Wall clock time and date at job start Wed Apr 1 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47377 * 2 1 4 4 O 1.45207 * 109.46929 * 119.99821 * 2 1 3 5 5 C 1.34233 * 117.00009 * 90.00009 * 4 2 1 6 6 O 1.20826 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99945 * 180.02562 * 5 4 2 8 8 C 1.53008 * 109.46858 * 180.02562 * 7 5 4 9 9 N 1.46498 * 109.46632 * 179.97438 * 8 7 5 10 10 C 1.34785 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21715 * 120.00261 * 359.97438 * 10 9 8 12 12 C 1.46255 * 119.99650 * 180.27579 * 10 9 8 13 13 C 1.35025 * 119.99918 * 172.93880 * 12 10 9 14 14 C 1.46960 * 119.99925 * 348.68186 * 13 12 10 15 15 C 1.40028 * 120.10009 * 316.40557 * 14 13 12 16 16 C 1.37594 * 119.89934 * 179.76739 * 15 14 13 17 17 C 1.39184 * 120.09927 * 0.50673 * 16 15 14 18 18 O 1.35570 * 119.89843 * 179.76454 * 17 16 15 19 19 C 1.34783 * 116.99886 * 174.33946 * 18 17 16 20 20 H 1.07998 * 119.99829 * 5.06153 * 19 18 17 21 21 C 1.38721 * 119.99912 * 185.05607 * 19 18 17 22 22 N 1.31504 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99732 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47098 * 90.00722 * 23 21 19 25 25 H 1.48507 * 109.46797 * 210.00341 * 23 21 19 26 26 H 1.48504 * 109.47379 * 330.00326 * 23 21 19 27 27 C 1.39177 * 120.19984 * 359.74795 * 17 16 15 28 28 C 1.37596 * 120.10326 * 359.97438 * 27 17 16 29 29 H 1.09006 * 109.47051 * 60.00274 * 1 2 3 30 30 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47227 * 300.00455 * 1 2 3 32 32 H 1.09001 * 109.47227 * 239.99545 * 2 1 3 33 33 H 1.09004 * 109.47779 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47244 * 299.99976 * 3 2 1 35 35 H 1.09001 * 109.47313 * 59.99598 * 3 2 1 36 36 H 1.08992 * 109.47124 * 60.00103 * 7 5 4 37 37 H 1.09003 * 109.46834 * 299.99551 * 7 5 4 38 38 H 1.08992 * 109.47442 * 59.99963 * 8 7 5 39 39 H 1.09003 * 109.46758 * 299.99263 * 8 7 5 40 40 H 0.96995 * 120.00513 * 359.97438 * 9 8 7 41 41 H 1.08005 * 120.00497 * 352.93596 * 12 10 9 42 42 H 1.08000 * 120.00300 * 168.68630 * 13 12 10 43 43 H 1.08007 * 120.05004 * 0.02562 * 15 14 13 44 44 H 1.07995 * 119.95777 * 180.23340 * 16 15 14 45 45 H 0.96998 * 119.99874 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.94407 * 179.97438 * 27 17 16 47 47 H 1.08004 * 120.04756 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2171 -2.0076 1.0853 6 8 1.9982 -2.5748 0.0411 7 6 2.7181 -2.7853 2.2748 8 6 2.8634 -4.2604 1.8951 9 7 3.3510 -5.0164 3.0514 10 6 3.5551 -6.3448 2.9505 11 8 3.3338 -6.9165 1.8990 12 6 4.0362 -7.1006 4.1065 13 6 4.1050 -8.4479 4.0512 14 6 3.4716 -9.1710 2.9396 15 6 2.1903 -8.8090 2.5058 16 6 1.6031 -9.4857 1.4615 17 6 2.2764 -10.5354 0.8434 18 8 1.6920 -11.2024 -0.1820 19 6 2.4394 -12.1289 -0.8142 20 1 3.4259 -12.3695 -0.4466 21 6 1.9413 -12.7735 -1.9371 22 7 0.7402 -12.4802 -2.3850 23 14 2.9769 -14.0580 -2.8128 24 1 2.7035 -15.3960 -2.2294 25 1 2.6344 -14.0687 -4.2578 26 1 4.4159 -13.7306 -2.6476 27 6 3.5478 -10.9021 1.2746 28 6 4.1452 -10.2274 2.3145 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.0086 -2.6895 3.0965 37 1 3.6870 -2.3928 2.5835 38 1 3.5731 -4.3559 1.0735 39 1 1.8946 -4.6531 1.5861 40 1 3.5271 -4.5609 3.8894 41 1 4.3365 -6.5810 5.0045 42 1 4.6255 -8.9943 4.8238 43 1 1.6655 -7.9972 2.9875 44 1 0.6165 -9.2048 1.1238 45 1 0.3921 -12.9307 -3.1703 46 1 4.0663 -11.7175 0.7923 47 1 5.1320 -10.5125 2.6481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490820289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:43 Heat of formation + Delta-G solvation = -103.528128 kcal Electronic energy + Delta-G solvation = -28947.516064 eV Core-core repulsion = 24676.054122 eV Total energy + Delta-G solvation = -4271.461942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92543 -39.72064 -38.68734 -37.37454 -36.53550 -35.08916 -33.59056 -33.02965 -32.12870 -31.23222 -30.08576 -28.03470 -27.73480 -25.63496 -25.10157 -22.94432 -21.96000 -21.72620 -20.96271 -20.80571 -19.27844 -18.14381 -17.90168 -17.22578 -16.86973 -16.69407 -16.34392 -15.57915 -15.38219 -14.74290 -14.63230 -14.46375 -14.22923 -14.14033 -13.92463 -13.63633 -13.45847 -13.31665 -13.08112 -12.94127 -12.74959 -12.59857 -12.49925 -12.22250 -12.16907 -12.14917 -11.78394 -11.66711 -11.34068 -11.33636 -10.99327 -10.96663 -10.73812 -10.65933 -10.58873 -10.38507 -9.49745 -9.40190 -9.13440 -9.00793 -8.66898 -7.89181 -6.83417 -6.42643 -3.98263 1.25880 1.89287 2.18087 2.45918 2.72993 3.15706 3.17485 3.21762 3.38081 3.64905 3.99921 4.21890 4.34815 4.46176 4.50995 4.62975 4.71025 4.72811 4.95676 5.08594 5.09536 5.14999 5.24495 5.26011 5.31651 5.39087 5.40165 5.57883 5.59691 5.61154 5.71851 5.76091 5.83725 5.87815 6.15896 6.28159 6.34973 6.42150 6.48370 6.62782 6.82032 7.06846 7.15594 7.39434 7.43538 7.47704 7.53865 7.63745 7.95619 8.04083 8.53970 9.02920 9.75165 10.75233 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002046 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.454044 B =13684.299529 C =15719.055405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.356 6.356 5 C 0.464 3.536 6 O -0.496 6.496 7 C -0.125 4.125 8 C 0.132 3.868 9 N -0.739 5.739 10 C 0.539 3.461 11 O -0.506 6.506 12 C -0.268 4.268 13 C 0.029 3.971 14 C -0.192 4.192 15 C 0.012 3.988 16 C -0.202 4.202 17 C 0.172 3.828 18 O -0.173 6.173 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.038 3.962 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.251 4.251 28 C -0.041 4.041 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 24.364 13.072 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.273 6.273 5 C 0.306 3.694 6 O -0.383 6.383 7 C -0.163 4.163 8 C 0.008 3.992 9 N -0.394 5.394 10 C 0.329 3.671 11 O -0.381 6.381 12 C -0.289 4.289 13 C 0.010 3.990 14 C -0.193 4.193 15 C -0.007 4.007 16 C -0.221 4.221 17 C 0.117 3.883 18 O -0.075 6.075 19 C -0.466 4.466 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.270 4.270 28 C -0.059 4.059 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.229 0.771 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.215 23.729 11.609 26.751 hybrid contribution 0.642 -0.193 -0.128 0.683 sum 4.858 23.536 11.481 26.634 Atomic orbital electron populations 1.22219 0.94137 1.03337 1.03137 1.22772 0.94758 0.93039 0.86994 1.21892 1.02109 0.93405 1.03229 1.86544 1.77155 1.22190 1.41433 1.23402 0.74689 0.81364 0.89980 1.90750 1.47047 1.69821 1.30632 1.21505 1.04430 0.94674 0.95645 1.20971 1.01788 0.87346 0.89144 1.45901 1.70174 1.08855 1.14425 1.18499 0.77819 0.81181 0.89640 1.91025 1.49058 1.67892 1.30139 1.22556 1.12863 0.94957 0.98538 1.22341 0.89094 0.93188 0.94388 1.18295 0.96798 1.01659 1.02513 1.20441 0.93149 0.93746 0.93334 1.20013 1.01822 0.99288 1.01025 1.19532 0.90840 0.90011 0.87950 1.83907 1.39156 1.45852 1.38565 1.21396 1.00027 1.15664 1.09470 0.88880 1.25333 0.96657 0.98602 0.96039 1.70024 1.15709 1.40452 1.23208 0.85694 0.79387 0.79710 0.78537 1.19852 1.20240 1.19134 1.20950 0.97562 1.05679 1.02824 1.20736 0.97449 0.93083 0.94666 0.90573 0.91758 0.91518 0.89527 0.91661 0.90274 0.91371 0.87007 0.87074 0.90553 0.90405 0.77091 0.86084 0.86034 0.88091 0.86829 0.91967 0.85651 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.55 37.16 0.35 -0.85 16 2 C 0.08 0.62 3.18 -26.74 -0.09 0.53 16 3 C -0.15 -0.78 9.57 37.15 0.36 -0.43 16 4 O -0.36 -3.18 9.88 -39.27 -0.39 -3.57 16 5 C 0.46 4.68 7.93 36.00 0.29 4.97 16 6 O -0.50 -6.91 15.20 -18.75 -0.29 -7.20 16 7 C -0.12 -0.87 5.93 -27.88 -0.17 -1.04 16 8 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 9 N -0.74 -7.62 5.55 -61.75 -0.34 -7.96 16 10 C 0.54 7.87 6.77 -13.04 -0.09 7.78 16 11 O -0.51 -10.09 12.17 5.18 0.06 -10.03 16 12 C -0.27 -3.28 9.90 -37.50 -0.37 -3.65 16 13 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 14 C -0.19 -3.59 4.54 -105.03 -0.48 -4.06 16 15 C 0.01 0.24 6.59 -39.15 -0.26 -0.02 16 16 C -0.20 -4.77 9.97 -39.47 -0.39 -5.16 16 17 C 0.17 4.46 6.66 -38.88 -0.26 4.20 16 18 O -0.17 -5.17 9.74 0.74 0.01 -5.16 16 19 C -0.39 -11.29 9.48 30.91 0.29 -11.00 16 20 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 23 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 C -0.25 -5.83 9.14 -39.47 -0.36 -6.20 16 28 C -0.04 -0.81 9.78 -39.15 -0.38 -1.19 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.79 7.16 -51.93 -0.37 0.42 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.40 2.50 8.45 -40.82 -0.34 2.15 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.10 1.87 7.02 -52.48 -0.37 1.50 16 44 H 0.11 2.62 8.06 -52.49 -0.42 2.20 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.13 2.88 5.62 -52.49 -0.29 2.58 16 47 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -37.01 401.67 -7.89 -44.90 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.70 Total: 5.67 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.03 Total: -13.64 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.42 Total: -33.10 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.60 Total: -25.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.01 -7.89 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490820289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.625 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds