Wall clock time and date at job start Wed Apr 1 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.99478 * 2 1 4 4 O 1.43751 * 109.88027 * 238.91848 * 2 1 3 5 5 C 1.44379 * 106.97523 * 214.06345 * 4 2 1 6 6 C 1.54994 * 103.48984 * 40.06297 * 5 4 2 7 7 C 1.54105 * 109.87969 * 121.08853 * 2 1 3 8 8 O 1.42899 * 110.48671 * 240.26290 * 7 2 1 9 9 C 1.52995 * 110.48619 * 2.77812 * 7 2 1 10 10 N 1.46493 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00223 * 179.97438 * 10 9 7 12 12 O 1.21723 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.46258 * 120.00315 * 179.97438 * 11 10 9 14 14 C 1.35018 * 120.00259 * 173.21156 * 13 11 10 15 15 C 1.46968 * 120.00126 * 348.68720 * 14 13 11 16 16 C 1.40024 * 120.09537 * 316.40653 * 15 14 13 17 17 C 1.37604 * 119.88990 * 179.74064 * 16 15 14 18 18 C 1.39173 * 120.10566 * 0.51218 * 17 16 15 19 19 O 1.35562 * 119.89938 * 179.74073 * 18 17 16 20 20 C 1.34784 * 116.99805 * 174.38042 * 19 18 17 21 21 H 1.07999 * 120.00535 * 5.06170 * 20 19 18 22 22 C 1.38721 * 120.00054 * 185.06120 * 20 19 18 23 23 N 1.31513 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00247 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47063 * 90.00202 * 24 22 20 26 26 H 1.48504 * 109.46907 * 210.00108 * 24 22 20 27 27 H 1.48498 * 109.46684 * 330.00101 * 24 22 20 28 28 C 1.39183 * 120.19895 * 359.76265 * 18 17 16 29 29 C 1.37595 * 120.10192 * 359.97438 * 28 18 17 30 30 H 1.09007 * 109.46874 * 179.62313 * 1 2 3 31 31 H 1.09000 * 109.47034 * 299.62779 * 1 2 3 32 32 H 1.09003 * 109.47310 * 59.62836 * 1 2 3 33 33 H 1.09005 * 110.61463 * 158.56033 * 5 4 2 34 34 H 1.08995 * 110.62019 * 281.55747 * 5 4 2 35 35 H 1.09004 * 110.90221 * 204.77560 * 6 5 4 36 36 H 1.08994 * 110.94244 * 81.18824 * 6 5 4 37 37 H 0.96698 * 113.99620 * 180.02562 * 8 7 2 38 38 H 1.09006 * 109.47209 * 299.99992 * 9 7 2 39 39 H 1.09004 * 109.47438 * 59.99844 * 9 7 2 40 40 H 0.97003 * 120.00238 * 0.02562 * 10 9 7 41 41 H 1.08000 * 119.99558 * 353.21689 * 13 11 10 42 42 H 1.08005 * 119.99939 * 168.68686 * 14 13 11 43 43 H 1.08000 * 120.05282 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.94304 * 180.23174 * 17 16 15 45 45 H 0.97003 * 120.00035 * 179.97438 * 23 22 20 46 46 H 1.07997 * 119.94450 * 179.97438 * 28 18 17 47 47 H 1.08006 * 120.04850 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0188 -0.6979 -1.1578 5 6 3.2379 -1.3641 -0.7648 6 6 2.9195 -1.8916 0.6574 7 6 2.0540 -0.7483 1.2411 8 8 2.8485 0.1208 2.0507 9 6 0.8899 -1.3192 2.0533 10 7 1.4123 -2.0243 3.2263 11 6 0.5635 -2.6115 4.0930 12 8 -0.6373 -2.5556 3.9013 13 6 1.0850 -3.3159 5.2638 14 6 0.2361 -3.7853 6.2029 15 6 -1.1767 -3.3805 6.1847 16 6 -1.5209 -2.0429 5.9544 17 6 -2.8451 -1.6695 5.9329 18 6 -3.8411 -2.6170 6.1502 19 8 -5.1442 -2.2435 6.1333 20 6 -6.0632 -3.2244 6.2340 21 1 -5.7489 -4.2434 6.4050 22 6 -7.4127 -2.9251 6.1181 23 7 -7.7955 -1.6843 5.9093 24 14 -8.6864 -4.2843 6.2584 25 1 -9.0961 -4.4342 7.6778 26 1 -9.8726 -3.9381 5.4347 27 1 -8.1030 -5.5611 5.7740 28 6 -3.5034 -3.9466 6.3853 29 6 -2.1821 -4.3301 6.4032 30 1 -0.3633 -1.0277 -0.0068 31 1 -0.3633 0.5080 0.8933 32 1 -0.3634 0.5196 -0.8866 33 1 3.4584 -2.1908 -1.4403 34 1 4.0685 -0.6589 -0.7356 35 1 3.8332 -2.0226 1.2372 36 1 2.3541 -2.8222 0.6103 37 1 3.2046 -0.2988 2.8457 38 1 0.2402 -0.5063 2.3779 39 1 0.3213 -2.0137 1.4348 40 1 2.3691 -2.0679 3.3797 41 1 2.1493 -3.4606 5.3772 42 1 0.5952 -4.4582 6.9676 43 1 -0.7484 -1.3062 5.7901 44 1 -3.1117 -0.6388 5.7516 45 1 -8.7392 -1.4751 5.8279 46 1 -4.2796 -4.6783 6.5538 47 1 -1.9210 -5.3621 6.5861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493750666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:22 Heat of formation + Delta-G solvation = -124.151567 kcal Electronic energy + Delta-G solvation = -30239.698012 eV Core-core repulsion = 25967.341771 eV Total energy + Delta-G solvation = -4272.356242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65637 -40.92978 -40.23920 -38.27351 -37.56280 -35.32657 -34.59237 -33.93987 -33.21738 -32.09555 -31.82025 -29.80661 -27.98008 -27.33093 -26.01850 -24.23255 -23.55279 -23.42507 -22.39844 -21.15633 -20.52838 -19.78363 -18.95697 -18.43544 -18.18198 -17.18608 -16.83660 -16.65931 -16.45209 -16.37598 -16.34044 -16.11573 -15.63007 -15.54414 -15.23510 -14.70782 -14.64493 -14.55364 -14.35978 -14.16466 -13.90461 -13.70692 -13.56368 -13.52314 -13.20740 -13.05715 -12.90233 -12.65497 -12.60635 -12.35169 -12.25026 -12.22377 -12.12633 -11.66847 -11.24279 -11.12482 -10.98064 -10.80241 -10.66215 -10.39702 -10.09404 -9.58102 -8.55661 -8.48804 -6.16220 -0.00437 0.71542 1.12635 1.32984 1.45029 1.51659 2.16655 2.20511 2.47089 2.75016 2.86768 2.89421 3.20778 3.34406 3.40391 3.52619 3.77506 3.99917 4.04232 4.07517 4.15119 4.16218 4.17472 4.23151 4.40760 4.50689 4.54281 4.57465 4.60542 4.63739 4.77280 4.78198 4.88890 4.93264 4.97351 5.05728 5.09586 5.15180 5.25579 5.27394 5.41230 5.45914 5.68060 5.72754 5.78778 5.84525 6.02152 6.25331 6.58713 6.66738 6.95007 7.41687 7.77370 8.74321 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.002330 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.102146 B =12016.782626 C =13262.619808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.088 3.912 3 H 0.081 0.919 4 O -0.391 6.391 5 C 0.042 3.958 6 C -0.174 4.174 7 C 0.105 3.895 8 O -0.553 6.553 9 C 0.105 3.895 10 N -0.714 5.714 11 C 0.527 3.473 12 O -0.565 6.565 13 C -0.229 4.229 14 C 0.005 3.995 15 C -0.161 4.161 16 C 0.015 3.985 17 C -0.222 4.222 18 C 0.126 3.874 19 O -0.231 6.231 20 C -0.415 4.415 21 H 0.103 0.897 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.259 4.259 29 C -0.048 4.048 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.393 0.607 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.273 0.727 46 H 0.119 0.881 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.186 -3.917 -6.879 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.099 0.901 4 O -0.311 6.311 5 C -0.034 4.034 6 C -0.212 4.212 7 C 0.063 3.937 8 O -0.362 6.362 9 C -0.019 4.019 10 N -0.368 5.368 11 C 0.318 3.682 12 O -0.445 6.445 13 C -0.249 4.249 14 C -0.014 4.014 15 C -0.162 4.162 16 C -0.004 4.004 17 C -0.241 4.241 18 C 0.075 3.925 19 O -0.138 6.138 20 C -0.491 4.491 21 H 0.120 0.880 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.177 1.177 28 C -0.279 4.279 29 C -0.066 4.066 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.196 0.804 42 H 0.187 0.813 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 27.810 -3.096 -7.760 29.038 hybrid contribution -0.672 -0.329 0.434 0.865 sum 27.139 -3.425 -7.326 28.318 Atomic orbital electron populations 1.22064 0.93176 1.03117 1.03283 1.22540 0.95027 0.96301 0.83205 0.90143 1.88933 1.41057 1.68149 1.32946 1.23734 0.87042 0.97066 0.95568 1.23837 1.01674 0.98010 0.97688 1.22592 0.89916 0.90168 0.90992 1.86584 1.69222 1.40604 1.39765 1.21990 0.96273 0.96373 0.87291 1.45693 1.10543 1.55663 1.24924 1.19144 0.85974 0.78529 0.84566 1.91032 1.16986 1.60479 1.76019 1.23051 1.01934 1.05553 0.94395 1.22592 0.89495 0.93072 0.96231 1.18893 0.94516 0.92981 1.09762 1.20670 0.93040 0.95768 0.90897 1.20187 0.92649 0.98151 1.13141 1.20020 0.84896 0.94258 0.93284 1.83874 1.12018 1.36742 1.81135 1.21884 0.86142 0.89490 1.51579 0.88012 1.26682 0.99109 1.00682 0.95720 1.70179 1.17541 1.20558 1.47671 0.84554 0.75946 0.76240 0.79225 1.18416 1.19520 1.17684 1.21095 0.98233 0.95261 1.13275 1.21192 0.90656 0.99590 0.95154 0.91991 0.90698 0.91036 0.87206 0.90884 0.86391 0.89511 0.75562 0.92170 0.91593 0.74927 0.80407 0.81297 0.86223 0.88248 0.91764 0.86310 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.40 71.98 0.60 -2.62 16 2 C 0.09 1.63 3.88 30.97 0.12 1.75 16 3 H 0.08 1.54 7.97 -2.39 -0.02 1.52 16 4 O -0.39 -7.73 11.19 -148.98 -1.67 -9.39 16 5 C 0.04 0.51 7.72 72.66 0.56 1.07 16 6 C -0.17 -1.70 6.08 31.89 0.19 -1.50 16 7 C 0.11 1.51 1.07 -9.80 -0.01 1.50 16 8 O -0.55 -7.10 12.98 -148.98 -1.93 -9.04 16 9 C 0.11 2.01 3.53 86.38 0.30 2.32 16 10 N -0.71 -10.89 5.15 -467.51 -2.41 -13.30 16 11 C 0.53 12.44 6.77 86.33 0.58 13.03 16 12 O -0.57 -20.51 12.18 -4.42 -0.05 -20.56 16 13 C -0.23 -3.79 9.90 23.61 0.23 -3.56 16 14 C 0.01 0.11 9.80 23.82 0.23 0.34 16 15 C -0.16 -5.38 4.54 -20.13 -0.09 -5.47 16 16 C 0.01 0.57 6.59 22.55 0.15 0.71 16 17 C -0.22 -10.78 9.97 22.34 0.22 -10.56 16 18 C 0.13 6.87 6.66 22.72 0.15 7.02 16 19 O -0.23 -14.87 9.74 -20.21 -0.20 -15.06 16 20 C -0.42 -25.38 9.48 67.94 0.64 -24.73 16 21 H 0.10 5.71 5.18 -2.91 -0.02 5.70 16 22 C -0.02 -1.45 5.49 84.86 0.47 -0.99 16 23 N -0.92 -58.71 13.67 21.62 0.30 -58.41 16 24 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 28 C -0.26 -12.16 9.14 22.34 0.20 -11.96 16 29 C -0.05 -1.76 9.78 22.55 0.22 -1.54 16 30 H 0.06 1.34 6.67 -2.38 -0.02 1.33 16 31 H 0.07 1.54 6.87 -2.39 -0.02 1.53 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 0.44 8.09 -2.39 -0.02 0.42 16 36 H 0.09 0.96 7.85 -2.39 -0.02 0.94 16 37 H 0.39 1.91 7.76 -74.06 -0.57 1.33 16 38 H 0.06 1.45 6.74 -2.38 -0.02 1.44 16 39 H 0.07 1.52 6.78 -2.38 -0.02 1.50 16 40 H 0.41 2.54 7.22 -92.71 -0.67 1.87 16 41 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.12 4.11 7.02 -2.91 -0.02 4.09 16 44 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 46 H 0.12 5.59 5.62 -2.91 -0.02 5.57 16 47 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -87.67 383.34 0.64 -87.03 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.22 Total: 27.56 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.79 Total: -35.18 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.11 Total: -71.72 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -3.85 Total: -54.06 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -87.67 0.64 -87.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493750666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.122 kcal (2) G-P(sol) polarization free energy of solvation -87.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds