Wall clock time and date at job start Wed Apr 1 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00271 * 2 1 4 4 O 1.20828 * 119.99283 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00539 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47497 * 203.59583 * 5 3 2 7 7 C 1.52997 * 109.47305 * 83.59373 * 5 3 2 8 8 N 1.46504 * 109.46983 * 323.59329 * 5 3 2 9 9 C 1.46507 * 119.99806 * 119.82059 * 8 5 3 10 10 C 1.34776 * 120.00157 * 299.82326 * 8 5 3 11 11 O 1.21718 * 120.00115 * 0.02562 * 10 8 5 12 12 C 1.46252 * 119.99926 * 179.97438 * 10 8 5 13 13 C 1.35026 * 120.00105 * 179.97438 * 12 10 8 14 14 C 1.46954 * 120.00069 * 179.72477 * 13 12 10 15 15 C 1.40023 * 120.10404 * 359.72743 * 14 13 12 16 16 C 1.37592 * 119.89936 * 179.78530 * 15 14 13 17 17 C 1.39178 * 120.10423 * 0.49365 * 16 15 14 18 18 O 1.35563 * 119.90469 * 179.76331 * 17 16 15 19 19 C 1.34781 * 117.00186 * 175.05380 * 18 17 16 20 20 H 1.07998 * 120.00133 * 5.08851 * 19 18 17 21 21 C 1.38718 * 119.99834 * 185.08898 * 19 18 17 22 22 N 1.31515 * 120.00384 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47191 * 90.00000 * 23 21 19 25 25 H 1.48499 * 109.47457 * 209.99935 * 23 21 19 26 26 H 1.48502 * 109.47081 * 330.00169 * 23 21 19 27 27 C 1.39183 * 120.19737 * 359.73608 * 17 16 15 28 28 C 1.37593 * 120.10301 * 0.02562 * 27 17 16 29 29 H 1.08991 * 109.47505 * 60.00250 * 1 2 3 30 30 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46761 * 299.99765 * 1 2 3 32 32 H 1.08998 * 109.47260 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46883 * 300.00029 * 6 5 3 34 34 H 1.09002 * 109.47266 * 59.99619 * 6 5 3 35 35 H 1.09000 * 109.47180 * 299.99952 * 7 5 3 36 36 H 1.08999 * 109.46954 * 60.00044 * 7 5 3 37 37 H 1.08998 * 109.47381 * 180.02562 * 7 5 3 38 38 H 1.09000 * 109.46901 * 274.24557 * 9 8 5 39 39 H 1.08999 * 109.47099 * 34.24875 * 9 8 5 40 40 H 1.09002 * 109.46899 * 154.24886 * 9 8 5 41 41 H 1.08006 * 120.00293 * 359.72872 * 12 10 8 42 42 H 1.08005 * 119.99580 * 359.72541 * 13 12 10 43 43 H 1.08003 * 120.05125 * 359.97438 * 15 14 13 44 44 H 1.07997 * 119.95400 * 180.22467 * 16 15 14 45 45 H 0.96995 * 119.99762 * 180.02562 * 22 21 19 46 46 H 1.07997 * 119.94465 * 180.02562 * 27 17 16 47 47 H 1.07998 * 120.05011 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0067 2.6216 0.5769 7 6 4.0835 1.1412 -1.4343 8 7 4.1125 0.1902 0.8188 9 6 5.0046 -0.8042 0.2173 10 6 3.7943 0.1070 2.1258 11 8 3.0527 0.9329 2.6254 12 6 4.3391 -0.9762 2.9436 13 6 4.0207 -1.0593 4.2531 14 6 4.5633 -2.1511 5.0734 15 6 5.4062 -3.1098 4.4979 16 6 5.9154 -4.1279 5.2709 17 6 5.5858 -4.2115 6.6205 18 8 6.0860 -5.2190 7.3772 19 6 5.8131 -5.1869 8.6967 20 1 5.1528 -4.4298 9.0933 21 6 6.3802 -6.1262 9.5453 22 7 7.1838 -7.0485 9.0624 23 14 6.0026 -6.0813 11.3742 24 1 4.8068 -6.9165 11.6534 25 1 7.1642 -6.6107 12.1328 26 1 5.7363 -4.6808 11.7904 27 6 4.7445 -3.2636 7.1957 28 6 4.2345 -2.2393 6.4317 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.0952 2.6784 0.5769 33 1 3.6003 3.4286 -0.0327 34 1 3.6382 2.7169 1.5983 35 1 3.7698 0.1818 -1.8457 36 1 3.6771 1.9483 -2.0438 37 1 5.1720 1.1978 -1.4346 38 1 4.4109 -1.5997 -0.2331 39 1 5.6152 -0.3278 -0.5496 40 1 5.6513 -1.2250 0.9873 41 1 4.9930 -1.7120 2.4991 42 1 3.3672 -0.3232 4.6977 43 1 5.6586 -3.0486 3.4496 44 1 6.5685 -4.8657 4.8288 45 1 7.5801 -7.7055 9.6558 46 1 4.4918 -3.3322 8.2435 47 1 3.5822 -1.5040 6.8790 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492900300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:22 Heat of formation + Delta-G solvation = -112.205820 kcal Electronic energy + Delta-G solvation = -29801.777641 eV Core-core repulsion = 25529.939406 eV Total energy + Delta-G solvation = -4271.838235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18399 -40.88674 -40.55675 -38.55650 -37.88417 -37.32614 -34.85668 -34.19382 -33.26961 -31.95585 -29.63090 -29.15479 -29.01921 -27.51355 -26.99420 -25.27730 -24.26060 -23.66175 -22.41829 -20.91038 -20.19132 -19.55665 -18.93659 -18.77537 -18.21886 -17.93625 -17.31916 -16.68466 -16.39333 -16.32079 -16.07625 -15.86438 -15.60633 -15.36012 -14.99955 -14.88512 -14.61571 -14.43659 -14.09310 -13.99831 -13.70512 -13.61150 -13.54644 -13.36768 -13.23147 -13.20067 -13.10875 -12.96303 -12.70584 -12.57863 -12.49617 -12.41537 -12.15264 -12.11139 -11.87966 -11.65917 -11.20753 -11.10972 -10.82471 -10.56578 -9.88150 -9.77987 -8.67392 -8.51906 -6.17733 -0.26345 0.59809 0.97364 1.12021 1.36082 1.45362 1.52862 1.62513 1.94707 2.15423 2.34868 2.86590 3.18635 3.42919 3.47970 3.54948 3.76077 3.88207 3.94087 4.08689 4.19089 4.19927 4.21645 4.28570 4.34983 4.48576 4.55265 4.58359 4.63653 4.65246 4.67384 4.72810 4.84646 4.95206 4.98391 5.02987 5.12127 5.13711 5.20710 5.28294 5.30662 5.35090 5.46153 5.59367 5.64824 5.81120 5.97956 6.11154 6.31959 6.60232 6.92648 7.13232 7.69722 8.70021 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.001843 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.279255 B =15187.488023 C =15510.375554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.536 6.536 5 C 0.184 3.816 6 C -0.151 4.151 7 C -0.150 4.150 8 N -0.599 5.599 9 C 0.059 3.941 10 C 0.550 3.450 11 O -0.587 6.587 12 C -0.244 4.244 13 C 0.017 3.983 14 C -0.170 4.170 15 C -0.034 4.034 16 C -0.205 4.205 17 C 0.130 3.870 18 O -0.218 6.218 19 C -0.416 4.416 20 H 0.105 0.895 21 C -0.018 4.018 22 N -0.912 5.912 23 Si 1.017 2.983 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.250 4.250 28 C -0.041 4.041 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.163 0.837 44 H 0.125 0.875 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 13.696 -22.119 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.425 6.425 5 C 0.097 3.903 6 C -0.209 4.209 7 C -0.206 4.206 8 N -0.332 5.332 9 C -0.082 4.082 10 C 0.343 3.657 11 O -0.470 6.470 12 C -0.264 4.264 13 C -0.002 4.002 14 C -0.171 4.171 15 C -0.052 4.052 16 C -0.224 4.224 17 C 0.078 3.922 18 O -0.123 6.123 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.217 4.217 22 N -0.549 5.549 23 Si 0.836 3.164 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.269 4.269 28 C -0.059 4.059 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.176 0.824 42 H 0.137 0.863 43 H 0.180 0.820 44 H 0.143 0.857 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.506 14.009 -21.892 26.568 hybrid contribution -0.609 -0.164 1.304 1.449 sum -6.116 13.845 -20.588 25.553 Atomic orbital electron populations 1.23477 0.75379 1.05451 1.02083 1.86508 1.24535 1.33049 1.83331 1.24669 0.93101 0.81243 0.70609 1.90619 1.67612 1.37451 1.46800 1.20471 0.83780 0.89923 0.96096 1.22111 1.03052 0.93793 1.01924 1.22239 1.04585 1.04896 0.88924 1.47861 1.48877 1.28478 1.08018 1.22370 0.93668 0.91319 1.00806 1.18684 0.79809 0.85012 0.82146 1.90781 1.39119 1.43835 1.73231 1.22816 1.07750 1.01302 0.94543 1.22164 0.92089 0.92785 0.93210 1.18745 1.05530 0.99069 0.93769 1.21276 0.93054 0.90951 0.99927 1.20431 1.07448 1.03343 0.91173 1.20202 0.91953 0.87525 0.92509 1.83882 1.66543 1.41110 1.20793 1.21876 1.30207 1.17080 0.80032 0.87808 1.26586 0.95166 0.94404 1.05537 1.70143 1.30161 1.16368 1.38256 0.84602 0.78441 0.79745 0.73573 1.18793 1.19534 1.17714 1.21187 1.05094 0.99090 1.01516 1.21291 0.96024 0.95646 0.92969 0.91093 0.85310 0.93526 0.88617 0.90265 0.93219 0.89505 0.89681 0.86741 0.90965 0.87613 0.88983 0.82394 0.86301 0.81993 0.85666 0.91586 0.85903 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -8.37 10.23 -51.43 -0.53 -8.89 16 3 C 0.46 11.55 5.42 71.23 0.39 11.93 16 4 O -0.54 -16.46 15.83 21.96 0.35 -16.11 16 5 C 0.18 3.32 1.00 2.85 0.00 3.32 16 6 C -0.15 -2.92 7.91 71.98 0.57 -2.35 16 7 C -0.15 -1.23 7.27 71.98 0.52 -0.71 16 8 N -0.60 -10.60 2.61 -808.59 -2.11 -12.71 16 9 C 0.06 0.50 9.31 127.77 1.19 1.69 16 10 C 0.55 13.85 6.96 86.33 0.60 14.45 16 11 O -0.59 -19.65 13.43 -4.41 -0.06 -19.71 16 12 C -0.24 -5.50 8.62 23.61 0.20 -5.29 16 13 C 0.02 0.46 9.45 23.82 0.23 0.69 16 14 C -0.17 -5.20 5.87 -20.13 -0.12 -5.31 16 15 C -0.03 -1.03 9.40 22.55 0.21 -0.81 16 16 C -0.20 -7.88 9.97 22.34 0.22 -7.66 16 17 C 0.13 6.10 6.66 22.72 0.15 6.25 16 18 O -0.22 -12.48 9.74 -20.19 -0.20 -12.68 16 19 C -0.42 -23.24 9.48 67.93 0.64 -22.59 16 20 H 0.10 5.32 5.18 -2.91 -0.02 5.30 16 21 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 22 N -0.91 -53.85 13.67 21.62 0.30 -53.55 16 23 Si 1.02 41.30 29.55 68.60 2.03 43.32 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 27 C -0.25 -10.39 9.15 22.34 0.20 -10.19 16 28 C -0.04 -1.40 9.78 22.55 0.22 -1.17 16 29 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.13 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.45 7.88 -2.39 -0.02 1.43 16 34 H 0.05 1.36 6.15 -2.39 -0.01 1.34 16 35 H 0.09 0.56 7.77 -2.39 -0.02 0.55 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 0.32 6.87 -2.39 -0.02 0.30 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.11 0.28 5.95 -2.39 -0.01 0.27 16 40 H 0.09 0.65 5.86 -2.39 -0.01 0.64 16 41 H 0.16 2.56 4.13 -2.91 -0.01 2.55 16 42 H 0.12 3.34 7.52 -2.91 -0.02 3.32 16 43 H 0.16 3.32 6.16 -2.91 -0.02 3.31 16 44 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 45 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.12 5.20 5.61 -2.91 -0.02 5.19 16 47 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -79.97 391.04 7.69 -72.28 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.01 Total: 24.59 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 6.90 Total: -16.55 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -1.81 Total: -66.26 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.43 Total: -57.39 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -79.97 7.69 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492900300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.926 kcal (2) G-P(sol) polarization free energy of solvation -79.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds