Wall clock time and date at job start Wed Apr 1 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 H 1.08999 * 109.47503 * 54.99342 * 3 2 1 5 5 C 1.53009 * 109.46588 * 295.00024 * 3 2 1 6 6 C 1.53001 * 109.47250 * 175.00298 * 3 2 1 7 7 H 1.09002 * 109.47003 * 304.99331 * 6 3 2 8 8 N 1.46505 * 109.46706 * 184.99631 * 6 3 2 9 9 C 1.34774 * 119.99533 * 155.00055 * 8 6 3 10 10 O 1.21725 * 120.00224 * 359.72366 * 9 8 6 11 11 C 1.46255 * 120.00179 * 179.72083 * 9 8 6 12 12 C 1.35017 * 120.00354 * 173.20902 * 11 9 8 13 13 C 1.46962 * 119.99982 * 348.68471 * 12 11 9 14 14 C 1.40019 * 120.10201 * 316.40804 * 13 12 11 15 15 C 1.37607 * 119.89741 * 179.69288 * 14 13 12 16 16 C 1.39175 * 120.09777 * 0.60239 * 15 14 13 17 17 O 1.35569 * 119.90046 * 179.69736 * 16 15 14 18 18 C 1.34774 * 117.00755 * 174.33551 * 17 16 15 19 19 H 1.08006 * 119.99755 * 5.05688 * 18 17 16 20 20 C 1.38717 * 120.00950 * 185.06102 * 18 17 16 21 21 N 1.31515 * 119.99413 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00636 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46954 * 59.99863 * 22 20 18 24 24 H 1.48500 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46945 * 300.00114 * 22 20 18 26 26 C 1.39183 * 120.20598 * 359.66971 * 16 15 14 27 27 C 1.37594 * 120.09629 * 0.02706 * 26 16 15 28 28 C 1.50703 * 109.47085 * 64.99810 * 6 3 2 29 29 O 1.20822 * 119.99915 * 120.00161 * 28 6 3 30 30 O 1.34228 * 119.99695 * 299.99314 * 28 6 3 31 31 H 1.09002 * 109.46918 * 300.00334 * 1 2 3 32 32 H 1.09000 * 109.47250 * 60.00267 * 1 2 3 33 33 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46918 * 239.99666 * 2 1 3 35 35 H 1.09000 * 109.47250 * 119.99733 * 2 1 3 36 36 H 1.09002 * 109.46737 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47078 * 299.99535 * 5 3 2 38 38 H 1.08993 * 109.47234 * 59.99987 * 5 3 2 39 39 H 0.96994 * 120.00192 * 334.72317 * 8 6 3 40 40 H 1.08005 * 119.99637 * 353.21909 * 11 9 8 41 41 H 1.08001 * 120.00198 * 168.68459 * 12 11 9 42 42 H 1.08001 * 120.05244 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.94983 * 180.27367 * 15 14 13 44 44 H 0.96992 * 120.00016 * 180.02562 * 21 20 18 45 45 H 1.07994 * 119.94904 * 180.02562 * 26 16 15 46 46 H 1.08003 * 120.04588 * 180.02562 * 27 26 16 47 47 H 0.96703 * 116.99576 * 179.97438 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5649 1.4443 0.1256 7 1 3.8571 0.8800 1.0113 8 7 4.0432 2.8238 0.2456 9 6 5.2190 3.0788 0.8531 10 8 5.8809 2.1634 1.3065 11 6 5.6996 4.4554 0.9676 12 6 6.8054 4.7263 1.6934 13 6 7.3824 3.6944 2.5663 14 6 6.5483 2.9079 3.3703 15 6 7.0926 1.9386 4.1814 16 6 8.4708 1.7479 4.2127 17 8 9.0032 0.7959 5.0178 18 6 10.3298 0.5806 4.9165 19 1 10.9317 1.2095 4.2772 20 6 10.9222 -0.4489 5.6330 21 7 10.1892 -1.2152 6.4109 22 14 12.7610 -0.7469 5.4930 23 1 13.4941 0.4663 5.9355 24 1 13.1427 -1.8972 6.3512 25 1 13.1076 -1.0471 4.0807 26 6 9.3043 2.5311 3.4195 27 6 8.7684 3.4984 2.6008 28 6 4.1705 0.8072 -1.0985 29 8 4.9245 1.4404 -1.7987 30 8 3.8724 -0.4638 -1.4107 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9989 3.1540 -1.3077 37 1 2.0698 1.5874 -2.1492 38 1 0.5489 2.1251 -1.3970 39 1 3.5158 3.5532 -0.1157 40 1 5.1698 5.2552 0.4715 41 1 7.2659 5.7013 1.6325 42 1 5.4791 3.0588 3.3505 43 1 6.4497 1.3286 4.7985 44 1 10.6034 -1.9348 6.9122 45 1 10.3732 2.3792 3.4467 46 1 9.4159 4.1054 1.9853 47 1 4.2850 -0.8289 -2.2054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493226352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:32 Heat of formation + Delta-G solvation = -107.927401 kcal Electronic energy + Delta-G solvation = -30449.838447 eV Core-core repulsion = 26178.185738 eV Total energy + Delta-G solvation = -4271.652709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97443 -39.51733 -38.67447 -37.31218 -36.45551 -36.13243 -33.88483 -33.05463 -32.12236 -30.30874 -30.11094 -28.44450 -27.55140 -25.43191 -24.46509 -23.54085 -22.06987 -21.68953 -20.83371 -20.23874 -19.33889 -18.12386 -17.93616 -17.39449 -16.85203 -16.70240 -16.04128 -15.81831 -15.10553 -14.72783 -14.58739 -14.37536 -14.31295 -14.21720 -13.78612 -13.56655 -13.44256 -13.34192 -13.16485 -12.97513 -12.55764 -12.46233 -12.24159 -12.17250 -12.07337 -11.70713 -11.68190 -11.39883 -11.20860 -11.04403 -10.96877 -10.82752 -10.70101 -10.68205 -10.63733 -10.41037 -9.57444 -9.42660 -9.23479 -9.13824 -8.68710 -7.92084 -6.85845 -6.44762 -4.00455 1.23213 2.12979 2.43274 2.61033 2.74840 3.14403 3.17183 3.18529 3.27974 3.67660 3.98286 4.20779 4.47694 4.53449 4.70536 4.91693 4.98423 5.02493 5.11277 5.11856 5.23620 5.24913 5.29290 5.36342 5.36508 5.53238 5.59902 5.62961 5.64684 5.75278 5.79930 5.85288 5.99312 6.12867 6.25320 6.28055 6.32520 6.38541 6.45560 6.59924 6.79378 7.04413 7.13214 7.36433 7.45057 7.51439 7.54918 7.79345 7.93177 8.01946 8.45085 9.00841 9.72656 10.73036 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002545 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.123268 B =10998.323587 C =11932.798801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.156 4.156 6 C 0.162 3.838 7 H 0.128 0.872 8 N -0.717 5.717 9 C 0.547 3.453 10 O -0.506 6.506 11 C -0.265 4.265 12 C 0.031 3.969 13 C -0.191 4.191 14 C 0.011 3.989 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.172 6.172 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.250 4.250 27 C -0.040 4.040 28 C 0.469 3.531 29 O -0.505 6.505 30 O -0.512 6.512 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.271 0.729 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 7.710 -14.580 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.111 4.111 4 H 0.113 0.887 5 C -0.213 4.213 6 C 0.054 3.946 7 H 0.145 0.855 8 N -0.371 5.371 9 C 0.338 3.662 10 O -0.382 6.382 11 C -0.286 4.286 12 C 0.011 3.989 13 C -0.192 4.192 14 C -0.007 4.007 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.074 6.074 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.270 4.270 27 C -0.059 4.059 28 C 0.309 3.691 29 O -0.392 6.392 30 O -0.324 6.324 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.143 0.857 46 H 0.124 0.876 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -17.893 7.011 -13.736 23.622 hybrid contribution 1.040 -0.014 -1.071 1.493 sum -16.853 6.997 -14.806 23.499 Atomic orbital electron populations 1.21802 0.95487 1.01847 1.01729 1.21716 0.95943 0.94583 1.04253 1.21419 0.90881 0.98851 0.99959 0.88725 1.21996 1.02400 1.00388 0.96499 1.20474 0.94101 0.84948 0.95076 0.85472 1.45779 1.23473 1.06445 1.61424 1.18554 0.79860 0.90622 0.77198 1.91007 1.54221 1.46720 1.46230 1.22489 1.02689 0.94682 1.08741 1.22346 0.91074 0.97133 0.88316 1.18298 0.93312 1.03141 1.04427 1.20438 0.96886 0.91615 0.91805 1.20001 0.92263 1.03555 1.06398 1.19529 0.92299 0.88264 0.88267 1.83900 1.25146 1.47261 1.51138 1.21349 0.80330 1.16096 1.28854 0.88953 1.25321 1.00548 0.94916 0.95741 1.70014 1.36214 1.17557 1.25676 0.85770 0.80466 0.78424 0.78731 1.19434 1.20243 1.19457 1.20955 1.00277 1.01734 1.04009 1.20751 0.93225 0.96122 0.95791 1.24095 0.78587 0.79642 0.86750 1.90719 1.33787 1.63598 1.51085 1.84598 1.68979 1.29549 1.49278 0.92742 0.92649 0.92518 0.89657 0.91148 0.92402 0.92674 0.91173 0.76323 0.85997 0.85931 0.88056 0.86810 0.91905 0.85654 0.87597 0.73655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.13 -0.91 4.88 -26.73 -0.13 -1.04 16 3 C -0.09 -0.67 2.32 -90.62 -0.21 -0.88 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.16 -0.99 8.50 37.16 0.32 -0.68 16 6 C 0.16 1.77 2.29 -69.08 -0.16 1.61 16 7 H 0.13 1.60 7.57 -51.93 -0.39 1.21 16 8 N -0.72 -8.10 4.54 -56.37 -0.26 -8.35 16 9 C 0.55 8.28 6.60 -13.04 -0.09 8.19 16 10 O -0.51 -10.00 11.84 5.17 0.06 -9.94 16 11 C -0.26 -3.44 9.90 -37.51 -0.37 -3.82 16 12 C 0.03 0.44 9.80 -37.19 -0.36 0.08 16 13 C -0.19 -3.58 4.54 -105.03 -0.48 -4.05 16 14 C 0.01 0.22 6.59 -39.14 -0.26 -0.04 16 15 C -0.20 -4.66 9.97 -39.46 -0.39 -5.06 16 16 C 0.17 4.39 6.66 -38.88 -0.26 4.14 16 17 O -0.17 -5.09 9.74 0.76 0.01 -5.09 16 18 C -0.39 -11.22 9.48 30.91 0.29 -10.92 16 19 H 0.09 2.46 5.18 -52.48 -0.27 2.19 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.25 -5.81 9.14 -39.47 -0.36 -6.17 16 27 C -0.04 -0.80 9.78 -39.15 -0.38 -1.19 16 28 C 0.47 5.85 6.13 36.01 0.22 6.07 16 29 O -0.51 -8.06 17.08 -18.75 -0.32 -8.38 16 30 O -0.51 -4.84 10.65 -39.25 -0.42 -5.26 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.29 6.56 -51.93 -0.34 -0.05 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.65 5.77 -51.93 -0.30 0.35 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.34 6.77 -51.93 -0.35 -0.01 16 37 H 0.05 0.42 7.07 -51.93 -0.37 0.05 16 38 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 39 H 0.40 3.32 7.15 -40.82 -0.29 3.02 16 40 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.10 1.80 7.02 -52.49 -0.37 1.43 16 43 H 0.11 2.53 8.06 -52.49 -0.42 2.11 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.13 2.87 5.62 -52.49 -0.29 2.58 16 46 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 47 H 0.40 2.38 9.10 45.56 0.41 2.80 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -36.86 387.67 -7.13 -44.00 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.42 Total: 9.43 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.36 Total: -13.27 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.50 Total: -33.22 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.67 Total: -28.67 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.86 -7.13 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.932 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds