Wall clock time and date at job start Wed Apr 1 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.99478 * 2 1 4 4 O 1.43751 * 109.88027 * 238.91848 * 2 1 3 5 5 C 1.44379 * 106.97523 * 214.06345 * 4 2 1 6 6 C 1.54994 * 103.48984 * 40.06297 * 5 4 2 7 7 C 1.54105 * 109.87969 * 121.08853 * 2 1 3 8 8 O 1.42899 * 110.48671 * 240.26290 * 7 2 1 9 9 C 1.52995 * 110.48619 * 2.77812 * 7 2 1 10 10 N 1.46493 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00223 * 179.97438 * 10 9 7 12 12 O 1.21723 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.46258 * 120.00315 * 179.97438 * 11 10 9 14 14 C 1.35018 * 120.00259 * 173.21156 * 13 11 10 15 15 C 1.46968 * 120.00126 * 348.68720 * 14 13 11 16 16 C 1.40024 * 120.09537 * 316.40653 * 15 14 13 17 17 C 1.37604 * 119.88990 * 179.74064 * 16 15 14 18 18 C 1.39173 * 120.10566 * 0.51218 * 17 16 15 19 19 O 1.35562 * 119.89938 * 179.74073 * 18 17 16 20 20 C 1.34784 * 116.99805 * 174.38042 * 19 18 17 21 21 H 1.07999 * 120.00535 * 5.06170 * 20 19 18 22 22 C 1.38721 * 120.00054 * 185.06120 * 20 19 18 23 23 N 1.31513 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00247 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47063 * 90.00202 * 24 22 20 26 26 H 1.48504 * 109.46907 * 210.00108 * 24 22 20 27 27 H 1.48498 * 109.46684 * 330.00101 * 24 22 20 28 28 C 1.39183 * 120.19895 * 359.76265 * 18 17 16 29 29 C 1.37595 * 120.10192 * 359.97438 * 28 18 17 30 30 H 1.09007 * 109.46874 * 179.62313 * 1 2 3 31 31 H 1.09000 * 109.47034 * 299.62779 * 1 2 3 32 32 H 1.09003 * 109.47310 * 59.62836 * 1 2 3 33 33 H 1.09005 * 110.61463 * 158.56033 * 5 4 2 34 34 H 1.08995 * 110.62019 * 281.55747 * 5 4 2 35 35 H 1.09004 * 110.90221 * 204.77560 * 6 5 4 36 36 H 1.08994 * 110.94244 * 81.18824 * 6 5 4 37 37 H 0.96698 * 113.99620 * 180.02562 * 8 7 2 38 38 H 1.09006 * 109.47209 * 299.99992 * 9 7 2 39 39 H 1.09004 * 109.47438 * 59.99844 * 9 7 2 40 40 H 0.97003 * 120.00238 * 0.02562 * 10 9 7 41 41 H 1.08000 * 119.99558 * 353.21689 * 13 11 10 42 42 H 1.08005 * 119.99939 * 168.68686 * 14 13 11 43 43 H 1.08000 * 120.05282 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.94304 * 180.23174 * 17 16 15 45 45 H 0.97003 * 120.00035 * 179.97438 * 23 22 20 46 46 H 1.07997 * 119.94450 * 179.97438 * 28 18 17 47 47 H 1.08006 * 120.04850 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0188 -0.6979 -1.1578 5 6 3.2379 -1.3641 -0.7648 6 6 2.9195 -1.8916 0.6574 7 6 2.0540 -0.7483 1.2411 8 8 2.8485 0.1208 2.0507 9 6 0.8899 -1.3192 2.0533 10 7 1.4123 -2.0243 3.2263 11 6 0.5635 -2.6115 4.0930 12 8 -0.6373 -2.5556 3.9013 13 6 1.0850 -3.3159 5.2638 14 6 0.2361 -3.7853 6.2029 15 6 -1.1767 -3.3805 6.1847 16 6 -1.5209 -2.0429 5.9544 17 6 -2.8451 -1.6695 5.9329 18 6 -3.8411 -2.6170 6.1502 19 8 -5.1442 -2.2435 6.1333 20 6 -6.0632 -3.2244 6.2340 21 1 -5.7489 -4.2434 6.4050 22 6 -7.4127 -2.9251 6.1181 23 7 -7.7955 -1.6843 5.9093 24 14 -8.6864 -4.2843 6.2584 25 1 -9.0961 -4.4342 7.6778 26 1 -9.8726 -3.9381 5.4347 27 1 -8.1030 -5.5611 5.7740 28 6 -3.5034 -3.9466 6.3853 29 6 -2.1821 -4.3301 6.4032 30 1 -0.3633 -1.0277 -0.0068 31 1 -0.3633 0.5080 0.8933 32 1 -0.3634 0.5196 -0.8866 33 1 3.4584 -2.1908 -1.4403 34 1 4.0685 -0.6589 -0.7356 35 1 3.8332 -2.0226 1.2372 36 1 2.3541 -2.8222 0.6103 37 1 3.2046 -0.2988 2.8457 38 1 0.2402 -0.5063 2.3779 39 1 0.3213 -2.0137 1.4348 40 1 2.3691 -2.0679 3.3797 41 1 2.1493 -3.4606 5.3772 42 1 0.5952 -4.4582 6.9676 43 1 -0.7484 -1.3062 5.7901 44 1 -3.1117 -0.6388 5.7516 45 1 -8.7392 -1.4751 5.8279 46 1 -4.2796 -4.6783 6.5538 47 1 -1.9210 -5.3621 6.5861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493750666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:23 Heat of formation + Delta-G solvation = -96.158670 kcal Electronic energy + Delta-G solvation = -30238.484149 eV Core-core repulsion = 25967.341771 eV Total energy + Delta-G solvation = -4271.142378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86696 -39.60917 -38.69275 -37.03086 -36.39682 -34.35093 -33.10029 -32.46078 -32.11438 -31.43405 -30.13839 -28.38157 -26.93243 -25.50527 -25.14123 -23.06448 -22.75969 -21.80133 -21.00310 -20.32669 -19.40472 -17.99636 -17.76484 -17.33760 -16.73974 -16.45048 -16.04774 -15.81244 -15.50478 -15.28906 -14.65838 -14.56864 -14.28753 -14.01225 -13.86030 -13.60807 -13.47667 -13.38536 -13.08473 -12.99433 -12.80674 -12.59027 -12.46501 -12.20100 -12.05381 -11.92683 -11.70710 -11.63050 -11.39385 -11.04075 -10.94968 -10.71311 -10.63486 -10.47062 -10.42302 -10.07282 -9.56171 -9.45648 -9.19066 -9.09476 -8.71438 -7.94821 -6.88815 -6.46884 -4.02599 1.19276 2.40365 2.67427 3.10023 3.12948 3.14442 3.18823 3.40360 3.50020 3.59166 3.96310 3.99333 4.11624 4.44772 4.66340 4.67820 4.79134 4.98094 5.01739 5.09030 5.09870 5.17925 5.21272 5.23632 5.33815 5.37953 5.43292 5.47379 5.54454 5.66751 5.71530 5.73887 5.82461 5.98123 6.22444 6.28097 6.30998 6.41223 6.45830 6.56826 6.76683 7.01461 7.08349 7.10956 7.33948 7.41857 7.48964 7.51958 7.90365 7.99713 8.44413 8.98698 9.70312 10.70879 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.002330 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.102146 B =12016.782626 C =13262.619808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 H 0.084 0.916 4 O -0.368 6.368 5 C 0.050 3.950 6 C -0.183 4.183 7 C 0.093 3.907 8 O -0.546 6.546 9 C 0.101 3.899 10 N -0.739 5.739 11 C 0.540 3.460 12 O -0.506 6.506 13 C -0.271 4.271 14 C 0.032 3.968 15 C -0.193 4.193 16 C 0.012 3.988 17 C -0.203 4.203 18 C 0.172 3.828 19 O -0.172 6.172 20 C -0.390 4.390 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.251 4.251 29 C -0.041 4.041 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.377 0.623 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.389 0.611 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.271 0.729 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.004 -1.212 -7.270 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.102 0.898 4 O -0.288 6.288 5 C -0.027 4.027 6 C -0.221 4.221 7 C 0.051 3.949 8 O -0.352 6.352 9 C -0.023 4.023 10 N -0.394 5.394 11 C 0.331 3.669 12 O -0.381 6.381 13 C -0.292 4.292 14 C 0.012 3.988 15 C -0.193 4.193 16 C -0.006 4.006 17 C -0.222 4.222 18 C 0.117 3.883 19 O -0.074 6.074 20 C -0.466 4.466 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.270 4.270 29 C -0.059 4.059 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.223 0.777 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.081 0.919 46 H 0.144 0.856 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.483 -0.381 -8.157 23.920 hybrid contribution 0.312 -1.216 0.699 1.437 sum 22.794 -1.596 -7.458 24.037 Atomic orbital electron populations 1.22094 0.92343 1.03830 1.03425 1.22558 0.95533 0.96176 0.82396 0.89770 1.88953 1.39648 1.67763 1.32389 1.23490 0.87918 0.96517 0.94744 1.23854 1.00963 0.99320 0.97950 1.22840 0.90368 0.89795 0.91862 1.86587 1.69489 1.40221 1.38903 1.22113 0.95596 0.97374 0.87179 1.45954 1.09588 1.57638 1.26249 1.18491 0.86405 0.78576 0.83474 1.91018 1.14260 1.58183 1.74659 1.22543 0.99408 1.10177 0.97090 1.22350 0.92638 0.90583 0.93204 1.18286 0.91457 0.94271 1.15335 1.20432 0.94339 0.94092 0.91757 1.20006 0.91216 0.98857 1.12109 1.19529 0.85524 0.92302 0.90973 1.83905 1.10423 1.35677 1.77382 1.21400 0.85387 0.88942 1.50888 0.88870 1.25334 0.97080 0.97759 0.96391 1.70025 1.17019 1.17843 1.44459 0.85695 0.79402 0.79638 0.78614 1.19821 1.20202 1.19126 1.20954 0.96376 0.96562 1.13106 1.20740 0.92149 0.97217 0.95792 0.91038 0.90225 0.91148 0.88666 0.91750 0.89462 0.89148 0.77413 0.89947 0.89988 0.77722 0.86201 0.86049 0.88130 0.86834 0.91921 0.85638 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.40 37.16 0.31 -1.23 16 2 C 0.09 0.88 3.88 -26.15 -0.10 0.78 16 3 H 0.08 0.83 7.97 -51.93 -0.41 0.41 16 4 O -0.37 -3.82 11.19 -35.23 -0.39 -4.22 16 5 C 0.05 0.37 7.72 38.21 0.29 0.66 16 6 C -0.18 -1.22 6.08 -24.72 -0.15 -1.37 16 7 C 0.09 0.77 1.07 -89.09 -0.10 0.67 16 8 O -0.55 -4.39 12.98 -35.23 -0.46 -4.84 16 9 C 0.10 1.04 3.53 -4.05 -0.01 1.02 16 10 N -0.74 -7.08 5.15 -61.76 -0.32 -7.39 16 11 C 0.54 7.40 6.77 -13.04 -0.09 7.31 16 12 O -0.51 -9.48 12.18 5.17 0.06 -9.42 16 13 C -0.27 -3.16 9.90 -37.51 -0.37 -3.53 16 14 C 0.03 0.43 9.80 -37.19 -0.36 0.06 16 15 C -0.19 -3.48 4.54 -105.03 -0.48 -3.96 16 16 C 0.01 0.24 6.59 -39.14 -0.26 -0.01 16 17 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 18 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 19 O -0.17 -5.03 9.74 0.75 0.01 -5.03 16 20 C -0.39 -11.09 9.48 30.91 0.29 -10.80 16 21 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 24 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 C -0.25 -5.68 9.14 -39.47 -0.36 -6.04 16 29 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 30 H 0.07 0.73 6.67 -51.93 -0.35 0.38 16 31 H 0.08 0.76 6.87 -51.93 -0.36 0.40 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 36 H 0.09 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.38 1.79 7.76 45.56 0.35 2.14 16 38 H 0.08 0.99 6.74 -51.93 -0.35 0.64 16 39 H 0.08 0.95 6.78 -51.93 -0.35 0.60 16 40 H 0.39 2.34 7.22 -40.82 -0.29 2.05 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.10 1.79 7.02 -52.49 -0.37 1.43 16 44 H 0.11 2.53 8.06 -52.49 -0.42 2.11 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.13 2.82 5.62 -52.49 -0.29 2.52 16 47 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -35.09 383.34 -7.72 -42.81 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.62 Total: 8.84 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.51 Total: -17.51 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.44 Total: -32.09 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.78 Total: -23.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.09 -7.72 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493750666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.351 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds