9.60 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 14 H -0.26 -11.03 7.07 99.48 0.70 -10.33 16 15 C 0.51 24.42 7.28 87.66 0.64 25.06 16 16 O -0.58 -29.22 12.87 18.07 0.23 -28.98 16 17 C -0.16 -6.30 5.08 -11.54 -0.06 -6.36 16 18 H 0.13 5.08 7.35 -2.39 -0.02 5.06 16 19 C -0.12 -4.05 9.87 30.59 0.30 -3.75 16 20 C -0.06 -1.87 6.24 -11.54 -0.07 -1.94 16 21 H 0.17 4.12 8.14 -2.39 -0.02 4.10 16 22 C 0.04 1.42 4.80 24.83 0.12 1.54 16 23 C -0.23 -7.70 10.81 22.19 0.24 -7.46 16 24 C -0.22 -6.91 10.81 22.19 0.24 -6.67 16 25 C 0.00 -0.06 6.80 24.83 0.17 0.11 16 26 C -0.08 -2.23 5.96 -11.54 -0.07 -2.30 16 27 H 0.15 3.18 8.14 -2.38 -0.02 3.16 16 28 C -0.17 -4.50 9.81 30.59 0.30 -4.20 16 29 C -0.13 -2.79 6.11 -10.80 -0.07 -2.86 16 30 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 31 C -0.12 -1.71 10.19 71.98 0.73 -0.98 16 32 O -0.18 -6.91 8.54 18.54 0.16 -6.76 16 33 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 34 H 0.06 1.65 8.13 -2.38 -0.02 1.64 16 35 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.12 5.12 7.51 -2.39 -0.02 5.10 16 37 H 0.10 4.58 3.14 -2.38 -0.01 4.57 16 38 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 39 H 0.08 2.95 7.97 -2.39 -0.02 2.93 16 40 H 0.14 3.59 8.14 -2.38 -0.02 3.57 16 41 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 43 H 0.12 2.52 8.05 -2.38 -0.02 2.51 16 44 H 0.07 2.24 7.96 -2.39 -0.02 2.22 16 45 H 0.07 0.89 7.90 -2.39 -0.02 0.87 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.33 395.67 7.96 -64.37 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: 0.95 Total: 39.84 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.86 Total: 3.63 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -0.76 Total: -72.65 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: 0.20 Total: -76.55 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.70 Total: 41.36 kcal Total: -72.33 7.96 -64.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.408 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds