Wall clock time and date at job start Wed Apr 1 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 117.00076 * 2 1 4 4 C 1.38076 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.39973 * 119.84094 * 180.02562 * 4 3 2 6 6 C 1.46972 * 120.07914 * 179.97438 * 5 4 3 7 7 C 1.35020 * 119.99869 * 135.35373 * 6 5 4 8 8 C 1.46257 * 120.00426 * 346.80876 * 7 6 5 9 9 O 1.21727 * 119.99529 * 353.08450 * 8 7 6 10 10 N 1.34774 * 120.00056 * 173.08272 * 8 7 6 11 11 C 1.47416 * 125.65073 * 0.02738 * 10 8 7 12 12 C 1.54919 * 104.83196 * 204.09249 * 11 10 8 13 13 H 1.08998 * 111.00218 * 204.91474 * 12 11 10 14 14 O 1.42899 * 111.00090 * 81.10133 * 12 11 10 15 15 C 1.55159 * 101.57847 * 322.99069 * 12 11 10 16 16 C 1.47022 * 125.64457 * 179.71629 * 10 8 7 17 17 H 1.09007 * 109.88503 * 59.55790 * 16 10 8 18 18 C 1.53004 * 109.88713 * 298.39500 * 16 10 8 19 19 C 1.40028 * 119.84468 * 0.02562 * 5 4 3 20 20 C 1.37643 * 119.99698 * 359.97438 * 19 5 4 21 21 C 1.39067 * 120.16465 * 359.72681 * 20 19 5 22 22 O 1.35608 * 119.92354 * 180.29458 * 21 20 19 23 23 C 1.34762 * 117.00066 * 7.31930 * 22 21 20 24 24 H 1.07994 * 120.00141 * 6.20790 * 23 22 21 25 25 C 1.38708 * 119.99651 * 186.21342 * 23 22 21 26 26 N 1.31524 * 119.99536 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00412 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46951 * 90.00114 * 27 25 23 29 29 H 1.48500 * 109.46992 * 210.00335 * 27 25 23 30 30 H 1.48499 * 109.46829 * 330.00636 * 27 25 23 31 31 H 1.09003 * 109.47238 * 60.00228 * 1 2 3 32 32 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46936 * 300.00306 * 1 2 3 34 34 H 1.08005 * 120.08110 * 0.03071 * 4 3 2 35 35 H 1.08001 * 120.00049 * 315.35137 * 6 5 4 36 36 H 1.08000 * 119.99969 * 166.81202 * 7 6 5 37 37 H 1.09000 * 110.36750 * 322.92700 * 11 10 8 38 38 H 1.09000 * 110.37308 * 85.14353 * 11 10 8 39 39 H 0.96694 * 114.00165 * 61.45910 * 14 12 11 40 40 H 1.08994 * 110.71935 * 153.86966 * 15 12 11 41 41 H 1.09005 * 110.71596 * 277.13592 * 15 12 11 42 42 H 1.09005 * 109.46598 * 61.44977 * 18 16 10 43 43 H 1.08997 * 109.47338 * 181.45234 * 18 16 10 44 44 H 1.08995 * 109.46776 * 301.45815 * 18 16 10 45 45 H 1.07997 * 120.00345 * 179.97438 * 19 5 4 46 46 H 1.08006 * 119.92039 * 179.97438 * 20 19 5 47 47 H 0.97005 * 119.99867 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 -0.0011 6 6 1.1379 4.8507 -0.0022 7 6 1.4718 5.8691 0.8190 8 6 2.4284 5.6506 1.9035 9 8 2.8275 4.5263 2.1456 10 7 2.8680 6.6938 2.6348 11 6 2.4688 8.1009 2.4509 12 6 3.6380 8.9258 3.0446 13 1 3.2982 9.9106 3.3650 14 8 4.7129 9.0369 2.1096 15 6 4.0466 8.0551 4.2621 16 6 3.8204 6.6161 3.7522 17 1 4.7643 6.1947 3.4063 18 6 3.2397 5.7497 4.8716 19 6 3.3319 3.6803 -0.0016 20 6 4.0751 2.5218 -0.0011 21 6 3.4405 1.2844 0.0057 22 8 4.1775 0.1462 0.0123 23 6 5.5097 0.2807 0.1648 24 1 5.9338 1.2514 0.3748 25 6 6.3361 -0.8275 0.0518 26 7 7.6362 -0.6963 0.2012 27 14 5.6025 -2.5067 -0.3109 28 1 5.5406 -2.7129 -1.7802 29 1 6.4509 -3.5604 0.3016 30 1 4.2326 -2.5816 0.2575 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2156 2.3144 -0.0005 35 1 0.2864 4.9443 -0.6599 36 1 1.0325 6.8452 0.6750 37 1 2.3462 8.3251 1.3912 38 1 1.5446 8.3068 2.9908 39 1 4.4751 9.4895 1.2889 40 1 5.0939 8.2162 4.5173 41 1 3.4038 8.2627 5.1177 42 1 3.0721 4.7391 4.4990 43 1 3.9396 5.7178 5.7066 44 1 2.2936 6.1749 5.2065 45 1 3.8276 4.6398 -0.0025 46 1 5.1539 2.5738 -0.0019 47 1 8.2142 -1.4712 0.1218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492051870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:15 Heat of formation + Delta-G solvation = -79.165418 kcal Electronic energy + Delta-G solvation = -30973.318974 eV Core-core repulsion = 26702.913478 eV Total energy + Delta-G solvation = -4270.405496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36817 -39.59334 -38.21604 -37.60884 -36.28871 -35.43397 -33.08038 -32.31404 -31.71132 -30.29203 -29.51242 -28.62136 -26.56748 -26.09571 -25.27805 -23.93600 -22.29569 -21.52520 -21.23438 -20.06031 -18.64263 -17.98262 -17.81707 -17.59420 -16.91097 -16.20908 -15.79633 -15.41516 -15.18934 -14.99765 -14.59755 -14.43446 -14.24555 -13.90709 -13.83348 -13.64053 -13.56865 -13.46118 -13.10134 -12.77610 -12.58095 -12.39773 -12.19193 -12.14127 -12.03605 -11.63217 -11.53961 -11.41943 -11.32777 -11.01581 -10.98416 -10.77860 -10.62340 -10.46727 -10.39591 -10.13825 -9.49677 -9.33008 -9.14275 -8.69571 -8.55120 -7.78435 -6.76482 -6.36817 -3.97056 1.15075 2.26936 2.56878 3.05023 3.29444 3.33060 3.53080 3.58328 3.79505 3.98486 4.14858 4.28854 4.32627 4.56318 4.63535 4.86131 4.89102 5.00553 5.08212 5.14849 5.15796 5.23882 5.28602 5.44178 5.45253 5.51384 5.52516 5.55145 5.60191 5.63142 5.69204 5.79891 5.83823 6.04489 6.13449 6.24882 6.26829 6.39215 6.41972 6.58702 6.66219 6.98888 7.13100 7.29756 7.39352 7.59820 7.65859 7.73242 8.01401 8.22293 8.52113 8.98501 9.63650 10.70257 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.003113 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.695389 B = 8992.961582 C =10382.901128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.041 3.959 4 C -0.137 4.137 5 C -0.143 4.143 6 C 0.019 3.981 7 C -0.253 4.253 8 C 0.556 3.444 9 O -0.505 6.505 10 N -0.614 5.614 11 C 0.071 3.929 12 C 0.088 3.912 13 H 0.078 0.922 14 O -0.554 6.554 15 C -0.122 4.122 16 C 0.139 3.861 17 H 0.078 0.922 18 C -0.163 4.163 19 C -0.018 4.018 20 C -0.204 4.204 21 C 0.157 3.843 22 O -0.200 6.200 23 C -0.383 4.383 24 H 0.107 0.893 25 C 0.064 3.936 26 N -0.876 5.876 27 Si 0.903 3.097 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.254 1.254 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.380 0.620 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.102 0.898 46 H 0.138 0.862 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 20.181 3.916 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.003 4.003 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.001 4.001 7 C -0.274 4.274 8 C 0.348 3.652 9 O -0.381 6.381 10 N -0.351 5.351 11 C -0.053 4.053 12 C 0.029 3.971 13 H 0.095 0.905 14 O -0.359 6.359 15 C -0.160 4.160 16 C 0.036 3.964 17 H 0.096 0.904 18 C -0.221 4.221 19 C -0.037 4.037 20 C -0.224 4.224 21 C 0.103 3.897 22 O -0.104 6.104 23 C -0.459 4.459 24 H 0.124 0.876 25 C -0.139 4.139 26 N -0.513 5.513 27 Si 0.728 3.272 28 H -0.199 1.199 29 H -0.208 1.208 30 H -0.178 1.178 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.227 0.773 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.120 0.880 46 H 0.155 0.845 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.552 18.598 4.468 23.442 hybrid contribution -0.730 0.097 -0.495 0.887 sum -14.282 18.695 3.973 23.860 Atomic orbital electron populations 1.22863 0.80422 1.02759 1.00323 1.86164 1.19425 1.26680 1.90226 1.17918 0.89216 0.84360 1.08826 1.20665 0.98049 0.90887 1.06044 1.18093 0.92875 0.91284 1.12144 1.22301 0.93882 0.91489 0.92388 1.22662 1.05287 0.99900 0.99520 1.18124 0.81242 0.83470 0.82403 1.91004 1.56782 1.21520 1.68755 1.48448 1.45916 1.06470 1.34249 1.22998 0.97860 0.82776 1.01644 1.22947 0.86728 0.97246 0.90221 0.90464 1.86565 1.36614 1.81905 1.30850 1.22812 1.03648 0.93325 0.96196 1.21445 0.93078 0.95151 0.86738 0.90352 1.22149 1.00465 1.01810 0.97677 1.20565 0.91871 0.96795 0.94432 1.20871 1.00840 0.90645 1.10015 1.18561 0.87691 0.86943 0.96478 1.83598 1.20494 1.27334 1.78952 1.20848 0.77720 0.98744 1.48559 0.87572 1.24475 0.94329 0.99380 0.95766 1.69643 1.02510 1.32003 1.47162 0.86197 0.80314 0.81570 0.79099 1.19892 1.20837 1.17777 0.93577 0.89239 0.93569 0.86377 0.85880 0.86203 0.90337 0.90940 0.77267 0.89151 0.89252 0.90675 0.91890 0.92944 0.87990 0.84490 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.31 -6.67 10.28 -34.21 -0.35 -7.02 16 3 C 0.04 0.92 6.70 -39.13 -0.26 0.66 16 4 C -0.14 -2.57 8.77 -38.99 -0.34 -2.91 16 5 C -0.14 -2.61 4.43 -105.04 -0.47 -3.07 16 6 C 0.02 0.26 9.79 -37.19 -0.36 -0.10 16 7 C -0.25 -3.21 9.27 -37.51 -0.35 -3.56 16 8 C 0.56 8.61 6.63 -13.04 -0.09 8.53 16 9 O -0.51 -10.14 11.53 5.17 0.06 -10.08 16 10 N -0.61 -7.59 3.06 -164.69 -0.50 -8.09 16 11 C 0.07 0.56 6.21 -2.53 -0.02 0.54 16 12 C 0.09 0.63 4.43 -24.58 -0.11 0.52 16 13 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 14 O -0.55 -4.89 13.47 -35.23 -0.47 -5.36 16 15 C -0.12 -1.02 6.22 -24.89 -0.15 -1.17 16 16 C 0.14 1.68 3.46 -66.95 -0.23 1.45 16 17 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 18 C -0.16 -1.98 9.11 37.16 0.34 -1.64 16 19 C -0.02 -0.37 6.74 -39.13 -0.26 -0.63 16 20 C -0.20 -4.86 9.09 -39.49 -0.36 -5.21 16 21 C 0.16 3.99 6.67 -38.76 -0.26 3.73 16 22 O -0.20 -5.70 8.35 -13.94 -0.12 -5.82 16 23 C -0.38 -11.39 9.87 30.91 0.31 -11.08 16 24 H 0.11 3.23 5.57 -52.49 -0.29 2.94 16 25 C 0.06 1.88 5.49 -17.51 -0.10 1.78 16 26 N -0.88 -26.08 13.96 55.48 0.77 -25.30 16 27 Si 0.90 22.79 28.62 -169.99 -4.86 17.92 16 28 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.25 -6.57 7.11 56.52 0.40 -6.17 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.12 1.81 6.28 -52.48 -0.33 1.48 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.09 6.97 -52.49 -0.37 0.72 16 37 H 0.08 0.51 7.24 -51.93 -0.38 0.14 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.38 1.76 9.11 45.56 0.42 2.18 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.57 7.84 -51.93 -0.41 0.17 16 42 H 0.07 1.18 6.89 -51.93 -0.36 0.83 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.97 7.23 -52.49 -0.38 1.59 16 46 H 0.14 3.40 5.74 -52.48 -0.30 3.10 16 47 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -36.67 384.84 -7.11 -43.77 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.71 Total: 4.90 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.72 Total: -10.71 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.27 Total: -33.40 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.88 Total: -28.28 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.86 Total: 17.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.67 -7.11 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.393 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds