Wall clock time and date at job start Wed Apr 1 2020 04:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 H 1.08999 * 109.47503 * 54.99342 * 3 2 1 5 5 C 1.53009 * 109.46588 * 295.00024 * 3 2 1 6 6 C 1.53001 * 109.47250 * 175.00298 * 3 2 1 7 7 H 1.09002 * 109.47003 * 304.99331 * 6 3 2 8 8 N 1.46505 * 109.46706 * 184.99631 * 6 3 2 9 9 C 1.34774 * 119.99533 * 155.00055 * 8 6 3 10 10 O 1.21725 * 120.00224 * 359.72366 * 9 8 6 11 11 C 1.46255 * 120.00179 * 179.72083 * 9 8 6 12 12 C 1.35017 * 120.00354 * 173.20902 * 11 9 8 13 13 C 1.46962 * 119.99982 * 348.68471 * 12 11 9 14 14 C 1.40019 * 120.10201 * 316.40804 * 13 12 11 15 15 C 1.37607 * 119.89741 * 179.69288 * 14 13 12 16 16 C 1.39175 * 120.09777 * 0.60239 * 15 14 13 17 17 O 1.35569 * 119.90046 * 179.69736 * 16 15 14 18 18 C 1.34774 * 117.00755 * 174.33551 * 17 16 15 19 19 H 1.08006 * 119.99755 * 5.05688 * 18 17 16 20 20 C 1.38717 * 120.00950 * 185.06102 * 18 17 16 21 21 N 1.31515 * 119.99413 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00636 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46954 * 59.99863 * 22 20 18 24 24 H 1.48500 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46945 * 300.00114 * 22 20 18 26 26 C 1.39183 * 120.20598 * 359.66971 * 16 15 14 27 27 C 1.37594 * 120.09629 * 0.02706 * 26 16 15 28 28 C 1.50703 * 109.47085 * 64.99810 * 6 3 2 29 29 O 1.20822 * 119.99915 * 120.00161 * 28 6 3 30 30 O 1.34228 * 119.99695 * 299.99314 * 28 6 3 31 31 H 1.09002 * 109.46918 * 300.00334 * 1 2 3 32 32 H 1.09000 * 109.47250 * 60.00267 * 1 2 3 33 33 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46918 * 239.99666 * 2 1 3 35 35 H 1.09000 * 109.47250 * 119.99733 * 2 1 3 36 36 H 1.09002 * 109.46737 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47078 * 299.99535 * 5 3 2 38 38 H 1.08993 * 109.47234 * 59.99987 * 5 3 2 39 39 H 0.96994 * 120.00192 * 334.72317 * 8 6 3 40 40 H 1.08005 * 119.99637 * 353.21909 * 11 9 8 41 41 H 1.08001 * 120.00198 * 168.68459 * 12 11 9 42 42 H 1.08001 * 120.05244 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.94983 * 180.27367 * 15 14 13 44 44 H 0.96992 * 120.00016 * 180.02562 * 21 20 18 45 45 H 1.07994 * 119.94904 * 180.02562 * 26 16 15 46 46 H 1.08003 * 120.04588 * 180.02562 * 27 26 16 47 47 H 0.96703 * 116.99576 * 179.97438 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5649 1.4443 0.1256 7 1 3.8571 0.8800 1.0113 8 7 4.0432 2.8238 0.2456 9 6 5.2190 3.0788 0.8531 10 8 5.8809 2.1634 1.3065 11 6 5.6996 4.4554 0.9676 12 6 6.8054 4.7263 1.6934 13 6 7.3824 3.6944 2.5663 14 6 6.5483 2.9079 3.3703 15 6 7.0926 1.9386 4.1814 16 6 8.4708 1.7479 4.2127 17 8 9.0032 0.7959 5.0178 18 6 10.3298 0.5806 4.9165 19 1 10.9317 1.2095 4.2772 20 6 10.9222 -0.4489 5.6330 21 7 10.1892 -1.2152 6.4109 22 14 12.7610 -0.7469 5.4930 23 1 13.4941 0.4663 5.9355 24 1 13.1427 -1.8972 6.3512 25 1 13.1076 -1.0471 4.0807 26 6 9.3043 2.5311 3.4195 27 6 8.7684 3.4984 2.6008 28 6 4.1705 0.8072 -1.0985 29 8 4.9245 1.4404 -1.7987 30 8 3.8724 -0.4638 -1.4107 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9989 3.1540 -1.3077 37 1 2.0698 1.5874 -2.1492 38 1 0.5489 2.1251 -1.3970 39 1 3.5158 3.5532 -0.1157 40 1 5.1698 5.2552 0.4715 41 1 7.2659 5.7013 1.6325 42 1 5.4791 3.0588 3.3505 43 1 6.4497 1.3286 4.7985 44 1 10.6034 -1.9348 6.9122 45 1 10.3732 2.3792 3.4467 46 1 9.4159 4.1054 1.9853 47 1 4.2850 -0.8289 -2.2054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493226352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:30 Heat of formation + Delta-G solvation = -134.078078 kcal Electronic energy + Delta-G solvation = -30450.972425 eV Core-core repulsion = 26178.185738 eV Total energy + Delta-G solvation = -4272.786687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.96821 -40.93760 -40.25503 -38.42383 -37.77340 -37.19337 -34.87488 -34.61144 -33.92847 -31.82739 -31.08958 -29.64538 -28.62059 -27.40747 -25.18470 -24.73106 -23.58862 -23.06518 -22.06970 -21.10752 -20.49864 -19.79390 -19.08643 -18.92998 -18.24724 -17.82010 -17.05891 -16.81180 -16.37240 -16.33011 -15.87105 -15.80111 -15.56088 -15.47503 -15.06900 -14.86088 -14.64380 -14.49507 -14.43729 -14.13145 -14.03122 -13.76815 -13.56908 -13.06736 -12.96385 -12.85379 -12.76119 -12.63885 -12.52846 -12.37937 -12.25112 -12.13919 -11.93339 -11.75571 -11.57894 -11.39263 -11.25209 -10.99340 -10.75873 -10.43381 -10.25685 -9.59866 -8.57212 -8.49143 -6.16407 -0.03814 0.71108 1.09215 1.14495 1.32382 1.45574 1.49427 1.76130 2.16448 2.32032 2.55631 2.86248 3.19981 3.49136 3.52168 3.79979 3.91028 4.00094 4.06064 4.14005 4.16532 4.18696 4.35119 4.51965 4.54781 4.58633 4.60495 4.72087 4.76052 4.77949 5.01635 5.04390 5.08166 5.09378 5.12956 5.24037 5.24656 5.29277 5.31141 5.44051 5.48108 5.54534 5.57504 5.66906 5.71889 5.82962 6.01666 6.24174 6.56628 6.91034 6.94613 7.32790 7.76535 8.73775 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002545 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.123268 B =10998.323587 C =11932.798801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.081 4.081 4 H 0.111 0.889 5 C -0.154 4.154 6 C 0.157 3.843 7 H 0.107 0.893 8 N -0.698 5.698 9 C 0.533 3.467 10 O -0.562 6.562 11 C -0.232 4.232 12 C 0.009 3.991 13 C -0.163 4.163 14 C 0.015 3.985 15 C -0.220 4.220 16 C 0.127 3.873 17 O -0.230 6.230 18 C -0.417 4.417 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.021 2.979 23 H -0.254 1.254 24 H -0.269 1.269 25 H -0.260 1.260 26 C -0.260 4.260 27 C -0.049 4.049 28 C 0.471 3.529 29 O -0.544 6.544 30 O -0.505 6.505 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.420 0.580 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.274 0.726 45 H 0.119 0.881 46 H 0.145 0.855 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 11.035 -17.567 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.100 4.100 4 H 0.129 0.871 5 C -0.211 4.211 6 C 0.049 3.951 7 H 0.124 0.876 8 N -0.352 5.352 9 C 0.324 3.676 10 O -0.442 6.442 11 C -0.252 4.252 12 C -0.010 4.010 13 C -0.164 4.164 14 C -0.003 4.003 15 C -0.239 4.239 16 C 0.076 3.924 17 O -0.136 6.136 18 C -0.493 4.493 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.178 1.178 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.280 4.280 27 C -0.067 4.067 28 C 0.313 3.687 29 O -0.434 6.434 30 O -0.317 6.317 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.259 0.741 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.137 0.863 46 H 0.163 0.837 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.678 10.387 -16.789 27.875 hybrid contribution 1.140 -0.842 -0.491 1.500 sum -18.538 9.545 -17.280 27.081 Atomic orbital electron populations 1.21777 0.94071 1.02168 1.02495 1.21711 0.97119 0.94394 1.03369 1.21418 0.87923 0.99295 1.01358 0.87109 1.22002 1.03593 1.00431 0.95039 1.20636 0.96447 0.84395 0.93607 0.87568 1.45614 1.22388 1.07342 1.59839 1.19192 0.80298 0.91248 0.76814 1.91011 1.56070 1.48478 1.48627 1.22998 1.00973 0.94501 1.06740 1.22599 0.91936 0.97737 0.88724 1.18890 0.92839 1.02041 1.02602 1.20704 0.98202 0.90655 0.90765 1.20202 0.91494 1.04887 1.07334 1.20027 0.93656 0.88948 0.89756 1.83868 1.25642 1.50016 1.54050 1.21835 0.80744 1.17011 1.29686 0.88171 1.26655 1.06203 0.94181 0.94997 1.70165 1.38753 1.19019 1.27856 0.84633 0.73374 0.78919 0.79168 1.17799 1.19304 1.18451 1.21088 0.99886 1.02475 1.04515 1.21180 0.94593 0.95525 0.95433 1.24355 0.77685 0.80041 0.86604 1.90698 1.35540 1.64615 1.52578 1.84574 1.68678 1.28319 1.50170 0.92211 0.91575 0.92539 0.90299 0.92371 0.91474 0.93979 0.89299 0.74117 0.80706 0.81227 0.85779 0.87787 0.91718 0.86344 0.83692 0.71776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 71.98 0.70 -0.69 16 2 C -0.13 -1.65 4.88 30.59 0.15 -1.50 16 3 C -0.08 -0.99 2.32 -10.79 -0.03 -1.01 16 4 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.15 -1.46 8.50 71.99 0.61 -0.85 16 6 C 0.16 3.21 2.29 44.25 0.10 3.31 16 7 H 0.11 2.69 7.57 -2.39 -0.02 2.68 16 8 N -0.70 -13.63 4.54 -450.47 -2.04 -15.68 16 9 C 0.53 14.53 6.60 86.33 0.57 15.10 16 10 O -0.56 -21.71 11.84 -4.43 -0.05 -21.76 16 11 C -0.23 -4.72 9.90 23.61 0.23 -4.48 16 12 C 0.01 0.22 9.80 23.82 0.23 0.45 16 13 C -0.16 -5.73 4.54 -20.13 -0.09 -5.82 16 14 C 0.01 0.59 6.59 22.55 0.15 0.74 16 15 C -0.22 -10.69 9.97 22.35 0.22 -10.47 16 16 C 0.13 6.98 6.66 22.72 0.15 7.13 16 17 O -0.23 -14.80 9.74 -20.18 -0.20 -15.00 16 18 C -0.42 -25.68 9.48 67.93 0.64 -25.04 16 19 H 0.10 5.69 5.18 -2.91 -0.02 5.68 16 20 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 21 N -0.92 -58.60 13.67 21.62 0.30 -58.31 16 22 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 23 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 26 C -0.26 -12.52 9.14 22.34 0.20 -12.31 16 27 C -0.05 -1.89 9.78 22.55 0.22 -1.67 16 28 C 0.47 11.32 6.13 71.24 0.44 11.76 16 29 O -0.54 -16.82 17.08 21.98 0.38 -16.44 16 30 O -0.50 -9.20 10.65 -51.40 -0.55 -9.75 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.49 6.56 -2.39 -0.02 0.47 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 1.11 5.77 -2.39 -0.01 1.10 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.52 6.77 -2.39 -0.02 0.50 16 37 H 0.04 0.53 7.07 -2.39 -0.02 0.51 16 38 H 0.09 0.55 6.56 -2.39 -0.02 0.54 16 39 H 0.42 5.04 7.15 -92.71 -0.66 4.37 16 40 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.12 4.24 7.02 -2.91 -0.02 4.22 16 43 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 45 H 0.12 5.71 5.62 -2.91 -0.02 5.69 16 46 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 47 H 0.42 4.62 9.10 -74.06 -0.67 3.94 16 Total: -1.00 -89.81 387.67 4.53 -85.29 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.31 Total: 31.25 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.97 Total: -26.27 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.75 Total: -73.98 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -0.42 Total: -62.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -89.81 4.53 -85.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.793 kcal (2) G-P(sol) polarization free energy of solvation -89.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds