Wall clock time and date at job start Wed Apr 1 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46725 * 2 1 4 4 H 1.09005 * 109.46748 * 183.88091 * 3 2 1 5 5 C 1.50694 * 109.47340 * 303.87846 * 3 2 1 6 6 H 1.08000 * 119.99803 * 115.40209 * 5 3 2 7 7 C 1.37877 * 120.00189 * 295.40750 * 5 3 2 8 8 N 1.31518 * 120.00060 * 354.12777 * 7 5 3 9 9 Si 1.86806 * 120.00212 * 174.12968 * 7 5 3 10 10 H 1.48496 * 109.47255 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47115 * 300.00071 * 9 7 5 12 12 H 1.48505 * 109.46905 * 59.99824 * 9 7 5 13 13 N 1.46899 * 109.47183 * 63.88075 * 3 2 1 14 14 C 1.46905 * 110.99666 * 80.81644 * 13 3 2 15 15 C 1.50705 * 109.46913 * 184.69027 * 14 13 3 16 16 O 1.21281 * 119.99715 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99978 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47091 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47123 * 179.97438 * 19 18 17 21 21 N 1.27932 * 124.23964 * 89.70203 * 20 19 18 22 22 C 1.34663 * 117.84951 * 179.81719 * 21 20 19 23 23 C 1.40962 * 129.69213 * 180.17786 * 22 21 20 24 24 C 1.36177 * 120.42967 * 180.33204 * 23 22 21 25 25 C 1.38791 * 120.77465 * 359.95708 * 24 23 22 26 26 C 1.37651 * 120.06827 * 0.02562 * 25 24 23 27 27 C 1.39336 * 119.95302 * 0.02562 * 26 25 24 28 28 S 1.70651 * 124.24150 * 269.99914 * 20 19 18 29 29 H 1.08994 * 109.47538 * 304.86719 * 1 2 3 30 30 H 1.09004 * 109.46778 * 64.86826 * 1 2 3 31 31 H 1.09000 * 109.47135 * 184.86349 * 1 2 3 32 32 H 1.08996 * 109.47206 * 240.00009 * 2 1 3 33 33 H 1.09002 * 109.47150 * 119.99639 * 2 1 3 34 34 H 0.97000 * 119.99813 * 354.18112 * 8 7 5 35 35 H 1.00894 * 111.00124 * 316.86756 * 13 3 2 36 36 H 1.08995 * 109.47546 * 304.68963 * 14 13 3 37 37 H 1.09001 * 109.47386 * 64.69406 * 14 13 3 38 38 H 0.96998 * 120.00004 * 0.02562 * 17 15 14 39 39 H 1.09005 * 109.46937 * 300.00093 * 18 17 15 40 40 H 1.08991 * 109.47028 * 60.00291 * 18 17 15 41 41 H 1.09002 * 109.47151 * 300.00040 * 19 18 17 42 42 H 1.09001 * 109.47370 * 60.00031 * 19 18 17 43 43 H 1.08004 * 119.78307 * 0.31047 * 23 22 21 44 44 H 1.07996 * 119.61219 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.96348 * 180.02562 * 25 24 23 46 46 H 1.07995 * 120.02191 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1277 1.4433 -0.0696 5 6 1.4606 2.1801 -1.1795 6 1 0.7881 3.0100 -1.0202 7 6 1.7891 1.7955 -2.4622 8 7 2.6952 0.8624 -2.6572 9 14 0.9473 2.5997 -3.9230 10 1 1.4741 2.0143 -5.1819 11 1 -0.5167 2.3645 -3.8418 12 1 1.2156 4.0602 -3.9066 13 7 1.6282 2.1074 1.2435 14 6 2.5278 1.7567 2.3507 15 6 2.0099 2.3623 3.6299 16 8 0.9915 3.0207 3.6201 17 7 2.6779 2.1712 4.7847 18 6 2.1741 2.7595 6.0283 19 6 3.1111 2.3943 7.1813 20 6 2.5932 2.9999 8.4604 21 7 1.7746 2.4177 9.2527 22 6 1.3986 3.0775 10.3648 23 6 0.5249 2.6782 11.3964 24 6 0.2701 3.5092 12.4447 25 6 0.8641 4.7614 12.5189 26 6 1.7219 5.1778 11.5261 27 6 1.9935 4.3413 10.4454 28 16 3.0196 4.5510 9.0299 29 1 -0.3634 0.5874 0.8431 30 1 -0.3633 0.4365 -0.9304 31 1 -0.3633 -1.0240 0.0871 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1927 0.5048 -1.9052 35 1 0.6706 1.8864 1.4719 36 1 2.5717 0.6725 2.4537 37 1 3.5260 2.1427 2.1441 38 1 3.4922 1.6443 4.7925 39 1 2.1303 3.8438 5.9256 40 1 1.1760 2.3734 6.2345 41 1 3.1553 1.3100 7.2841 42 1 4.1092 2.7807 6.9749 43 1 0.0542 1.7070 11.3549 44 1 -0.4018 3.1900 13.2276 45 1 0.6531 5.4097 13.3565 46 1 2.1834 6.1524 11.5845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582130849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:36 Heat of formation + Delta-G solvation = -9.959282 kcal Electronic energy + Delta-G solvation = -26189.925197 eV Core-core repulsion = 22397.566327 eV Total energy + Delta-G solvation = -3792.358870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44306 -40.83653 -38.53008 -38.20231 -36.38932 -34.59462 -33.15295 -32.38759 -32.12856 -30.09197 -28.72257 -26.80529 -25.63547 -25.26367 -24.28628 -23.29507 -22.01150 -21.55308 -21.24237 -19.60674 -19.08000 -17.86680 -17.72374 -17.53492 -16.88969 -16.53703 -16.32164 -16.02622 -15.80303 -15.71537 -15.45547 -15.36866 -14.97396 -14.77294 -14.66824 -14.29464 -13.90926 -13.60580 -13.53196 -13.47698 -13.41020 -13.07788 -12.96779 -12.61624 -12.55147 -12.47966 -12.10220 -11.94064 -11.90021 -11.89640 -11.67692 -11.19987 -11.06337 -10.75578 -10.57936 -10.37272 -10.22264 -9.70145 -9.17498 -9.05913 -8.48353 -6.17739 -0.68589 0.11929 0.16477 0.61505 1.23662 1.57085 1.57350 1.63186 1.82750 1.98738 2.61553 2.65738 2.83243 3.26789 3.51985 3.60708 3.69396 3.84098 3.91523 3.93431 4.05289 4.25895 4.28765 4.30083 4.31309 4.39304 4.41122 4.46460 4.56057 4.60059 4.72750 4.83169 4.89063 4.93072 5.08890 5.09791 5.21752 5.22710 5.30467 5.38383 5.42514 5.52048 5.73764 5.95313 6.21586 6.42147 6.50610 6.57370 6.69043 6.82664 7.21094 7.55329 8.88219 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.001571 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.198745 B =17817.226934 C =17959.803369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 C 0.208 3.792 4 H 0.009 0.991 5 C -0.578 4.578 6 H 0.037 0.963 7 C -0.024 4.024 8 N -0.936 5.936 9 Si 1.105 2.895 10 H -0.284 1.284 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.041 3.959 15 C 0.518 3.482 16 O -0.572 6.572 17 N -0.714 5.714 18 C 0.134 3.866 19 C -0.050 4.050 20 C 0.085 3.915 21 N -0.490 5.490 22 C 0.048 3.952 23 C -0.083 4.083 24 C -0.100 4.100 25 C -0.094 4.094 26 C -0.083 4.083 27 C -0.204 4.204 28 S 0.123 5.877 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.260 0.740 35 H 0.336 0.664 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.421 0.579 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.138 0.862 44 H 0.167 0.833 45 H 0.171 0.829 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 4.277 34.277 34.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C 0.099 3.901 4 H 0.027 0.973 5 C -0.617 4.617 6 H 0.056 0.944 7 C -0.222 4.222 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.092 4.092 15 C 0.305 3.695 16 O -0.450 6.450 17 N -0.368 5.368 18 C 0.008 3.992 19 C -0.091 4.091 20 C -0.200 4.200 21 N -0.204 5.204 22 C -0.072 4.072 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.323 4.323 28 S 0.379 5.621 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.259 0.741 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.184 0.816 45 H 0.188 0.812 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.307 5.522 31.919 32.475 hybrid contribution -0.302 -1.541 2.140 2.654 sum 2.005 3.981 34.058 34.349 Atomic orbital electron populations 1.21475 0.95748 0.99849 1.01008 1.22088 0.97049 0.99806 0.99496 1.19167 0.94049 0.89438 0.87465 0.97321 1.22064 1.29899 1.17290 0.92460 0.94417 1.26850 0.96715 0.95909 1.02727 1.70905 1.23539 1.28028 1.34978 0.83069 0.75568 0.75364 0.73142 1.20997 1.20161 1.20436 1.60462 1.05827 1.62700 1.02069 1.21906 0.99085 0.99407 0.88783 1.20855 0.83399 0.79644 0.85632 1.90685 1.26464 1.41037 1.86793 1.45668 1.29660 1.55213 1.06306 1.21096 0.97227 0.98396 0.82465 1.20547 0.99716 1.03581 0.85246 1.26633 0.97225 0.95789 1.00380 1.66169 1.13723 1.36428 1.04092 1.19567 1.01738 0.91142 0.94748 1.20715 0.96265 1.01428 0.92018 1.21186 0.99488 0.93705 0.97714 1.21647 0.94661 0.96590 0.98610 1.20770 0.98873 0.99337 0.91586 1.24226 1.05479 1.00187 1.02406 1.83869 1.45788 1.17276 1.15120 0.93710 0.93920 0.92814 0.93630 0.93497 0.92967 0.84422 0.91089 0.87565 0.74147 0.92038 0.92968 0.86457 0.85544 0.84374 0.81577 0.81195 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.38 71.98 0.68 -4.48 16 2 C -0.14 -6.44 5.46 30.60 0.17 -6.27 16 3 C 0.21 10.19 1.95 44.17 0.09 10.27 16 4 H 0.01 0.47 7.31 -2.38 -0.02 0.45 16 5 C -0.58 -32.44 7.43 25.60 0.19 -32.25 16 6 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 7 C -0.02 -1.33 5.27 84.65 0.45 -0.89 16 8 N -0.94 -55.19 12.87 21.45 0.28 -54.92 16 9 Si 1.10 51.10 29.91 68.60 2.05 53.15 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.68 -29.70 5.93 -499.45 -2.96 -32.66 16 14 C 0.04 1.33 5.99 85.56 0.51 1.84 16 15 C 0.52 16.31 7.86 87.66 0.69 17.00 16 16 O -0.57 -23.60 16.10 -3.03 -0.05 -23.65 16 17 N -0.71 -14.86 5.56 -463.06 -2.57 -17.43 16 18 C 0.13 2.74 5.66 86.38 0.49 3.23 16 19 C -0.05 -0.69 5.89 29.85 0.18 -0.52 16 20 C 0.08 1.61 6.54 88.68 0.58 2.19 16 21 N -0.49 -11.42 10.57 -182.52 -1.93 -13.34 16 22 C 0.05 1.02 7.00 39.78 0.28 1.29 16 23 C -0.08 -1.35 10.05 22.46 0.23 -1.12 16 24 C -0.10 -0.99 9.94 21.92 0.22 -0.77 16 25 C -0.09 -0.81 10.04 22.26 0.22 -0.58 16 26 C -0.08 -1.05 10.07 22.40 0.23 -0.82 16 27 C -0.20 -3.77 6.56 22.94 0.15 -3.62 16 28 S 0.12 2.06 23.11 -56.49 -1.31 0.75 16 29 H 0.04 1.78 6.24 -2.39 -0.01 1.77 16 30 H 0.04 1.98 7.30 -2.38 -0.02 1.97 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 2.26 6.27 -2.39 -0.01 2.25 16 33 H 0.05 1.80 7.04 -2.39 -0.02 1.79 16 34 H 0.26 15.25 6.05 -92.71 -0.56 14.69 16 35 H 0.34 15.05 6.02 -89.70 -0.54 14.51 16 36 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.42 5.42 8.47 -92.71 -0.79 4.64 16 39 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 44 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 45 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 46 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -77.42 391.03 -1.25 -78.67 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.10 Total: 24.90 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.33 Total: -15.48 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -7.19 Total: -118.35 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.31 Total: 0.75 kcal Total: -77.42 -1.25 -78.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582130849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.712 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds