Wall clock time and date at job start Wed Apr 1 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35959 * 116.99909 * 2 1 4 4 C 1.38071 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83749 * 180.25484 * 4 3 2 6 6 C 1.46962 * 120.07850 * 179.71649 * 5 4 3 7 7 C 1.35027 * 119.99922 * 226.32742 * 6 5 4 8 8 C 1.46248 * 119.99950 * 10.68480 * 7 6 5 9 9 O 1.21719 * 120.00492 * 6.98627 * 8 7 6 10 10 N 1.34783 * 120.00101 * 186.99155 * 8 7 6 11 11 C 1.46500 * 120.00362 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.43369 * 32.44820 * 11 10 8 13 13 C 1.54810 * 110.48383 * 269.76582 * 11 10 8 14 14 C 1.55000 * 102.08825 * 220.43979 * 13 11 10 15 15 O 1.44375 * 103.49231 * 37.02440 * 14 13 11 16 16 C 1.43750 * 106.97473 * 319.94190 * 15 14 13 17 17 H 1.09004 * 109.99610 * 267.01460 * 16 15 14 18 18 C 1.53000 * 109.88057 * 145.93874 * 16 15 14 19 19 C 1.40032 * 119.83955 * 359.41995 * 5 4 3 20 20 C 1.37639 * 120.00119 * 0.60051 * 19 5 4 21 21 C 1.39059 * 120.16166 * 359.67567 * 20 19 5 22 22 O 1.35610 * 119.92488 * 180.02562 * 21 20 19 23 23 C 1.34768 * 116.99740 * 354.19595 * 22 21 20 24 24 H 1.07999 * 120.00093 * 5.06750 * 23 22 21 25 25 C 1.38709 * 119.99688 * 185.06972 * 23 22 21 26 26 N 1.31516 * 120.00637 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99618 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47165 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47493 * 119.99696 * 27 25 23 30 30 H 1.48505 * 109.47027 * 239.99690 * 27 25 23 31 31 H 1.09004 * 109.47245 * 300.00225 * 1 2 3 32 32 H 1.09001 * 109.46792 * 59.99798 * 1 2 3 33 33 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 34 34 H 1.08000 * 120.08383 * 359.97207 * 4 3 2 35 35 H 1.08004 * 120.00407 * 46.33102 * 6 5 4 36 36 H 1.08002 * 119.99990 * 190.67668 * 7 6 5 37 37 H 0.97005 * 119.99586 * 359.97438 * 10 8 7 38 38 H 1.08994 * 110.90697 * 338.63742 * 13 11 10 39 39 H 1.09003 * 110.90625 * 102.24940 * 13 11 10 40 40 H 1.08998 * 110.62063 * 278.52497 * 14 13 11 41 41 H 1.08999 * 110.61548 * 155.52906 * 14 13 11 42 42 H 1.09004 * 109.46689 * 302.16660 * 18 16 15 43 43 H 1.08998 * 109.47092 * 62.16056 * 18 16 15 44 44 H 1.08997 * 109.47073 * 182.16746 * 18 16 15 45 45 H 1.07997 * 119.99596 * 180.29995 * 19 5 4 46 46 H 1.07994 * 119.92498 * 179.70246 * 20 19 5 47 47 H 0.96994 * 120.00327 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3694 0.0005 5 6 1.9332 3.6148 -0.0049 6 6 1.1380 4.8506 -0.0106 7 6 1.4519 5.8515 -0.8608 8 6 2.4239 5.6250 -1.9299 9 8 2.8544 4.5049 -2.1339 10 7 2.8432 6.6567 -2.6892 11 6 3.8173 6.4299 -3.7597 12 1 3.6825 5.4390 -4.1933 13 6 5.2600 6.5985 -3.2241 14 6 5.9524 7.3524 -4.3880 15 8 4.9257 8.2468 -4.8679 16 6 3.6881 7.5158 -4.8453 17 1 3.5120 7.0511 -5.8154 18 6 2.5330 8.4589 -4.5031 19 6 3.3320 3.6803 0.0015 20 6 4.0752 2.5218 0.0006 21 6 3.4405 1.2845 0.0001 22 8 4.1775 0.1461 -0.0003 23 6 5.5128 0.2819 -0.1217 24 1 5.9570 1.2663 -0.1305 25 6 6.3167 -0.8428 -0.2352 26 7 5.7760 -2.0416 -0.2240 27 14 8.1677 -0.6547 -0.4027 28 1 8.5220 0.7873 -0.3878 29 1 8.8396 -1.3416 0.7294 30 1 8.6129 -1.2602 -1.6836 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2157 2.3144 0.0005 35 1 0.3025 4.9584 0.6652 36 1 0.9852 6.8193 -0.7515 37 1 2.5000 7.5493 -2.5268 38 1 5.2692 7.1967 -2.3130 39 1 5.7282 5.6286 -3.0558 40 1 6.2522 6.6566 -5.1716 41 1 6.8118 7.9149 -4.0234 42 1 2.7244 8.9335 -3.5406 43 1 2.4477 9.2240 -5.2748 44 1 1.6041 7.8913 -4.4499 45 1 3.8276 4.6398 0.0023 46 1 5.1539 2.5737 0.0006 47 1 6.3382 -2.8280 -0.3038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492917442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:35 Heat of formation + Delta-G solvation = -102.503468 kcal Electronic energy + Delta-G solvation = -30790.224179 eV Core-core repulsion = 26518.806670 eV Total energy + Delta-G solvation = -4271.417510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53258 -41.09991 -39.92076 -39.22427 -37.74471 -35.70752 -34.53499 -33.87363 -32.48845 -31.73348 -31.10301 -29.90413 -27.84749 -27.37335 -26.88026 -24.75758 -23.20868 -23.18927 -22.82266 -21.13316 -20.69017 -19.86901 -19.40893 -18.24333 -17.74327 -17.23765 -17.11459 -16.75040 -16.66089 -16.59499 -16.36607 -15.94674 -15.68644 -15.50822 -15.21640 -15.06314 -14.97996 -14.61891 -14.14580 -13.93726 -13.84264 -13.54454 -13.49988 -13.38338 -13.17835 -13.03189 -12.80605 -12.70661 -12.56016 -12.21698 -12.15618 -12.06724 -12.00161 -11.88655 -11.81840 -11.34610 -10.90591 -10.83490 -10.62608 -10.28941 -10.00959 -9.35777 -8.46534 -8.36051 -6.10104 -0.02265 0.65254 1.07725 1.31444 1.42315 1.50881 2.16718 2.27432 2.45754 2.62386 2.80992 2.85571 3.16486 3.47413 3.54713 3.68179 3.89140 3.96646 4.03503 4.09161 4.14681 4.18939 4.25825 4.34797 4.35181 4.43940 4.55005 4.58600 4.62985 4.68382 4.70998 4.76869 4.80902 4.89257 4.98021 4.98563 5.01141 5.10420 5.15192 5.22392 5.37856 5.50875 5.55594 5.59827 5.81351 5.84596 5.97258 6.07957 6.67563 6.69888 6.97697 7.44180 7.82423 8.77665 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003453 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.112062 B = 8107.386482 C =10623.195349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.029 3.971 4 C -0.137 4.137 5 C -0.117 4.117 6 C 0.000 4.000 7 C -0.221 4.221 8 C 0.525 3.475 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.116 3.884 12 H 0.077 0.923 13 C -0.166 4.166 14 C 0.050 3.950 15 O -0.385 6.385 16 C 0.067 3.933 17 H 0.080 0.920 18 C -0.152 4.152 19 C -0.024 4.024 20 C -0.222 4.222 21 C 0.094 3.906 22 O -0.221 6.221 23 C -0.413 4.413 24 H 0.097 0.903 25 C -0.024 4.024 26 N -0.918 5.918 27 Si 1.019 2.981 28 H -0.253 1.253 29 H -0.264 1.264 30 H -0.268 1.268 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 24.601 -4.712 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.264 6.264 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.118 4.118 6 C -0.019 4.019 7 C -0.242 4.242 8 C 0.315 3.685 9 O -0.443 6.443 10 N -0.364 5.364 11 C 0.009 3.991 12 H 0.095 0.905 13 C -0.205 4.205 14 C -0.027 4.027 15 O -0.304 6.304 16 C 0.009 3.991 17 H 0.098 0.902 18 C -0.209 4.209 19 C -0.042 4.042 20 C -0.241 4.241 21 C 0.043 3.957 22 O -0.128 6.128 23 C -0.489 4.489 24 H 0.115 0.885 25 C -0.221 4.221 26 N -0.557 5.557 27 Si 0.838 3.162 28 H -0.176 1.176 29 H -0.189 1.189 30 H -0.192 1.192 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.194 0.806 37 H 0.257 0.743 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.488 23.418 -4.934 25.745 hybrid contribution 0.838 -0.491 -0.118 0.978 sum -8.650 22.928 -5.052 25.021 Atomic orbital electron populations 1.23238 0.77230 1.04764 1.01980 1.86168 1.22917 1.27103 1.90204 1.18314 0.88888 0.85898 1.08507 1.21133 0.99835 0.89828 1.04773 1.18668 0.92631 0.93349 1.07139 1.22571 0.95130 0.89097 0.95097 1.23108 1.02281 1.01908 0.96860 1.19184 0.81698 0.84277 0.83334 1.91034 1.58179 1.24626 1.70413 1.46073 1.44647 1.11748 1.33916 1.22178 0.88636 0.99669 0.88590 0.90460 1.23511 0.95434 1.01505 1.00036 1.23594 0.91770 0.92764 0.94568 1.88886 1.17196 1.37305 1.87026 1.23011 0.86566 0.92135 0.97426 0.90226 1.21913 0.96252 0.99541 1.03174 1.20650 0.93057 0.95772 0.94762 1.20794 1.00014 0.91547 1.11758 1.19441 0.89801 0.87692 0.98773 1.83956 1.19902 1.27745 1.81168 1.21883 0.79292 0.95437 1.52312 0.88546 1.26628 1.06048 0.93496 0.95957 1.70209 1.38245 0.98658 1.48543 0.84535 0.73411 0.79526 0.78696 1.17609 1.18866 1.19249 0.91185 0.92101 0.87468 0.82392 0.81042 0.80551 0.74310 0.89731 0.91321 0.91473 0.87100 0.90752 0.90740 0.89690 0.86558 0.86623 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.66 10.28 -79.11 -0.81 -17.47 16 3 C 0.03 1.38 6.70 22.56 0.15 1.53 16 4 C -0.14 -5.04 8.77 22.65 0.20 -4.84 16 5 C -0.12 -3.96 4.42 -20.13 -0.09 -4.05 16 6 C 0.00 0.01 9.78 23.82 0.23 0.24 16 7 C -0.22 -3.93 9.92 23.61 0.23 -3.69 16 8 C 0.52 13.11 6.88 86.32 0.59 13.70 16 9 O -0.56 -20.80 11.98 -4.41 -0.05 -20.85 16 10 N -0.71 -12.78 4.50 -442.23 -1.99 -14.77 16 11 C 0.12 2.39 3.38 45.98 0.16 2.55 16 12 H 0.08 2.06 7.55 -2.39 -0.02 2.04 16 13 C -0.17 -3.45 6.88 31.90 0.22 -3.23 16 14 C 0.05 0.86 7.72 72.67 0.56 1.42 16 15 O -0.38 -7.36 11.19 -148.98 -1.67 -9.03 16 16 C 0.07 1.10 4.05 30.96 0.13 1.22 16 17 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 18 C -0.15 -1.63 8.28 71.98 0.60 -1.03 16 19 C -0.02 -0.95 6.68 22.56 0.15 -0.80 16 20 C -0.22 -10.93 9.14 22.33 0.20 -10.73 16 21 C 0.09 5.24 6.67 22.80 0.15 5.39 16 22 O -0.22 -14.65 9.52 -6.59 -0.06 -14.71 16 23 C -0.41 -26.04 9.48 67.93 0.64 -25.40 16 24 H 0.10 5.65 5.19 -2.91 -0.02 5.64 16 25 C -0.02 -1.45 5.49 84.85 0.47 -0.99 16 26 N -0.92 -59.77 13.67 21.62 0.30 -59.47 16 27 Si 1.02 45.52 29.55 68.60 2.03 47.55 16 28 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 29 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 30 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 31 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 32 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.16 4.38 6.28 -2.91 -0.02 4.37 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.42 4.61 5.91 -92.70 -0.55 4.06 16 38 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 0.65 6.81 -2.39 -0.02 0.63 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.76 7.85 -2.39 -0.02 0.75 16 45 H 0.12 4.10 7.28 -2.91 -0.02 4.08 16 46 H 0.12 5.84 5.62 -2.91 -0.02 5.82 16 47 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -90.18 385.20 3.91 -86.27 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.46 Total: 29.38 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 5.71 Total: -26.90 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.69 Total: -74.24 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -2.60 Total: -62.06 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -90.18 3.91 -86.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492917442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.234 kcal (2) G-P(sol) polarization free energy of solvation -90.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds