Wall clock time and date at job start Wed Apr 1 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35959 * 116.99909 * 2 1 4 4 C 1.38071 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83749 * 180.25484 * 4 3 2 6 6 C 1.46962 * 120.07850 * 179.71649 * 5 4 3 7 7 C 1.35027 * 119.99922 * 226.32742 * 6 5 4 8 8 C 1.46248 * 119.99950 * 10.68480 * 7 6 5 9 9 O 1.21719 * 120.00492 * 6.98627 * 8 7 6 10 10 N 1.34783 * 120.00101 * 186.99155 * 8 7 6 11 11 C 1.46500 * 120.00362 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.43369 * 32.44820 * 11 10 8 13 13 C 1.54810 * 110.48383 * 269.76582 * 11 10 8 14 14 C 1.55000 * 102.08825 * 220.43979 * 13 11 10 15 15 O 1.44375 * 103.49231 * 37.02440 * 14 13 11 16 16 C 1.43750 * 106.97473 * 319.94190 * 15 14 13 17 17 H 1.09004 * 109.99610 * 267.01460 * 16 15 14 18 18 C 1.53000 * 109.88057 * 145.93874 * 16 15 14 19 19 C 1.40032 * 119.83955 * 359.41995 * 5 4 3 20 20 C 1.37639 * 120.00119 * 0.60051 * 19 5 4 21 21 C 1.39059 * 120.16166 * 359.67567 * 20 19 5 22 22 O 1.35610 * 119.92488 * 180.02562 * 21 20 19 23 23 C 1.34768 * 116.99740 * 354.19595 * 22 21 20 24 24 H 1.07999 * 120.00093 * 5.06750 * 23 22 21 25 25 C 1.38709 * 119.99688 * 185.06972 * 23 22 21 26 26 N 1.31516 * 120.00637 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99618 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47165 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47493 * 119.99696 * 27 25 23 30 30 H 1.48505 * 109.47027 * 239.99690 * 27 25 23 31 31 H 1.09004 * 109.47245 * 300.00225 * 1 2 3 32 32 H 1.09001 * 109.46792 * 59.99798 * 1 2 3 33 33 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 34 34 H 1.08000 * 120.08383 * 359.97207 * 4 3 2 35 35 H 1.08004 * 120.00407 * 46.33102 * 6 5 4 36 36 H 1.08002 * 119.99990 * 190.67668 * 7 6 5 37 37 H 0.97005 * 119.99586 * 359.97438 * 10 8 7 38 38 H 1.08994 * 110.90697 * 338.63742 * 13 11 10 39 39 H 1.09003 * 110.90625 * 102.24940 * 13 11 10 40 40 H 1.08998 * 110.62063 * 278.52497 * 14 13 11 41 41 H 1.08999 * 110.61548 * 155.52906 * 14 13 11 42 42 H 1.09004 * 109.46689 * 302.16660 * 18 16 15 43 43 H 1.08998 * 109.47092 * 62.16056 * 18 16 15 44 44 H 1.08997 * 109.47073 * 182.16746 * 18 16 15 45 45 H 1.07997 * 119.99596 * 180.29995 * 19 5 4 46 46 H 1.07994 * 119.92498 * 179.70246 * 20 19 5 47 47 H 0.96994 * 120.00327 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3694 0.0005 5 6 1.9332 3.6148 -0.0049 6 6 1.1380 4.8506 -0.0106 7 6 1.4519 5.8515 -0.8608 8 6 2.4239 5.6250 -1.9299 9 8 2.8544 4.5049 -2.1339 10 7 2.8432 6.6567 -2.6892 11 6 3.8173 6.4299 -3.7597 12 1 3.6825 5.4390 -4.1933 13 6 5.2600 6.5985 -3.2241 14 6 5.9524 7.3524 -4.3880 15 8 4.9257 8.2468 -4.8679 16 6 3.6881 7.5158 -4.8453 17 1 3.5120 7.0511 -5.8154 18 6 2.5330 8.4589 -4.5031 19 6 3.3320 3.6803 0.0015 20 6 4.0752 2.5218 0.0006 21 6 3.4405 1.2845 0.0001 22 8 4.1775 0.1461 -0.0003 23 6 5.5128 0.2819 -0.1217 24 1 5.9570 1.2663 -0.1305 25 6 6.3167 -0.8428 -0.2352 26 7 5.7760 -2.0416 -0.2240 27 14 8.1677 -0.6547 -0.4027 28 1 8.5220 0.7873 -0.3878 29 1 8.8396 -1.3416 0.7294 30 1 8.6129 -1.2602 -1.6836 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2157 2.3144 0.0005 35 1 0.3025 4.9584 0.6652 36 1 0.9852 6.8193 -0.7515 37 1 2.5000 7.5493 -2.5268 38 1 5.2692 7.1967 -2.3130 39 1 5.7282 5.6286 -3.0558 40 1 6.2522 6.6566 -5.1716 41 1 6.8118 7.9149 -4.0234 42 1 2.7244 8.9335 -3.5406 43 1 2.4477 9.2240 -5.2748 44 1 1.6041 7.8913 -4.4499 45 1 3.8276 4.6398 0.0023 46 1 5.1539 2.5737 0.0006 47 1 6.3382 -2.8280 -0.3038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492917442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:36 Heat of formation + Delta-G solvation = -76.608686 kcal Electronic energy + Delta-G solvation = -30789.101297 eV Core-core repulsion = 26518.806670 eV Total energy + Delta-G solvation = -4270.294628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47779 -39.56946 -38.75909 -37.44315 -36.20954 -34.63359 -32.96466 -32.12330 -31.74291 -30.73258 -29.44832 -28.43607 -26.53612 -26.08356 -25.29970 -23.52057 -22.38377 -21.51975 -21.40669 -20.19601 -19.50402 -17.98035 -17.88013 -16.82523 -16.54343 -16.12456 -15.97930 -15.83334 -15.15542 -15.05505 -14.94928 -14.65983 -14.36039 -14.06422 -13.74742 -13.52464 -13.38047 -13.29033 -13.16973 -12.82856 -12.78804 -12.57756 -12.28274 -12.22904 -11.67190 -11.45472 -11.40718 -11.36755 -11.27503 -11.05011 -11.03773 -10.92231 -10.60887 -10.46752 -10.32015 -10.03673 -9.50661 -9.31356 -9.16260 -8.98385 -8.67213 -7.72761 -6.64872 -6.41874 -3.94623 1.20423 2.33133 2.63915 3.14668 3.16002 3.21398 3.23174 3.55268 3.60476 3.98417 4.12072 4.36373 4.48672 4.62855 4.73780 4.91411 4.94108 5.01159 5.07774 5.10432 5.15526 5.24236 5.27222 5.39178 5.51565 5.52654 5.57129 5.62749 5.64918 5.74264 5.77669 5.81379 5.84249 5.88923 5.91693 6.21914 6.29827 6.44795 6.50288 6.56729 6.62426 6.71997 7.03609 7.16735 7.29961 7.45049 7.62643 7.71437 7.99901 8.28390 8.51391 9.02505 9.75306 10.75348 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003453 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.112062 B = 8107.386482 C =10623.195349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.137 4.137 5 C -0.154 4.154 6 C 0.024 3.976 7 C -0.260 4.260 8 C 0.537 3.463 9 O -0.507 6.507 10 N -0.730 5.730 11 C 0.119 3.881 12 H 0.104 0.896 13 C -0.167 4.167 14 C 0.047 3.953 15 O -0.375 6.375 16 C 0.065 3.935 17 H 0.078 0.922 18 C -0.154 4.154 19 C -0.014 4.014 20 C -0.220 4.220 21 C 0.151 3.849 22 O -0.159 6.159 23 C -0.388 4.388 24 H 0.094 0.906 25 C 0.039 3.961 26 N -0.854 5.854 27 Si 0.941 3.059 28 H -0.266 1.266 29 H -0.276 1.276 30 H -0.276 1.276 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.398 0.602 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 19.492 -4.616 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.156 4.156 5 C -0.156 4.156 6 C 0.005 3.995 7 C -0.281 4.281 8 C 0.327 3.673 9 O -0.382 6.382 10 N -0.386 5.386 11 C 0.013 3.987 12 H 0.122 0.878 13 C -0.206 4.206 14 C -0.030 4.030 15 O -0.294 6.294 16 C 0.007 3.993 17 H 0.095 0.905 18 C -0.211 4.211 19 C -0.032 4.032 20 C -0.240 4.240 21 C 0.096 3.904 22 O -0.061 6.061 23 C -0.464 4.464 24 H 0.111 0.889 25 C -0.166 4.166 26 N -0.488 5.488 27 Si 0.765 3.235 28 H -0.190 1.190 29 H -0.201 1.201 30 H -0.201 1.201 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.235 0.765 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.148 0.852 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.050 18.186 -4.833 20.094 hybrid contribution 0.484 0.623 -0.034 0.790 sum -6.566 18.809 -4.866 20.508 Atomic orbital electron populations 1.22850 0.80679 1.02719 1.00079 1.86226 1.19145 1.26493 1.90059 1.17930 0.89352 0.84339 1.08727 1.20648 0.97960 0.90946 1.06041 1.18011 0.92847 0.91211 1.13485 1.22307 0.93589 0.91395 0.92223 1.22627 1.05356 1.00461 0.99667 1.18548 0.81545 0.84587 0.82621 1.91017 1.56038 1.22231 1.68930 1.46238 1.45728 1.11503 1.35112 1.22221 0.88409 1.00152 0.87958 0.87761 1.23572 0.95446 1.02339 0.99205 1.23544 0.91606 0.92729 0.95115 1.88894 1.16653 1.36908 1.86939 1.22953 0.86077 0.92206 0.98076 0.90453 1.21899 0.97102 0.99768 1.02362 1.20462 0.91901 0.96472 0.94385 1.20709 1.00259 0.90884 1.12107 1.18793 0.88233 0.87576 0.95788 1.83992 1.19498 1.25686 1.76937 1.21463 0.78676 0.94791 1.51447 0.88911 1.25321 1.00453 0.94228 0.96572 1.70058 1.36087 0.97627 1.45024 0.85652 0.80652 0.78859 0.78292 1.19039 1.20109 1.20108 0.93744 0.93761 0.89245 0.86566 0.86011 0.86104 0.76458 0.90104 0.89186 0.91764 0.88733 0.91784 0.91489 0.90631 0.88347 0.85174 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.98 10.28 -34.23 -0.35 -7.34 16 3 C 0.04 0.96 6.70 -39.13 -0.26 0.70 16 4 C -0.14 -2.63 8.77 -38.99 -0.34 -2.98 16 5 C -0.15 -2.82 4.42 -105.04 -0.46 -3.28 16 6 C 0.02 0.33 9.78 -37.19 -0.36 -0.03 16 7 C -0.26 -3.14 9.92 -37.51 -0.37 -3.51 16 8 C 0.54 7.65 6.88 -13.04 -0.09 7.56 16 9 O -0.51 -9.62 11.98 5.17 0.06 -9.56 16 10 N -0.73 -7.85 4.50 -53.77 -0.24 -8.10 16 11 C 0.12 1.31 3.38 -66.41 -0.22 1.09 16 12 H 0.10 1.37 7.55 -51.93 -0.39 0.97 16 13 C -0.17 -1.80 6.88 -24.72 -0.17 -1.97 16 14 C 0.05 0.44 7.72 38.21 0.29 0.73 16 15 O -0.37 -4.02 11.19 -35.23 -0.39 -4.41 16 16 C 0.07 0.61 4.05 -26.16 -0.11 0.50 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -1.12 8.28 37.16 0.31 -0.82 16 19 C -0.01 -0.27 6.68 -39.13 -0.26 -0.53 16 20 C -0.22 -5.11 9.14 -39.50 -0.36 -5.47 16 21 C 0.15 3.93 6.67 -38.76 -0.26 3.67 16 22 O -0.16 -4.78 9.52 -13.96 -0.13 -4.92 16 23 C -0.39 -11.19 9.48 30.91 0.29 -10.90 16 24 H 0.09 2.48 5.19 -52.49 -0.27 2.21 16 25 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 26 N -0.85 -25.68 13.67 55.48 0.76 -24.92 16 27 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 28 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 31 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 35 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.40 3.23 5.91 -40.82 -0.24 2.98 16 38 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.43 6.81 -51.93 -0.35 0.08 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.50 7.85 -51.93 -0.41 0.10 16 45 H 0.10 1.80 7.28 -52.49 -0.38 1.41 16 46 H 0.13 3.01 5.62 -52.49 -0.29 2.71 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -35.68 385.20 -7.41 -43.08 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.40 Total: 7.19 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.48 Total: -12.72 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.52 Total: -33.01 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.82 Total: -26.22 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.68 -7.41 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492917442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.526 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds