Wall clock time and date at job start Wed Apr 1 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47377 * 2 1 4 4 O 1.45207 * 109.46929 * 119.99821 * 2 1 3 5 5 C 1.34233 * 117.00009 * 90.00009 * 4 2 1 6 6 O 1.20826 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99945 * 180.02562 * 5 4 2 8 8 C 1.53008 * 109.46858 * 180.02562 * 7 5 4 9 9 N 1.46498 * 109.46632 * 179.97438 * 8 7 5 10 10 C 1.34785 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21715 * 120.00261 * 359.97438 * 10 9 8 12 12 C 1.46255 * 119.99650 * 180.27579 * 10 9 8 13 13 C 1.35025 * 119.99918 * 172.93880 * 12 10 9 14 14 C 1.46960 * 119.99925 * 348.68186 * 13 12 10 15 15 C 1.40028 * 120.10009 * 316.40557 * 14 13 12 16 16 C 1.37594 * 119.89934 * 179.76739 * 15 14 13 17 17 C 1.39184 * 120.09927 * 0.50673 * 16 15 14 18 18 O 1.35570 * 119.89843 * 179.76454 * 17 16 15 19 19 C 1.34783 * 116.99886 * 174.33946 * 18 17 16 20 20 H 1.07998 * 119.99829 * 5.06153 * 19 18 17 21 21 C 1.38721 * 119.99912 * 185.05607 * 19 18 17 22 22 N 1.31504 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99732 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47098 * 90.00722 * 23 21 19 25 25 H 1.48507 * 109.46797 * 210.00341 * 23 21 19 26 26 H 1.48504 * 109.47379 * 330.00326 * 23 21 19 27 27 C 1.39177 * 120.19984 * 359.74795 * 17 16 15 28 28 C 1.37596 * 120.10326 * 359.97438 * 27 17 16 29 29 H 1.09006 * 109.47051 * 60.00274 * 1 2 3 30 30 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47227 * 300.00455 * 1 2 3 32 32 H 1.09001 * 109.47227 * 239.99545 * 2 1 3 33 33 H 1.09004 * 109.47779 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47244 * 299.99976 * 3 2 1 35 35 H 1.09001 * 109.47313 * 59.99598 * 3 2 1 36 36 H 1.08992 * 109.47124 * 60.00103 * 7 5 4 37 37 H 1.09003 * 109.46834 * 299.99551 * 7 5 4 38 38 H 1.08992 * 109.47442 * 59.99963 * 8 7 5 39 39 H 1.09003 * 109.46758 * 299.99263 * 8 7 5 40 40 H 0.96995 * 120.00513 * 359.97438 * 9 8 7 41 41 H 1.08005 * 120.00497 * 352.93596 * 12 10 9 42 42 H 1.08000 * 120.00300 * 168.68630 * 13 12 10 43 43 H 1.08007 * 120.05004 * 0.02562 * 15 14 13 44 44 H 1.07995 * 119.95777 * 180.23340 * 16 15 14 45 45 H 0.96998 * 119.99874 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.94407 * 179.97438 * 27 17 16 47 47 H 1.08004 * 120.04756 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2171 -2.0076 1.0853 6 8 1.9982 -2.5748 0.0411 7 6 2.7181 -2.7853 2.2748 8 6 2.8634 -4.2604 1.8951 9 7 3.3510 -5.0164 3.0514 10 6 3.5551 -6.3448 2.9505 11 8 3.3338 -6.9165 1.8990 12 6 4.0362 -7.1006 4.1065 13 6 4.1050 -8.4479 4.0512 14 6 3.4716 -9.1710 2.9396 15 6 2.1903 -8.8090 2.5058 16 6 1.6031 -9.4857 1.4615 17 6 2.2764 -10.5354 0.8434 18 8 1.6920 -11.2024 -0.1820 19 6 2.4394 -12.1289 -0.8142 20 1 3.4259 -12.3695 -0.4466 21 6 1.9413 -12.7735 -1.9371 22 7 0.7402 -12.4802 -2.3850 23 14 2.9769 -14.0580 -2.8128 24 1 2.7035 -15.3960 -2.2294 25 1 2.6344 -14.0687 -4.2578 26 1 4.4159 -13.7306 -2.6476 27 6 3.5478 -10.9021 1.2746 28 6 4.1452 -10.2274 2.3145 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.0086 -2.6895 3.0965 37 1 3.6870 -2.3928 2.5835 38 1 3.5731 -4.3559 1.0735 39 1 1.8946 -4.6531 1.5861 40 1 3.5271 -4.5609 3.8894 41 1 4.3365 -6.5810 5.0045 42 1 4.6255 -8.9943 4.8238 43 1 1.6655 -7.9972 2.9875 44 1 0.6165 -9.2048 1.1238 45 1 0.3921 -12.9307 -3.1703 46 1 4.0663 -11.7175 0.7923 47 1 5.1320 -10.5125 2.6481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490820289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:42 Heat of formation + Delta-G solvation = -129.370492 kcal Electronic energy + Delta-G solvation = -28948.636673 eV Core-core repulsion = 24676.054122 eV Total energy + Delta-G solvation = -4272.582551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73747 -41.08242 -40.37404 -38.36374 -38.03208 -36.21891 -34.59375 -34.22873 -33.92681 -32.15802 -31.82408 -29.57332 -28.23786 -27.47713 -26.29216 -24.16732 -23.48570 -22.78894 -22.31795 -21.58934 -20.54150 -19.76805 -18.97844 -18.86087 -18.10229 -17.64077 -17.25051 -16.65971 -16.43848 -16.32924 -16.21981 -15.71221 -15.57273 -15.43091 -15.15985 -14.80842 -14.69195 -14.54933 -14.37674 -14.17540 -14.01021 -13.71703 -13.56387 -13.21690 -13.19789 -13.02834 -13.01219 -12.77282 -12.67105 -12.55690 -12.35340 -12.22505 -12.12899 -11.94797 -11.74160 -11.51258 -11.24639 -10.97410 -10.69678 -10.39029 -10.07716 -9.58174 -8.55574 -8.49165 -6.16777 0.00663 0.71109 1.10299 1.12928 1.32069 1.44605 1.46647 1.51232 2.16331 2.45988 2.49685 2.86376 3.20103 3.45733 3.52340 3.77644 3.83287 3.90319 3.98744 4.02416 4.08808 4.11359 4.15971 4.19148 4.39041 4.54351 4.62598 4.63799 4.71927 4.73699 4.77580 4.81825 4.85540 4.88604 5.05848 5.09534 5.10167 5.19119 5.26097 5.28260 5.44294 5.46832 5.49215 5.68094 5.72360 5.85502 6.01638 6.25419 6.65590 6.72956 6.94301 7.46681 7.76977 8.74050 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002046 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.454044 B =13684.299529 C =15719.055405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.350 6.350 5 C 0.462 3.538 6 O -0.546 6.546 7 C -0.108 4.108 8 C 0.134 3.866 9 N -0.711 5.711 10 C 0.523 3.477 11 O -0.570 6.570 12 C -0.225 4.225 13 C 0.004 3.996 14 C -0.161 4.161 15 C 0.013 3.987 16 C -0.224 4.224 17 C 0.125 3.875 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.027 4.027 22 N -0.922 5.922 23 Si 1.024 2.976 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.259 4.259 28 C -0.048 4.048 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.422 0.578 41 H 0.182 0.818 42 H 0.172 0.828 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 27.142 17.555 33.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 C -0.200 4.200 4 O -0.267 6.267 5 C 0.306 3.694 6 O -0.436 6.436 7 C -0.145 4.145 8 C 0.009 3.991 9 N -0.365 5.365 10 C 0.314 3.686 11 O -0.451 6.451 12 C -0.246 4.246 13 C -0.016 4.016 14 C -0.161 4.161 15 C -0.005 4.005 16 C -0.243 4.243 17 C 0.074 3.926 18 O -0.139 6.139 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.224 4.224 22 N -0.560 5.560 23 Si 0.842 3.158 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.279 4.279 28 C -0.066 4.066 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.261 0.739 41 H 0.199 0.801 42 H 0.189 0.811 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.496 26.612 16.216 32.052 hybrid contribution -0.272 -0.551 -1.154 1.307 sum 7.224 26.061 15.062 30.955 Atomic orbital electron populations 1.22216 0.93605 1.02152 1.04591 1.22996 0.95348 0.94271 0.85938 1.21892 1.02134 0.91416 1.04518 1.86544 1.76803 1.21560 1.41801 1.24052 0.73508 0.81675 0.90138 1.90748 1.49368 1.70724 1.32804 1.21488 1.07179 0.91026 0.94844 1.20784 0.99269 0.90158 0.88891 1.45623 1.67960 1.07713 1.15235 1.19242 0.77251 0.82450 0.89691 1.91037 1.51880 1.69412 1.32722 1.23065 1.08460 0.94374 0.98657 1.22601 0.90964 0.93972 0.94014 1.18923 0.95424 0.99874 1.01921 1.20689 0.94206 0.93329 0.92295 1.20196 1.01684 0.99779 1.02679 1.20023 0.92745 0.91420 0.88373 1.83875 1.40878 1.48058 1.41094 1.21898 1.00707 1.16184 1.10328 0.87963 1.26723 0.98114 1.01040 0.96514 1.70183 1.18233 1.43070 1.24508 0.84530 0.77735 0.76520 0.77006 1.18295 1.19534 1.17679 1.21101 0.96648 1.06136 1.03976 1.21205 0.99098 0.92951 0.93306 0.89042 0.94194 0.90175 0.91628 0.91594 0.88718 0.90332 0.83579 0.83376 0.93435 0.93634 0.73923 0.80050 0.81069 0.86221 0.88399 0.91778 0.86214 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.55 71.98 0.69 -1.61 16 2 C 0.07 1.05 3.18 30.59 0.10 1.15 16 3 C -0.14 -1.24 9.57 71.98 0.69 -0.55 16 4 O -0.35 -5.79 9.88 -51.45 -0.51 -6.30 16 5 C 0.46 9.03 7.93 71.23 0.56 9.60 16 6 O -0.55 -16.11 15.20 21.96 0.33 -15.77 16 7 C -0.11 -1.19 5.93 29.85 0.18 -1.02 16 8 C 0.13 2.81 4.96 86.38 0.43 3.24 16 9 N -0.71 -11.90 5.55 -467.49 -2.60 -14.49 16 10 C 0.52 13.47 6.77 86.32 0.58 14.05 16 11 O -0.57 -22.45 12.17 -4.40 -0.05 -22.50 16 12 C -0.23 -4.02 9.90 23.62 0.23 -3.78 16 13 C 0.00 0.08 9.80 23.82 0.23 0.31 16 14 C -0.16 -5.63 4.54 -20.13 -0.09 -5.72 16 15 C 0.01 0.54 6.59 22.55 0.15 0.68 16 16 C -0.22 -11.36 9.97 22.35 0.22 -11.14 16 17 C 0.13 7.04 6.66 22.72 0.15 7.19 16 18 O -0.23 -15.34 9.74 -20.28 -0.20 -15.54 16 19 C -0.42 -25.95 9.48 67.94 0.64 -25.31 16 20 H 0.10 5.86 5.18 -2.91 -0.02 5.85 16 21 C -0.03 -1.61 5.49 84.86 0.47 -1.15 16 22 N -0.92 -59.86 13.67 21.62 0.30 -59.56 16 23 Si 1.02 45.28 29.55 68.60 2.03 47.30 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 27 C -0.26 -12.54 9.14 22.34 0.20 -12.34 16 28 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.27 7.16 -2.39 -0.02 1.26 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.42 2.68 8.45 -92.71 -0.78 1.90 16 41 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.12 4.34 7.02 -2.91 -0.02 4.32 16 44 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 45 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 46 H 0.12 5.78 5.62 -2.91 -0.02 5.76 16 47 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -95.38 401.67 5.18 -90.20 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.21 Total: 24.65 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 5.66 Total: -27.98 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.30 Total: -74.05 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -0.43 Total: -60.12 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -95.38 5.18 -90.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490820289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.170 kcal (2) G-P(sol) polarization free energy of solvation -95.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds