Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47582 * 101.56653 * 3 2 1 5 5 C 1.36937 * 119.99973 * 263.91665 * 4 3 2 6 6 H 1.07993 * 119.99768 * 199.38430 * 5 4 3 7 7 C 1.38813 * 119.99961 * 19.38791 * 5 4 3 8 8 N 1.31618 * 120.00047 * 22.28252 * 7 5 4 9 9 Si 1.86801 * 119.99725 * 202.28548 * 7 5 4 10 10 H 1.48506 * 109.47032 * 89.99899 * 9 7 5 11 11 H 1.48505 * 109.47079 * 209.99539 * 9 7 5 12 12 H 1.48502 * 109.47258 * 329.99835 * 9 7 5 13 13 C 1.46505 * 120.00095 * 83.91147 * 4 3 2 14 14 C 1.50692 * 109.46965 * 90.00447 * 13 4 3 15 15 O 1.21281 * 119.99956 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00027 * 180.02562 * 14 13 4 17 17 C 1.47080 * 120.88195 * 179.97438 * 16 14 13 18 18 C 1.53245 * 108.52128 * 231.20765 * 17 16 14 19 19 N 1.46900 * 109.33836 * 306.16902 * 18 17 16 20 20 C 1.46896 * 111.00221 * 187.25551 * 19 18 17 21 21 C 1.50697 * 109.47160 * 169.99948 * 20 19 18 22 22 C 1.38426 * 122.53810 * 269.94688 * 21 20 19 23 23 C 1.33396 * 114.91899 * 180.02562 * 22 21 20 24 24 S 1.75882 * 109.59251 * 0.02562 * 23 22 21 25 25 C 1.33383 * 122.54123 * 89.97754 * 21 20 19 26 26 C 1.46898 * 111.26975 * 63.10049 * 19 18 17 27 27 C 1.47082 * 120.88137 * 0.02562 * 16 14 13 28 28 H 4.40643 * 5.51493 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47162 * 341.56312 * 3 2 1 30 30 H 1.09005 * 109.46724 * 221.56750 * 3 2 1 31 31 H 0.96996 * 119.99661 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46931 * 330.00644 * 13 4 3 33 33 H 1.08995 * 109.47221 * 210.00499 * 13 4 3 34 34 H 1.09002 * 109.63054 * 111.49292 * 17 16 14 35 35 H 1.09000 * 109.62998 * 350.91662 * 17 16 14 36 36 H 1.09000 * 109.49048 * 186.21180 * 18 17 16 37 37 H 1.08995 * 109.49269 * 66.12816 * 18 17 16 38 38 H 1.09011 * 109.47060 * 49.99809 * 20 19 18 39 39 H 1.08997 * 109.46876 * 290.00240 * 20 19 18 40 40 H 1.07995 * 122.54471 * 0.05285 * 22 21 20 41 41 H 1.08000 * 125.20215 * 180.27102 * 23 22 21 42 42 H 1.08003 * 125.20043 * 359.97438 * 25 21 20 43 43 H 1.09002 * 109.48697 * 56.85679 * 26 19 18 44 44 H 1.08996 * 109.49384 * 176.93542 * 26 19 18 45 45 H 1.09003 * 109.62302 * 248.50110 * 27 16 14 46 46 H 1.08999 * 109.62438 * 8.88666 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2778 -1.3531 5 6 3.4816 -0.7563 -2.1808 6 1 4.1199 -0.5749 -3.0328 7 6 3.0130 -2.0376 -1.9248 8 7 1.9285 -2.2090 -1.1990 9 14 3.9217 -3.5187 -2.6105 10 1 4.9467 -3.9664 -1.6336 11 1 2.9573 -4.6210 -2.8563 12 1 4.5835 -3.1462 -3.8866 13 6 3.2511 1.6613 -1.8207 14 6 4.6230 2.1894 -1.4894 15 8 5.4242 1.4801 -0.9185 16 7 4.9594 3.4502 -1.8266 17 6 6.2927 3.9856 -1.5123 18 6 6.1211 5.3266 -0.7908 19 7 5.2723 6.2100 -1.6014 20 6 5.2231 7.5624 -1.0301 21 6 4.5544 8.4959 -2.0060 22 6 5.2602 9.1984 -2.9675 23 6 4.5165 9.9813 -3.7507 24 16 2.8269 9.8526 -3.2794 25 6 3.2376 8.7084 -2.0084 26 6 3.9212 5.6549 -1.7574 27 6 4.0024 4.3276 -2.5178 28 1 -1.0500 0.0002 0.0000 29 1 3.0098 -0.9741 0.3250 30 1 3.0090 0.7697 0.6819 31 1 1.6014 -3.1044 -1.0198 32 1 2.4968 2.2758 -1.3292 33 1 3.0999 1.6942 -2.8996 34 1 6.8541 4.1351 -2.4346 35 1 6.8245 3.2874 -0.8658 36 1 7.0971 5.7904 -0.6482 37 1 5.6517 5.1605 0.1788 38 1 6.2370 7.9100 -0.8313 39 1 4.6565 7.5432 -0.0992 40 1 6.3318 9.1184 -3.0757 41 1 4.8937 10.5967 -4.5541 42 1 2.5315 8.2484 -1.3328 43 1 3.4825 5.4842 -0.7743 44 1 3.3018 6.3568 -2.3157 45 1 4.3432 4.5101 -3.5370 46 1 3.0209 3.8539 -2.5392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491544391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = 110.386330 kcal Electronic energy + Delta-G solvation = -27951.007796 eV Core-core repulsion = 24163.867503 eV Total energy + Delta-G solvation = -3787.140293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.00402 -38.81052 -37.26008 -35.62230 -34.22058 -31.72350 -31.54456 -30.93567 -30.24762 -28.50493 -27.07118 -25.90792 -25.09288 -23.69348 -22.83472 -22.05157 -20.76293 -19.04537 -18.63078 -17.80814 -17.47692 -16.81232 -16.36083 -15.78629 -15.51519 -15.40443 -15.19533 -14.92543 -14.67400 -14.31965 -13.68723 -13.51412 -13.38188 -13.28323 -13.13702 -12.98545 -12.72492 -12.52223 -12.36717 -12.12824 -11.85070 -11.51100 -11.33890 -11.27242 -11.25628 -11.20792 -10.90982 -10.84825 -10.69525 -10.20996 -9.98482 -9.29608 -9.10003 -8.94424 -8.74342 -8.70730 -8.62713 -8.40341 -8.19117 -6.98696 -5.76717 -3.18395 0.71984 1.39131 1.71387 2.37908 3.29574 3.35741 3.43964 3.50012 3.51744 3.83451 4.16214 4.38084 4.50092 4.57241 4.67982 4.79310 4.92211 4.97364 5.04356 5.20276 5.21118 5.22651 5.32912 5.35619 5.42507 5.43095 5.57187 5.58236 5.66852 5.74529 5.81629 5.87250 5.95245 6.04272 6.10226 6.12008 6.19561 6.24482 6.72720 6.73744 6.81236 6.88223 7.24263 7.41245 7.77730 7.86965 8.27742 8.90083 9.10454 9.18892 9.76247 10.21163 11.27046 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002330 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.051446 B =12012.396563 C =12640.269329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.096 4.096 3 C 0.271 3.729 4 N -0.561 5.561 5 C -0.260 4.260 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.886 5.886 9 Si 0.902 3.098 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.135 3.865 14 C 0.483 3.517 15 O -0.521 6.521 16 N -0.628 5.628 17 C 0.117 3.883 18 C 0.045 3.955 19 N -0.531 5.531 20 C 0.113 3.887 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.216 4.216 24 S 0.091 5.909 25 C -0.209 4.209 26 C 0.037 3.963 27 C 0.118 3.882 28 H 0.191 0.809 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 26.139 -1.511 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.099 4.099 3 C 0.146 3.854 4 N -0.279 5.279 5 C -0.388 4.388 6 H 0.089 0.911 7 C -0.192 4.192 8 N -0.529 5.529 9 Si 0.731 3.269 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.003 3.997 14 C 0.270 3.730 15 O -0.395 6.395 16 N -0.366 5.366 17 C -0.007 4.007 18 C -0.084 4.084 19 N -0.256 5.256 20 C -0.017 4.017 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.351 4.351 24 S 0.354 5.646 25 C -0.345 4.345 26 C -0.092 4.092 27 C -0.006 4.006 28 H 0.208 0.792 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.113 26.186 -2.151 26.458 hybrid contribution 1.083 -1.438 0.768 1.957 sum 4.196 24.748 -1.384 25.140 Atomic orbital electron populations 1.24166 0.95271 1.07601 1.04667 1.24243 0.95203 0.94326 0.96110 1.17655 0.82649 0.99991 0.85094 1.43580 1.73602 0.99369 1.11329 1.19095 1.24296 0.86762 1.08668 0.91056 1.24880 0.96095 0.98165 1.00110 1.70136 1.19276 1.21106 1.42368 0.86308 0.79288 0.82599 0.78676 1.21349 1.21950 1.20499 1.20686 0.90925 0.88114 0.99945 1.23216 0.92512 0.79649 0.77649 1.90626 1.52271 1.56084 1.40503 1.48540 1.14011 1.13472 1.60596 1.21519 0.85784 0.93259 1.00146 1.22503 0.97539 0.93588 0.94769 1.61912 1.12257 1.01263 1.50169 1.20738 1.00309 0.87361 0.93275 1.18791 0.92696 0.99693 0.99181 1.20044 1.01381 0.97351 0.95779 1.25592 0.96004 1.07228 1.06260 1.84333 1.08092 1.42655 1.29489 1.25540 0.99119 1.05173 1.04661 1.22583 0.90043 0.96613 0.99917 1.21693 0.93846 0.89163 0.95934 0.79189 0.88781 0.94625 0.93509 0.91519 0.90211 0.91573 0.88933 0.89890 0.94348 0.89702 0.93891 0.84197 0.81987 0.82046 0.94342 0.89430 0.91130 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.74 19.25 29.55 0.57 -6.17 16 2 C -0.10 -2.35 11.50 -37.12 -0.43 -2.78 16 3 C 0.27 6.72 5.41 -6.83 -0.04 6.69 16 4 N -0.56 -14.12 1.98 -177.96 -0.35 -14.47 16 5 C -0.26 -7.19 9.63 -15.06 -0.14 -7.34 16 6 H 0.07 1.98 7.92 -52.49 -0.42 1.57 16 7 C 0.01 0.19 4.82 -17.43 -0.08 0.11 16 8 N -0.89 -25.52 9.61 55.49 0.53 -24.99 16 9 Si 0.90 22.29 29.61 -169.99 -5.03 17.26 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.14 2.72 4.52 -5.19 -0.02 2.70 16 14 C 0.48 9.42 7.78 -10.99 -0.09 9.34 16 15 O -0.52 -12.37 15.88 5.56 0.09 -12.28 16 16 N -0.63 -9.41 3.01 -172.49 -0.52 -9.93 16 17 C 0.12 1.53 6.60 -3.60 -0.02 1.50 16 18 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 19 N -0.53 -5.20 4.62 -235.80 -1.09 -6.29 16 20 C 0.11 0.92 5.23 -4.98 -0.03 0.89 16 21 C -0.09 -0.75 4.80 -106.25 -0.51 -1.26 16 22 C -0.12 -0.90 9.98 -41.20 -0.41 -1.31 16 23 C -0.22 -1.56 11.23 29.04 0.33 -1.24 16 24 S 0.09 0.67 23.34 -107.50 -2.51 -1.83 16 25 C -0.21 -1.64 9.20 29.04 0.27 -1.38 16 26 C 0.04 0.38 5.38 -3.73 -0.02 0.36 16 27 C 0.12 1.39 6.50 -3.63 -0.02 1.36 16 28 H 0.19 3.58 7.80 -54.09 -0.42 3.15 16 29 H 0.09 2.57 6.59 -51.93 -0.34 2.23 16 30 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.21 7.59 -51.93 -0.39 0.82 16 33 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.37 7.06 -51.93 -0.37 1.01 16 36 H 0.08 0.70 7.99 -51.93 -0.41 0.28 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.60 7.96 -51.92 -0.41 0.19 16 39 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.16 1.10 8.02 -52.48 -0.42 0.68 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.81 5.78 -51.93 -0.30 0.50 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.03 6.02 -51.93 -0.31 0.72 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -33.17 390.65 -10.39 -43.57 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.73 Total: 1.17 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.67 Total: 1.91 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -1.43 Total: -55.68 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.17 -10.39 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491544391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.953 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds