Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47582 * 101.56653 * 3 2 1 5 5 C 1.36937 * 119.99973 * 263.91665 * 4 3 2 6 6 H 1.07993 * 119.99768 * 199.38430 * 5 4 3 7 7 C 1.38813 * 119.99961 * 19.38791 * 5 4 3 8 8 N 1.31618 * 120.00047 * 22.28252 * 7 5 4 9 9 Si 1.86801 * 119.99725 * 202.28548 * 7 5 4 10 10 H 1.48506 * 109.47032 * 89.99899 * 9 7 5 11 11 H 1.48505 * 109.47079 * 209.99539 * 9 7 5 12 12 H 1.48502 * 109.47258 * 329.99835 * 9 7 5 13 13 C 1.46505 * 120.00095 * 83.91147 * 4 3 2 14 14 C 1.50692 * 109.46965 * 90.00447 * 13 4 3 15 15 O 1.21281 * 119.99956 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00027 * 180.02562 * 14 13 4 17 17 C 1.47080 * 120.88195 * 179.97438 * 16 14 13 18 18 C 1.53245 * 108.52128 * 231.20765 * 17 16 14 19 19 N 1.46900 * 109.33836 * 306.16902 * 18 17 16 20 20 C 1.46896 * 111.00221 * 187.25551 * 19 18 17 21 21 C 1.50697 * 109.47160 * 169.99948 * 20 19 18 22 22 C 1.38426 * 122.53810 * 269.94688 * 21 20 19 23 23 C 1.33396 * 114.91899 * 180.02562 * 22 21 20 24 24 S 1.75882 * 109.59251 * 0.02562 * 23 22 21 25 25 C 1.33383 * 122.54123 * 89.97754 * 21 20 19 26 26 C 1.46898 * 111.26975 * 63.10049 * 19 18 17 27 27 C 1.47082 * 120.88137 * 0.02562 * 16 14 13 28 28 H 4.40643 * 5.51493 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47162 * 341.56312 * 3 2 1 30 30 H 1.09005 * 109.46724 * 221.56750 * 3 2 1 31 31 H 0.96996 * 119.99661 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46931 * 330.00644 * 13 4 3 33 33 H 1.08995 * 109.47221 * 210.00499 * 13 4 3 34 34 H 1.09002 * 109.63054 * 111.49292 * 17 16 14 35 35 H 1.09000 * 109.62998 * 350.91662 * 17 16 14 36 36 H 1.09000 * 109.49048 * 186.21180 * 18 17 16 37 37 H 1.08995 * 109.49269 * 66.12816 * 18 17 16 38 38 H 1.09011 * 109.47060 * 49.99809 * 20 19 18 39 39 H 1.08997 * 109.46876 * 290.00240 * 20 19 18 40 40 H 1.07995 * 122.54471 * 0.05285 * 22 21 20 41 41 H 1.08000 * 125.20215 * 180.27102 * 23 22 21 42 42 H 1.08003 * 125.20043 * 359.97438 * 25 21 20 43 43 H 1.09002 * 109.48697 * 56.85679 * 26 19 18 44 44 H 1.08996 * 109.49384 * 176.93542 * 26 19 18 45 45 H 1.09003 * 109.62302 * 248.50110 * 27 16 14 46 46 H 1.08999 * 109.62438 * 8.88666 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2778 -1.3531 5 6 3.4816 -0.7563 -2.1808 6 1 4.1199 -0.5749 -3.0328 7 6 3.0130 -2.0376 -1.9248 8 7 1.9285 -2.2090 -1.1990 9 14 3.9217 -3.5187 -2.6105 10 1 4.9467 -3.9664 -1.6336 11 1 2.9573 -4.6210 -2.8563 12 1 4.5835 -3.1462 -3.8866 13 6 3.2511 1.6613 -1.8207 14 6 4.6230 2.1894 -1.4894 15 8 5.4242 1.4801 -0.9185 16 7 4.9594 3.4502 -1.8266 17 6 6.2927 3.9856 -1.5123 18 6 6.1211 5.3266 -0.7908 19 7 5.2723 6.2100 -1.6014 20 6 5.2231 7.5624 -1.0301 21 6 4.5544 8.4959 -2.0060 22 6 5.2602 9.1984 -2.9675 23 6 4.5165 9.9813 -3.7507 24 16 2.8269 9.8526 -3.2794 25 6 3.2376 8.7084 -2.0084 26 6 3.9212 5.6549 -1.7574 27 6 4.0024 4.3276 -2.5178 28 1 -1.0500 0.0002 0.0000 29 1 3.0098 -0.9741 0.3250 30 1 3.0090 0.7697 0.6819 31 1 1.6014 -3.1044 -1.0198 32 1 2.4968 2.2758 -1.3292 33 1 3.0999 1.6942 -2.8996 34 1 6.8541 4.1351 -2.4346 35 1 6.8245 3.2874 -0.8658 36 1 7.0971 5.7904 -0.6482 37 1 5.6517 5.1605 0.1788 38 1 6.2370 7.9100 -0.8313 39 1 4.6565 7.5432 -0.0992 40 1 6.3318 9.1184 -3.0757 41 1 4.8937 10.5967 -4.5541 42 1 2.5315 8.2484 -1.3328 43 1 3.4825 5.4842 -0.7743 44 1 3.3018 6.3568 -2.3157 45 1 4.3432 4.5101 -3.5370 46 1 3.0209 3.8539 -2.5392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491544391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = 90.817459 kcal Electronic energy + Delta-G solvation = -27951.856366 eV Core-core repulsion = 24163.867503 eV Total energy + Delta-G solvation = -3787.988863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14994 -39.78524 -38.29705 -37.41349 -35.35258 -33.54094 -33.22822 -32.22987 -30.97891 -29.62688 -28.43844 -27.84742 -26.02971 -24.77935 -23.84604 -23.32004 -21.95647 -19.90470 -19.61167 -19.38366 -18.46602 -18.22010 -18.04593 -17.08833 -16.63340 -16.45026 -16.37098 -16.09960 -15.95737 -15.50817 -15.21460 -15.09590 -14.90939 -14.22070 -14.14668 -13.90495 -13.79681 -13.54725 -13.44583 -13.25080 -13.09722 -12.92728 -12.78333 -12.57260 -12.55735 -12.28266 -12.24905 -12.20132 -12.06563 -11.97076 -11.50218 -11.04387 -10.80693 -10.58132 -10.33438 -9.75756 -9.61556 -9.32996 -9.15174 -8.95833 -7.86684 -5.29008 0.15558 0.84034 1.16034 1.43752 1.48657 1.54968 1.77087 1.83902 2.03962 2.35785 2.51058 2.58584 3.04375 3.25768 3.73966 3.75805 3.87979 3.98608 4.06328 4.11179 4.14800 4.28181 4.32887 4.34948 4.49456 4.52711 4.59125 4.61083 4.65070 4.69047 4.78614 4.84110 4.87879 4.88821 4.90478 5.09137 5.18861 5.22083 5.54696 5.60047 5.61369 5.63141 5.66644 6.01008 6.02960 6.22556 6.52198 7.04537 7.34556 7.40033 7.76600 8.17862 9.14761 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002330 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.051446 B =12012.396563 C =12640.269329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.139 4.139 3 C 0.279 3.721 4 N -0.579 5.579 5 C -0.265 4.265 6 H 0.063 0.937 7 C -0.039 4.039 8 N -0.906 5.906 9 Si 0.957 3.043 10 H -0.293 1.293 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.136 3.864 14 C 0.486 3.514 15 O -0.573 6.573 16 N -0.618 5.618 17 C 0.114 3.886 18 C 0.055 3.945 19 N -0.534 5.534 20 C 0.116 3.884 21 C -0.098 4.098 22 C -0.127 4.127 23 C -0.218 4.218 24 S 0.088 5.912 25 C -0.217 4.217 26 C 0.044 3.956 27 C 0.112 3.888 28 H 0.227 0.773 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.029 0.971 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.033 0.967 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 28.344 -2.302 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.297 5.297 5 C -0.395 4.395 6 H 0.081 0.919 7 C -0.236 4.236 8 N -0.550 5.550 9 Si 0.786 3.214 10 H -0.220 1.220 11 H -0.218 1.218 12 H -0.198 1.198 13 C 0.006 3.994 14 C 0.273 3.727 15 O -0.451 6.451 16 N -0.354 5.354 17 C -0.009 4.009 18 C -0.074 4.074 19 N -0.258 5.258 20 C -0.013 4.013 21 C -0.111 4.111 22 C -0.157 4.157 23 C -0.353 4.353 24 S 0.352 5.648 25 C -0.353 4.353 26 C -0.084 4.084 27 C -0.010 4.010 28 H 0.244 0.756 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.168 0.832 41 H 0.197 0.803 42 H 0.187 0.813 43 H 0.051 0.949 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.895 28.483 -2.972 28.783 hybrid contribution 1.145 -1.950 0.977 2.463 sum 4.040 26.533 -1.995 26.913 Atomic orbital electron populations 1.25003 0.96180 1.05484 1.02769 1.24354 0.95687 0.96218 0.97911 1.17401 0.83379 0.98505 0.85370 1.43682 1.74120 1.00761 1.11170 1.19237 1.23659 0.87988 1.08607 0.91899 1.25494 0.96860 1.00136 1.01139 1.70264 1.20230 1.20848 1.43661 0.85436 0.77989 0.79892 0.78089 1.22006 1.21834 1.19785 1.20834 0.91924 0.86155 1.00529 1.22802 0.91715 0.80789 0.77404 1.90607 1.53407 1.57920 1.43184 1.48462 1.15338 1.12375 1.59267 1.21642 0.84486 0.94212 1.00546 1.22393 0.98984 0.92275 0.93711 1.61913 1.11804 1.01888 1.50235 1.20757 1.01238 0.86149 0.93191 1.18867 0.92855 0.99976 0.99445 1.20219 1.02028 0.97567 0.95888 1.25869 0.95733 1.07141 1.06525 1.84362 1.08523 1.42550 1.29362 1.25705 0.99328 1.05334 1.04918 1.22502 0.90617 0.95783 0.99528 1.21941 0.93311 0.89450 0.96343 0.75600 0.92276 0.93404 0.94179 0.89385 0.89360 0.90582 0.91064 0.87379 0.95317 0.88367 0.93713 0.83239 0.80283 0.81333 0.94860 0.88048 0.90134 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.04 19.25 74.32 1.43 -10.61 16 2 C -0.14 -6.79 11.50 31.12 0.36 -6.43 16 3 C 0.28 14.14 5.41 84.57 0.46 14.60 16 4 N -0.58 -29.54 1.98 -716.93 -1.42 -30.96 16 5 C -0.27 -14.96 9.63 84.03 0.81 -14.15 16 6 H 0.06 3.56 7.92 -2.91 -0.02 3.54 16 7 C -0.04 -2.24 4.82 84.86 0.41 -1.83 16 8 N -0.91 -52.98 9.61 21.65 0.21 -52.77 16 9 Si 0.96 46.61 29.61 68.60 2.03 48.64 16 10 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.14 5.44 4.52 85.63 0.39 5.83 16 14 C 0.49 19.02 7.78 87.65 0.68 19.71 16 15 O -0.57 -27.93 15.88 -3.03 -0.05 -27.98 16 16 N -0.62 -18.00 3.01 -818.03 -2.46 -20.46 16 17 C 0.11 2.89 6.60 86.35 0.57 3.46 16 18 C 0.05 1.03 5.62 86.39 0.49 1.51 16 19 N -0.53 -9.11 4.62 -899.94 -4.16 -13.27 16 20 C 0.12 1.58 5.23 85.56 0.45 2.03 16 21 C -0.10 -1.38 4.80 -20.92 -0.10 -1.48 16 22 C -0.13 -1.68 9.98 21.22 0.21 -1.47 16 23 C -0.22 -2.67 11.23 66.72 0.75 -1.92 16 24 S 0.09 1.15 23.34 -56.49 -1.32 -0.16 16 25 C -0.22 -2.96 9.20 66.72 0.61 -2.35 16 26 C 0.04 0.80 5.38 86.37 0.46 1.26 16 27 C 0.11 2.43 6.50 86.33 0.56 3.00 16 28 H 0.23 7.79 7.80 -4.42 -0.03 7.75 16 29 H 0.06 3.37 6.59 -2.38 -0.02 3.36 16 30 H 0.05 2.23 8.12 -2.38 -0.02 2.21 16 31 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 32 H 0.09 3.11 7.59 -2.39 -0.02 3.09 16 33 H 0.09 3.34 7.89 -2.39 -0.02 3.32 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.14 7.06 -2.39 -0.02 2.12 16 36 H 0.11 1.51 7.99 -2.39 -0.02 1.50 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.10 1.09 7.96 -2.38 -0.02 1.07 16 39 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.17 1.96 8.02 -2.91 -0.02 1.94 16 43 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 1.60 5.78 -2.39 -0.01 1.58 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.10 1.98 6.02 -2.39 -0.01 1.97 16 Total: -1.00 -72.13 390.65 2.34 -69.79 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 8.54 Total: 11.14 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -7.83 Total: -117.46 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.32 Total: -0.16 kcal Total: -72.13 2.34 -69.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491544391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.608 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds