Wall clock time and date at job start Wed Apr 1 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35955 * 116.99899 * 2 1 4 4 C 1.38070 * 120.00220 * 359.71834 * 3 2 1 5 5 C 1.39988 * 119.84050 * 179.75638 * 4 3 2 6 6 C 1.46965 * 120.07609 * 180.27584 * 5 4 3 7 7 C 1.35026 * 119.99453 * 180.26912 * 6 5 4 8 8 C 1.46255 * 119.99868 * 179.97438 * 7 6 5 9 9 O 1.21727 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00255 * 179.97438 * 8 7 6 11 11 C 1.47431 * 125.64608 * 359.69680 * 10 8 7 12 12 C 1.55126 * 104.72124 * 155.81764 * 11 10 8 13 13 H 1.09004 * 111.18879 * 279.18467 * 12 11 10 14 14 O 1.42901 * 110.90741 * 155.27395 * 12 11 10 15 15 C 1.55149 * 101.48877 * 37.29112 * 12 11 10 16 16 C 1.47024 * 125.65319 * 179.97438 * 10 8 7 17 17 H 1.09002 * 109.87443 * 61.60724 * 16 10 8 18 18 C 1.53002 * 109.88117 * 300.60176 * 16 10 8 19 19 C 1.40021 * 119.83925 * 0.54167 * 5 4 3 20 20 C 1.37655 * 120.00336 * 359.73275 * 19 5 4 21 21 C 1.39054 * 120.15951 * 359.97307 * 20 19 5 22 22 O 1.35610 * 119.91911 * 180.02562 * 21 20 19 23 23 C 1.34761 * 117.00086 * 354.38392 * 22 21 20 24 24 H 1.07997 * 119.99977 * 5.06148 * 23 22 21 25 25 C 1.38706 * 119.99702 * 185.06384 * 23 22 21 26 26 N 1.31519 * 120.00502 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99891 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47079 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47677 * 119.99821 * 27 25 23 30 30 H 1.48499 * 109.47065 * 240.00023 * 27 25 23 31 31 H 1.08996 * 109.47742 * 300.00333 * 1 2 3 32 32 H 1.09004 * 109.46963 * 60.00823 * 1 2 3 33 33 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.08069 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.00545 * 0.26547 * 6 5 4 36 36 H 1.08001 * 120.00462 * 359.97438 * 7 6 5 37 37 H 1.09000 * 110.35977 * 274.74524 * 11 10 8 38 38 H 1.09003 * 110.36567 * 37.06392 * 11 10 8 39 39 H 0.96700 * 113.99805 * 67.97144 * 14 12 11 40 40 H 1.09007 * 110.72243 * 205.97010 * 15 12 11 41 41 H 1.09002 * 110.87374 * 82.76635 * 15 12 11 42 42 H 1.08996 * 109.47195 * 61.45102 * 18 16 10 43 43 H 1.09003 * 109.46642 * 181.44841 * 18 16 10 44 44 H 1.08996 * 109.46889 * 301.44398 * 18 16 10 45 45 H 1.08002 * 119.99770 * 179.74719 * 19 5 4 46 46 H 1.08001 * 119.92008 * 179.97438 * 20 19 5 47 47 H 0.96998 * 120.00509 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2942 2.3693 -0.0059 5 6 1.9332 3.6149 -0.0007 6 6 1.1378 4.8507 -0.0008 7 6 1.7559 6.0512 -0.0013 8 6 0.9645 7.2811 -0.0019 9 8 -0.2514 7.2225 -0.0025 10 7 1.5813 8.4794 -0.0019 11 6 3.0398 8.6950 0.0051 12 6 3.2328 10.1050 -0.6122 13 1 3.1860 10.0683 -1.7007 14 8 4.4607 10.6899 -0.1739 15 6 2.0140 10.8674 -0.0286 16 6 0.9113 9.7881 -0.0031 17 1 0.3078 9.8962 0.8981 18 6 0.0233 9.9170 -1.2423 19 6 3.3319 3.6803 -0.0011 20 6 4.0752 2.5217 -0.0009 21 6 3.4405 1.2845 0.0001 22 8 4.1776 0.1462 0.0007 23 6 5.5131 0.2820 -0.1172 24 1 5.9572 1.2664 -0.1244 25 6 6.3173 -0.8425 -0.2294 26 7 5.7766 -2.0414 -0.2202 27 14 8.1686 -0.6543 -0.3922 28 1 8.5230 0.7878 -0.3755 29 1 8.8378 -1.3419 0.7413 30 1 8.6170 -1.2589 -1.6722 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 0.2156 2.3144 -0.0101 35 1 0.0591 4.7987 -0.0005 36 1 2.8346 6.1033 -0.0012 37 1 3.4220 8.6695 1.0256 38 1 3.5375 7.9422 -0.6062 39 1 5.2505 10.2471 -0.5133 40 1 1.7289 11.6944 -0.6789 41 1 2.2264 11.2261 0.9786 42 1 -0.7446 9.1438 -1.2210 43 1 -0.4498 10.8989 -1.2497 44 1 0.6319 9.8002 -2.1390 45 1 3.8275 4.6399 -0.0012 46 1 5.1539 2.5738 -0.0016 47 1 6.3390 -2.8278 -0.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492051865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:09 Heat of formation + Delta-G solvation = -97.671632 kcal Electronic energy + Delta-G solvation = -29564.400804 eV Core-core repulsion = 25293.192819 eV Total energy + Delta-G solvation = -4271.207985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42432 -39.73018 -38.19861 -37.70328 -36.61116 -35.95266 -33.19533 -32.45067 -31.82592 -30.16394 -29.76726 -28.62670 -26.62263 -26.18652 -25.60897 -24.12939 -22.61799 -21.78093 -21.26501 -19.92834 -18.67256 -18.23890 -18.09048 -17.81673 -17.00275 -16.34898 -15.78882 -15.41590 -15.34371 -15.22926 -14.76078 -14.59864 -14.30215 -14.02084 -13.99930 -13.82777 -13.62527 -13.61097 -13.46885 -13.17146 -12.81748 -12.46605 -12.25009 -12.14121 -11.84452 -11.76211 -11.72869 -11.49220 -11.37627 -11.15989 -11.08408 -10.99925 -10.81261 -10.70547 -10.55198 -10.51468 -9.75604 -9.60140 -9.45444 -8.91886 -8.76604 -8.01676 -6.94801 -6.64918 -4.16149 0.97792 2.07890 2.48932 2.79012 3.02463 3.03379 3.09476 3.50624 3.74876 3.80165 3.91669 4.08159 4.21193 4.43398 4.56655 4.80360 4.84154 4.88200 4.94720 4.98415 5.09687 5.17309 5.26061 5.38595 5.39680 5.44996 5.46415 5.52441 5.53189 5.56155 5.62930 5.66989 5.78614 5.81267 5.96134 5.99362 6.16598 6.21395 6.40529 6.46156 6.56067 6.81582 6.96617 7.05620 7.16716 7.22177 7.42385 7.45703 7.75606 8.04682 8.24856 8.78195 9.46939 10.50929 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.002356 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.005325 B =11882.791965 C =14160.060397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.038 3.962 7 C -0.278 4.278 8 C 0.574 3.426 9 O -0.553 6.553 10 N -0.616 5.616 11 C 0.071 3.929 12 C 0.090 3.910 13 H 0.076 0.924 14 O -0.557 6.557 15 C -0.121 4.121 16 C 0.137 3.863 17 H 0.078 0.922 18 C -0.164 4.164 19 C -0.059 4.059 20 C -0.225 4.225 21 C 0.149 3.851 22 O -0.147 6.147 23 C -0.390 4.390 24 H 0.098 0.902 25 C 0.041 3.959 26 N -0.844 5.844 27 Si 0.945 3.055 28 H -0.264 1.264 29 H -0.274 1.274 30 H -0.274 1.274 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.384 0.616 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.137 0.863 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 19.836 -1.316 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.018 3.982 7 C -0.299 4.299 8 C 0.369 3.631 9 O -0.433 6.433 10 N -0.352 5.352 11 C -0.053 4.053 12 C 0.031 3.969 13 H 0.094 0.906 14 O -0.362 6.362 15 C -0.159 4.159 16 C 0.034 3.966 17 H 0.096 0.904 18 C -0.222 4.222 19 C -0.077 4.077 20 C -0.245 4.245 21 C 0.092 3.908 22 O -0.047 6.047 23 C -0.466 4.466 24 H 0.115 0.885 25 C -0.166 4.166 26 N -0.476 5.476 27 Si 0.769 3.231 28 H -0.188 1.188 29 H -0.199 1.199 30 H -0.199 1.199 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.155 0.845 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.748 19.408 -1.002 20.266 hybrid contribution 1.167 -0.147 -0.343 1.225 sum -4.581 19.262 -1.345 19.845 Atomic orbital electron populations 1.22919 0.80145 1.03095 1.00431 1.86236 1.19593 1.26174 1.89700 1.18048 0.89386 0.84622 1.07255 1.20881 0.98616 0.90900 1.05104 1.18157 0.92770 0.91377 1.14539 1.22243 0.99143 0.90926 0.85916 1.22441 0.99754 0.91383 1.16280 1.18076 0.87226 0.82529 0.75299 1.90765 1.14008 1.86941 1.51584 1.48245 1.06591 1.05292 1.75029 1.23059 0.82186 0.97926 1.02151 1.22977 0.85010 0.91386 0.97571 0.90627 1.86516 1.15408 1.58392 1.75862 1.22717 0.92692 0.97388 1.03082 1.21492 0.93854 0.81876 0.99423 0.90446 1.22172 1.00435 1.02658 0.96935 1.20909 0.92490 0.97290 0.97013 1.20828 1.00705 0.90732 1.12201 1.18883 0.88269 0.87646 0.96001 1.83989 1.19762 1.25867 1.75125 1.21568 0.78358 0.95107 1.51543 0.88452 1.25423 1.00936 0.94143 0.96086 1.70053 1.36608 0.97839 1.43077 0.85579 0.79870 0.79113 0.78501 1.18820 1.19898 1.19902 0.93438 0.93424 0.88948 0.85833 0.85951 0.85877 0.90385 0.89999 0.76854 0.89396 0.89562 0.90672 0.91775 0.92595 0.86754 0.84499 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.41 10.28 -34.21 -0.35 -6.76 16 3 C 0.05 1.10 6.70 -39.12 -0.26 0.84 16 4 C -0.14 -2.42 8.77 -38.99 -0.34 -2.77 16 5 C -0.17 -2.86 5.87 -105.04 -0.62 -3.48 16 6 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 7 C -0.28 -3.88 8.85 -37.50 -0.33 -4.21 16 8 C 0.57 8.31 7.55 -13.04 -0.10 8.21 16 9 O -0.55 -9.60 15.12 5.16 0.08 -9.52 16 10 N -0.62 -6.99 3.08 -164.56 -0.51 -7.50 16 11 C 0.07 0.60 6.27 -2.41 -0.02 0.59 16 12 C 0.09 0.65 4.44 -24.47 -0.11 0.54 16 13 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 14 O -0.56 -3.94 13.47 -35.23 -0.47 -4.41 16 15 C -0.12 -0.90 6.23 -24.90 -0.16 -1.05 16 16 C 0.14 1.32 3.49 -66.95 -0.23 1.09 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.16 -1.54 9.07 37.16 0.34 -1.20 16 19 C -0.06 -1.02 9.40 -39.13 -0.37 -1.38 16 20 C -0.23 -4.58 9.14 -39.49 -0.36 -4.94 16 21 C 0.15 3.51 6.67 -38.76 -0.26 3.25 16 22 O -0.15 -4.07 9.52 -13.93 -0.13 -4.21 16 23 C -0.39 -10.35 9.48 30.91 0.29 -10.06 16 24 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 25 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 26 N -0.84 -23.78 13.67 55.48 0.76 -23.02 16 27 Si 0.95 19.30 29.55 -169.99 -5.02 14.27 16 28 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 29 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 30 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 31 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 32 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.12 1.86 6.28 -52.49 -0.33 1.53 16 35 H 0.12 1.84 7.52 -52.49 -0.39 1.44 16 36 H 0.12 1.51 4.85 -52.49 -0.25 1.26 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.38 1.18 9.12 45.56 0.42 1.60 16 40 H 0.09 0.54 7.83 -51.93 -0.41 0.13 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.91 6.73 -51.93 -0.35 0.56 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.11 1.62 6.15 -52.49 -0.32 1.30 16 46 H 0.14 2.70 5.61 -52.49 -0.29 2.41 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -33.45 389.73 -7.22 -40.68 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.47 Total: 6.54 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.98 Total: -11.95 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.25 Total: -30.52 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.88 Total: -24.90 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -7.22 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.996 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds