Wall clock time and date at job start Wed Apr 1 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 117.00076 * 2 1 4 4 C 1.38076 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.39973 * 119.84094 * 180.02562 * 4 3 2 6 6 C 1.46972 * 120.07914 * 179.97438 * 5 4 3 7 7 C 1.35020 * 119.99869 * 135.35373 * 6 5 4 8 8 C 1.46257 * 120.00426 * 346.80876 * 7 6 5 9 9 O 1.21727 * 119.99529 * 353.08450 * 8 7 6 10 10 N 1.34774 * 120.00056 * 173.08272 * 8 7 6 11 11 C 1.47416 * 125.65073 * 0.02738 * 10 8 7 12 12 C 1.54919 * 104.83196 * 204.09249 * 11 10 8 13 13 H 1.08998 * 111.00218 * 204.91474 * 12 11 10 14 14 O 1.42899 * 111.00090 * 81.10133 * 12 11 10 15 15 C 1.55159 * 101.57847 * 322.99069 * 12 11 10 16 16 C 1.47022 * 125.64457 * 179.71629 * 10 8 7 17 17 H 1.09007 * 109.88503 * 59.55790 * 16 10 8 18 18 C 1.53004 * 109.88713 * 298.39500 * 16 10 8 19 19 C 1.40028 * 119.84468 * 0.02562 * 5 4 3 20 20 C 1.37643 * 119.99698 * 359.97438 * 19 5 4 21 21 C 1.39067 * 120.16465 * 359.72681 * 20 19 5 22 22 O 1.35608 * 119.92354 * 180.29458 * 21 20 19 23 23 C 1.34762 * 117.00066 * 7.31930 * 22 21 20 24 24 H 1.07994 * 120.00141 * 6.20790 * 23 22 21 25 25 C 1.38708 * 119.99651 * 186.21342 * 23 22 21 26 26 N 1.31524 * 119.99536 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00412 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46951 * 90.00114 * 27 25 23 29 29 H 1.48500 * 109.46992 * 210.00335 * 27 25 23 30 30 H 1.48499 * 109.46829 * 330.00636 * 27 25 23 31 31 H 1.09003 * 109.47238 * 60.00228 * 1 2 3 32 32 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46936 * 300.00306 * 1 2 3 34 34 H 1.08005 * 120.08110 * 0.03071 * 4 3 2 35 35 H 1.08001 * 120.00049 * 315.35137 * 6 5 4 36 36 H 1.08000 * 119.99969 * 166.81202 * 7 6 5 37 37 H 1.09000 * 110.36750 * 322.92700 * 11 10 8 38 38 H 1.09000 * 110.37308 * 85.14353 * 11 10 8 39 39 H 0.96694 * 114.00165 * 61.45910 * 14 12 11 40 40 H 1.08994 * 110.71935 * 153.86966 * 15 12 11 41 41 H 1.09005 * 110.71596 * 277.13592 * 15 12 11 42 42 H 1.09005 * 109.46598 * 61.44977 * 18 16 10 43 43 H 1.08997 * 109.47338 * 181.45234 * 18 16 10 44 44 H 1.08995 * 109.46776 * 301.45815 * 18 16 10 45 45 H 1.07997 * 120.00345 * 179.97438 * 19 5 4 46 46 H 1.08006 * 119.92039 * 179.97438 * 20 19 5 47 47 H 0.97005 * 119.99867 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 -0.0011 6 6 1.1379 4.8507 -0.0022 7 6 1.4718 5.8691 0.8190 8 6 2.4284 5.6506 1.9035 9 8 2.8275 4.5263 2.1456 10 7 2.8680 6.6938 2.6348 11 6 2.4688 8.1009 2.4509 12 6 3.6380 8.9258 3.0446 13 1 3.2982 9.9106 3.3650 14 8 4.7129 9.0369 2.1096 15 6 4.0466 8.0551 4.2621 16 6 3.8204 6.6161 3.7522 17 1 4.7643 6.1947 3.4063 18 6 3.2397 5.7497 4.8716 19 6 3.3319 3.6803 -0.0016 20 6 4.0751 2.5218 -0.0011 21 6 3.4405 1.2844 0.0057 22 8 4.1775 0.1462 0.0123 23 6 5.5097 0.2807 0.1648 24 1 5.9338 1.2514 0.3748 25 6 6.3361 -0.8275 0.0518 26 7 7.6362 -0.6963 0.2012 27 14 5.6025 -2.5067 -0.3109 28 1 5.5406 -2.7129 -1.7802 29 1 6.4509 -3.5604 0.3016 30 1 4.2326 -2.5816 0.2575 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2156 2.3144 -0.0005 35 1 0.2864 4.9443 -0.6599 36 1 1.0325 6.8452 0.6750 37 1 2.3462 8.3251 1.3912 38 1 1.5446 8.3068 2.9908 39 1 4.4751 9.4895 1.2889 40 1 5.0939 8.2162 4.5173 41 1 3.4038 8.2627 5.1177 42 1 3.0721 4.7391 4.4990 43 1 3.9396 5.7178 5.7066 44 1 2.2936 6.1749 5.2065 45 1 3.8276 4.6398 -0.0025 46 1 5.1539 2.5738 -0.0019 47 1 8.2142 -1.4712 0.1218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492051870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:14 Heat of formation + Delta-G solvation = -107.626275 kcal Electronic energy + Delta-G solvation = -30974.553129 eV Core-core repulsion = 26702.913478 eV Total energy + Delta-G solvation = -4271.639651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54078 -41.08422 -39.39598 -39.26320 -37.71037 -36.36490 -34.64514 -34.15509 -32.79604 -31.18388 -31.06687 -30.11439 -27.88938 -27.26877 -26.88877 -25.21306 -23.48589 -23.15184 -22.28716 -21.17088 -19.98569 -19.76252 -19.26499 -18.43860 -18.30783 -17.64702 -17.10879 -16.71444 -16.60853 -16.29101 -16.08864 -15.54452 -15.44633 -15.39283 -15.13787 -15.05491 -14.93165 -14.71351 -14.47299 -14.25211 -13.91933 -13.75709 -13.46891 -13.20627 -13.15055 -13.00664 -12.85790 -12.79386 -12.57214 -12.40461 -12.20531 -12.08400 -12.05837 -11.87829 -11.68002 -11.51476 -11.05888 -10.97797 -10.61012 -10.34397 -9.65261 -9.33980 -8.53756 -8.47701 -6.21545 -0.11375 0.57370 1.00851 1.25842 1.32324 1.51123 2.10827 2.27339 2.43412 2.53088 2.74475 3.02604 3.09954 3.26353 3.45817 3.64900 3.84266 3.97383 3.98348 4.06600 4.16191 4.20304 4.32304 4.34400 4.45442 4.51404 4.53117 4.56002 4.64745 4.66717 4.71714 4.72635 4.80855 4.89070 4.91191 4.96713 5.06099 5.11049 5.21664 5.25010 5.36121 5.48430 5.55392 5.56420 5.78074 5.82985 6.04317 6.61987 6.65251 6.80441 6.93200 7.37265 7.58249 8.58555 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.003113 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.695389 B = 8992.961582 C =10382.901128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.043 3.957 4 C -0.135 4.135 5 C -0.105 4.105 6 C 0.000 4.000 7 C -0.218 4.218 8 C 0.535 3.465 9 O -0.568 6.568 10 N -0.612 5.612 11 C 0.064 3.936 12 C 0.092 3.908 13 H 0.119 0.881 14 O -0.584 6.584 15 C -0.116 4.116 16 C 0.130 3.870 17 H 0.032 0.968 18 C -0.155 4.155 19 C -0.031 4.031 20 C -0.214 4.214 21 C 0.100 3.900 22 O -0.235 6.235 23 C -0.399 4.399 24 H 0.073 0.927 25 C 0.012 3.988 26 N -0.922 5.922 27 Si 0.971 3.029 28 H -0.262 1.262 29 H -0.261 1.261 30 H -0.268 1.268 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.397 0.603 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.593 24.062 3.719 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C -0.002 4.002 4 C -0.154 4.154 5 C -0.106 4.106 6 C -0.019 4.019 7 C -0.238 4.238 8 C 0.327 3.673 9 O -0.448 6.448 10 N -0.346 5.346 11 C -0.058 4.058 12 C 0.033 3.967 13 H 0.136 0.864 14 O -0.393 6.393 15 C -0.154 4.154 16 C 0.027 3.973 17 H 0.051 0.949 18 C -0.213 4.213 19 C -0.050 4.050 20 C -0.233 4.233 21 C 0.050 3.950 22 O -0.142 6.142 23 C -0.475 4.475 24 H 0.090 0.910 25 C -0.186 4.186 26 N -0.562 5.562 27 Si 0.793 3.207 28 H -0.187 1.187 29 H -0.185 1.185 30 H -0.193 1.193 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.184 0.816 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.861 22.588 4.266 29.735 hybrid contribution 0.595 -0.595 -0.302 0.894 sum -18.266 21.993 3.964 28.863 Atomic orbital electron populations 1.23303 0.76806 1.05114 1.02231 1.86119 1.23237 1.26556 1.90107 1.18161 0.88251 0.86159 1.07599 1.21193 1.00183 0.89512 1.04510 1.18710 0.92178 0.93805 1.05903 1.22624 0.95369 0.88990 0.94961 1.23109 1.02239 1.01616 0.96877 1.18896 0.81654 0.83319 0.83382 1.91007 1.59153 1.24236 1.70415 1.48563 1.44701 1.08184 1.33162 1.23421 0.99204 0.79468 1.03719 1.23112 0.85873 0.98656 0.89074 0.86384 1.86538 1.38042 1.82475 1.32224 1.22825 1.04082 0.90574 0.97925 1.21487 0.91265 0.97740 0.86851 0.94928 1.22055 1.01881 0.99346 0.97998 1.20633 0.93404 0.95518 0.95426 1.20818 0.99734 0.92113 1.10659 1.19121 0.89442 0.86668 0.99724 1.83530 1.19325 1.28665 1.82693 1.20705 0.79125 0.97896 1.49792 0.90965 1.25271 0.94684 1.02879 0.95775 1.69723 1.03574 1.33295 1.49639 0.85218 0.78722 0.77378 0.79386 1.18714 1.18540 1.19302 0.90950 0.87006 0.92002 0.81554 0.80350 0.80785 0.88188 0.87885 0.75270 0.89828 0.86393 0.95238 0.90751 0.90789 0.87475 0.87793 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.64 16 2 O -0.34 -14.86 10.28 -79.05 -0.81 -15.67 16 3 C 0.04 1.97 6.70 22.56 0.15 2.12 16 4 C -0.14 -4.78 8.77 22.65 0.20 -4.58 16 5 C -0.11 -3.63 4.43 -20.13 -0.09 -3.72 16 6 C 0.00 -0.01 9.79 23.82 0.23 0.23 16 7 C -0.22 -4.36 9.27 23.61 0.22 -4.15 16 8 C 0.53 15.59 6.63 86.33 0.57 16.16 16 9 O -0.57 -23.44 11.53 -4.43 -0.05 -23.49 16 10 N -0.61 -13.75 3.06 -793.17 -2.43 -16.18 16 11 C 0.06 0.66 6.21 86.86 0.54 1.20 16 12 C 0.09 0.92 4.43 31.99 0.14 1.07 16 13 H 0.12 0.34 8.14 -2.39 -0.02 0.33 16 14 O -0.58 -8.79 13.47 -148.98 -2.01 -10.80 16 15 C -0.12 -1.66 6.22 31.79 0.20 -1.46 16 16 C 0.13 3.15 3.46 45.34 0.16 3.30 16 17 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 18 C -0.15 -3.80 9.11 71.98 0.66 -3.15 16 19 C -0.03 -1.33 6.74 22.56 0.15 -1.18 16 20 C -0.21 -11.21 9.09 22.33 0.20 -11.00 16 21 C 0.10 5.50 6.67 22.80 0.15 5.65 16 22 O -0.23 -14.62 8.35 -6.52 -0.05 -14.68 16 23 C -0.40 -26.24 9.87 67.93 0.67 -25.57 16 24 H 0.07 5.03 5.57 -2.91 -0.02 5.01 16 25 C 0.01 0.77 5.49 84.85 0.47 1.24 16 26 N -0.92 -58.96 13.96 21.62 0.30 -58.66 16 27 Si 0.97 49.97 28.62 68.60 1.96 51.93 16 28 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 30 H -0.27 -14.25 7.11 99.48 0.71 -13.54 16 31 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 32 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 34 H 0.17 4.22 6.28 -2.91 -0.02 4.20 16 35 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.17 1.69 6.97 -2.91 -0.02 1.67 16 37 H 0.10 0.65 7.24 -2.39 -0.02 0.63 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.40 2.42 9.11 -74.06 -0.67 1.75 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.02 7.84 -2.38 -0.02 1.00 16 42 H 0.03 0.98 6.89 -2.38 -0.02 0.97 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.11 4.33 7.23 -2.91 -0.02 4.31 16 46 H 0.10 5.98 5.74 -2.91 -0.02 5.97 16 47 H 0.29 16.64 8.31 -92.70 -0.77 15.87 16 Total: -1.00 -94.84 384.84 2.98 -91.86 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.33 Total: 17.90 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 5.73 Total: -22.21 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -2.13 Total: -74.84 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -2.93 Total: -64.64 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.96 Total: 51.93 kcal Total: -94.84 2.98 -91.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.765 kcal (2) G-P(sol) polarization free energy of solvation -94.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds