Wall clock time and date at job start Wed Apr 1 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47151 * 2 1 4 4 H 1.09001 * 109.46996 * 304.43071 * 3 2 1 5 5 C 1.53005 * 109.47030 * 184.43135 * 3 2 1 6 6 N 1.46500 * 109.46679 * 64.43403 * 3 2 1 7 7 C 1.46498 * 119.99862 * 242.42787 * 6 3 2 8 8 C 1.50702 * 109.47143 * 264.58438 * 7 6 3 9 9 O 1.20833 * 119.99887 * 5.08845 * 8 7 6 10 10 O 1.34228 * 120.00073 * 185.09493 * 8 7 6 11 11 C 1.34775 * 120.00145 * 62.43099 * 6 3 2 12 12 O 1.21724 * 120.00107 * 359.97438 * 11 6 3 13 13 C 1.46254 * 120.00140 * 179.97438 * 11 6 3 14 14 C 1.35017 * 120.00382 * 179.97438 * 13 11 6 15 15 C 1.46960 * 120.00524 * 179.97438 * 14 13 11 16 16 C 1.40021 * 120.10173 * 180.02562 * 15 14 13 17 17 C 1.37605 * 119.89343 * 179.97438 * 16 15 14 18 18 C 1.39175 * 120.10379 * 0.26099 * 17 16 15 19 19 O 1.35566 * 119.90030 * 179.74367 * 18 17 16 20 20 C 1.34787 * 116.99977 * 353.98256 * 19 18 17 21 21 H 1.08003 * 119.99511 * 5.10011 * 20 19 18 22 22 C 1.38718 * 120.00128 * 185.09377 * 20 19 18 23 23 N 1.31508 * 119.99884 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99950 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47665 * 89.99893 * 24 22 20 26 26 H 1.48504 * 109.47035 * 210.00357 * 24 22 20 27 27 H 1.48507 * 109.47256 * 329.99746 * 24 22 20 28 28 C 1.39176 * 120.19950 * 359.48352 * 18 17 16 29 29 C 1.37593 * 120.10329 * 0.51681 * 28 18 17 30 30 H 1.08998 * 109.47281 * 64.88035 * 1 2 3 31 31 H 1.09009 * 109.46890 * 184.88107 * 1 2 3 32 32 H 1.08997 * 109.47335 * 304.88040 * 1 2 3 33 33 H 1.09009 * 109.47182 * 240.00228 * 2 1 3 34 34 H 1.08994 * 109.47674 * 120.00262 * 2 1 3 35 35 H 1.09001 * 109.46719 * 60.00093 * 5 3 2 36 36 H 1.08993 * 109.46561 * 179.97438 * 5 3 2 37 37 H 1.08992 * 109.47435 * 300.00387 * 5 3 2 38 38 H 1.09001 * 109.47432 * 24.57903 * 7 6 3 39 39 H 1.08995 * 109.47116 * 144.58429 * 7 6 3 40 40 H 0.96702 * 116.99824 * 179.97438 * 10 8 7 41 41 H 1.08000 * 119.99844 * 359.97438 * 13 11 6 42 42 H 1.08000 * 119.99773 * 0.02562 * 14 13 11 43 43 H 1.07996 * 120.05219 * 359.96304 * 16 15 14 44 44 H 1.07998 * 119.94616 * 179.97438 * 17 16 15 45 45 H 0.96998 * 119.99921 * 179.97438 * 23 22 20 46 46 H 1.08003 * 119.94722 * 180.25435 * 28 18 17 47 47 H 1.08005 * 120.05160 * 179.76825 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6132 1.9788 -0.8476 5 6 3.5659 1.4440 -0.1115 6 7 1.6407 2.1016 1.2460 7 6 0.7488 3.2631 1.2071 8 6 1.5688 4.5272 1.2331 9 8 2.7747 4.4662 1.1865 10 8 0.9596 5.7209 1.3082 11 6 2.0940 1.6393 2.4281 12 8 2.8348 0.6740 2.4605 13 6 1.6959 2.2975 3.6720 14 6 2.1495 1.8342 4.8562 15 6 1.7500 2.4959 6.1061 16 6 2.2197 2.0174 7.3353 17 6 1.8432 2.6406 8.5030 18 6 0.9927 3.7415 8.4638 19 8 0.6203 4.3492 9.6170 20 6 1.0060 3.7648 10.7688 21 1 1.6537 2.9009 10.7454 22 6 0.5711 4.2731 11.9840 23 7 -0.2179 5.3249 12.0123 24 14 1.1062 3.4637 13.5802 25 1 2.3679 4.0879 14.0532 26 1 0.0486 3.6461 14.6065 27 1 1.3275 2.0134 13.3499 28 6 0.5276 4.2238 7.2439 29 6 0.8987 3.6071 6.0713 30 1 -0.3634 0.4362 -0.9304 31 1 -0.3633 -1.0240 0.0874 32 1 -0.3634 0.5877 0.8430 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.8629 0.9536 -1.0385 36 1 3.9291 2.4716 -0.1119 37 1 3.9927 0.9077 0.7360 38 1 0.1544 3.2344 0.2939 39 1 0.0865 3.2418 2.0725 40 1 1.5275 6.5035 1.3225 41 1 1.0390 3.1543 3.6432 42 1 2.8068 0.9777 4.8849 43 1 2.8762 1.1605 7.3669 44 1 2.2047 2.2720 9.4516 45 1 -0.5223 5.6801 12.8620 46 1 -0.1290 5.0810 7.2180 47 1 0.5342 3.9798 5.1253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493658502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:52 Heat of formation + Delta-G solvation = -130.453268 kcal Electronic energy + Delta-G solvation = -29958.457822 eV Core-core repulsion = 25685.828318 eV Total energy + Delta-G solvation = -4272.629504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77755 -40.86361 -40.55401 -38.59012 -37.45224 -36.90506 -35.03921 -34.44100 -33.74279 -31.98953 -31.05975 -29.77367 -28.83954 -27.52149 -25.47957 -24.30436 -23.76447 -23.13896 -22.50396 -21.19272 -20.10975 -19.31746 -19.11137 -18.85534 -18.17361 -17.61397 -17.38659 -16.63364 -16.48189 -16.33977 -15.94263 -15.79708 -15.63818 -15.46778 -14.95356 -14.82257 -14.64883 -14.41412 -14.13101 -14.08430 -13.93472 -13.64210 -13.57002 -13.34535 -13.14503 -13.02209 -12.74733 -12.71046 -12.58813 -12.46388 -12.24210 -12.15407 -12.13433 -11.81976 -11.78431 -11.59428 -11.23007 -11.11665 -10.59064 -10.57391 -9.91288 -9.83217 -8.70653 -8.52910 -6.18931 -0.28619 0.56664 1.09588 1.23872 1.35655 1.45017 1.52585 1.70164 2.14745 2.21083 2.51693 2.85515 3.16182 3.40060 3.48665 3.86707 3.90959 3.97128 4.05766 4.11833 4.20581 4.25277 4.27602 4.36724 4.45100 4.46164 4.53825 4.63400 4.68770 4.78450 4.82298 4.91939 4.99144 5.04776 5.11106 5.16812 5.20718 5.30091 5.31250 5.37814 5.47262 5.55754 5.62171 5.68374 5.70688 5.77972 5.96425 6.07905 6.31111 6.91483 7.02300 7.19268 7.68009 8.69057 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002101 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.330001 B =13325.075645 C =14122.575725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.150 3.850 4 H 0.114 0.886 5 C -0.167 4.167 6 N -0.589 5.589 7 C 0.112 3.888 8 C 0.457 3.543 9 O -0.544 6.544 10 O -0.510 6.510 11 C 0.559 3.441 12 O -0.568 6.568 13 C -0.258 4.258 14 C 0.021 3.979 15 C -0.173 4.173 16 C -0.039 4.039 17 C -0.248 4.248 18 C 0.132 3.868 19 O -0.218 6.218 20 C -0.417 4.417 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.270 1.270 27 H -0.253 1.253 28 C -0.205 4.205 29 C -0.037 4.037 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.165 0.835 39 H 0.143 0.857 40 H 0.426 0.574 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.275 0.725 46 H 0.125 0.875 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -5.446 -25.939 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.048 3.952 4 H 0.132 0.868 5 C -0.224 4.224 6 N -0.321 5.321 7 C -0.013 4.013 8 C 0.298 3.702 9 O -0.433 6.433 10 O -0.323 6.323 11 C 0.353 3.647 12 O -0.449 6.449 13 C -0.279 4.279 14 C 0.002 3.998 15 C -0.174 4.174 16 C -0.057 4.057 17 C -0.268 4.268 18 C 0.079 3.921 19 O -0.123 6.123 20 C -0.493 4.493 21 H 0.123 0.877 22 C -0.217 4.217 23 N -0.549 5.549 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.224 4.224 29 C -0.055 4.055 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.287 0.713 41 H 0.160 0.840 42 H 0.143 0.857 43 H 0.161 0.839 44 H 0.143 0.857 45 H 0.084 0.916 46 H 0.143 0.857 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.275 -5.951 -25.774 26.453 hybrid contribution 0.853 0.640 1.209 1.612 sum 0.578 -5.311 -24.564 25.139 Atomic orbital electron populations 1.21727 0.94322 1.01855 1.02436 1.21905 0.97213 0.95655 1.02805 1.21276 0.94791 0.93945 0.85196 0.86804 1.22147 0.96171 1.01524 1.02607 1.47596 1.49110 1.29092 1.06330 1.21483 0.90822 0.78709 1.10269 1.24616 0.87593 0.86769 0.71197 1.90772 1.17916 1.88051 1.46589 1.84485 1.45946 1.17183 1.84720 1.18384 0.79032 0.82861 0.84454 1.90722 1.37429 1.29138 1.87653 1.22840 1.08452 1.04929 0.91630 1.22187 0.92095 0.95013 0.90532 1.18772 1.05554 1.00378 0.92668 1.21304 0.96077 0.97679 0.90638 1.21202 1.05263 1.00397 0.99898 1.20174 0.92552 0.91607 0.87740 1.83884 1.68134 1.47893 1.12374 1.21893 1.31319 1.14447 0.81593 0.87746 1.26597 0.95762 0.96798 1.02499 1.70143 1.33080 1.23315 1.28398 0.84595 0.78295 0.78771 0.74659 1.18819 1.19496 1.17627 1.20403 1.07173 1.04778 0.90015 1.21217 0.94043 0.93021 0.97182 0.90816 0.93082 0.92958 0.89948 0.92937 0.90354 0.93697 0.93111 0.81750 0.83982 0.71254 0.83979 0.85682 0.83875 0.85717 0.91559 0.85747 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.85 71.98 0.71 -0.99 16 2 C -0.14 -2.14 5.31 30.59 0.16 -1.98 16 3 C 0.15 2.35 2.67 45.00 0.12 2.47 16 4 H 0.11 1.07 7.74 -2.39 -0.02 1.05 16 5 C -0.17 -3.41 9.08 71.98 0.65 -2.75 16 6 N -0.59 -10.35 1.29 -807.29 -1.05 -11.39 16 7 C 0.11 1.15 5.63 85.63 0.48 1.63 16 8 C 0.46 6.97 8.13 71.24 0.58 7.55 16 9 O -0.54 -13.30 16.83 21.94 0.37 -12.93 16 10 O -0.51 -5.39 13.42 -51.40 -0.69 -6.08 16 11 C 0.56 14.03 6.90 86.33 0.60 14.63 16 12 O -0.57 -17.95 12.42 -4.42 -0.05 -18.01 16 13 C -0.26 -6.19 8.50 23.61 0.20 -5.99 16 14 C 0.02 0.59 9.45 23.82 0.23 0.82 16 15 C -0.17 -5.45 5.87 -20.13 -0.12 -5.57 16 16 C -0.04 -1.33 9.78 22.55 0.22 -1.11 16 17 C -0.25 -10.42 9.14 22.35 0.20 -10.21 16 18 C 0.13 6.23 6.66 22.72 0.15 6.38 16 19 O -0.22 -12.54 9.74 -20.28 -0.20 -12.74 16 20 C -0.42 -23.36 9.48 67.93 0.64 -22.71 16 21 H 0.11 5.36 5.19 -2.91 -0.02 5.34 16 22 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 23 N -0.91 -54.04 13.67 21.62 0.30 -53.74 16 24 Si 1.02 41.37 29.55 68.60 2.03 43.39 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 28 C -0.20 -8.09 9.97 22.34 0.22 -7.86 16 29 C -0.04 -1.16 9.40 22.55 0.21 -0.94 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.65 7.60 -2.39 -0.02 0.63 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 1.20 6.24 -2.39 -0.01 1.19 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.05 7.83 -2.39 -0.02 1.03 16 37 H 0.05 1.38 5.99 -2.39 -0.01 1.36 16 38 H 0.17 0.38 7.83 -2.39 -0.02 0.36 16 39 H 0.14 1.01 6.42 -2.39 -0.02 1.00 16 40 H 0.43 2.07 9.10 -74.06 -0.67 1.39 16 41 H 0.14 2.68 4.25 -2.91 -0.01 2.67 16 42 H 0.13 3.51 7.52 -2.91 -0.02 3.48 16 43 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 44 H 0.13 5.29 5.62 -2.91 -0.02 5.27 16 45 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 47 H 0.16 3.55 6.16 -2.91 -0.02 3.54 16 Total: -1.00 -79.16 394.06 6.79 -72.37 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.35 Total: 26.27 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.73 Total: -27.14 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.75 Total: -65.14 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.57 Total: -49.76 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -79.16 6.79 -72.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493658502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.080 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds