Wall clock time and date at job start Wed Apr 1 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00060 * 2 1 4 4 C 1.38754 * 120.05484 * 0.25293 * 3 2 1 5 5 C 1.38119 * 119.94144 * 180.31919 * 4 3 2 6 6 C 1.38295 * 120.05698 * 359.67891 * 5 4 3 7 7 C 1.38242 * 120.10887 * 0.02688 * 6 5 4 8 8 C 1.38163 * 120.05722 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02741 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46683 * 264.99547 * 9 8 7 11 11 C 1.50701 * 120.00132 * 274.99894 * 10 9 8 12 12 C 1.33076 * 120.00080 * 94.99973 * 10 9 8 13 13 C 1.46950 * 120.00404 * 174.05589 * 12 10 9 14 14 O 1.21533 * 119.99562 * 5.17621 * 13 12 10 15 15 O 1.34799 * 120.00355 * 185.17540 * 13 12 10 16 16 C 1.45200 * 117.00101 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47310 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99818 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00223 * 180.02562 * 17 16 15 20 20 C 1.46498 * 120.00035 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47004 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00260 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00076 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46897 * 90.00233 * 25 23 21 27 27 H 1.48498 * 109.47684 * 210.00241 * 25 23 21 28 28 H 1.48497 * 109.47119 * 330.00781 * 25 23 21 29 29 H 1.09000 * 109.47229 * 300.00099 * 1 2 3 30 30 H 1.08996 * 109.47337 * 59.99799 * 1 2 3 31 31 H 1.08998 * 109.47433 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.02870 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97420 * 179.70233 * 5 4 3 34 34 H 1.08001 * 119.94556 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.97173 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47205 * 144.99604 * 9 8 7 37 37 H 1.08997 * 109.47010 * 24.99471 * 9 8 7 38 38 H 1.08996 * 109.47188 * 244.25244 * 11 10 9 39 39 H 1.08999 * 109.47070 * 4.24945 * 11 10 9 40 40 H 1.08997 * 109.47414 * 124.24898 * 11 10 9 41 41 H 1.08009 * 120.00151 * 353.78788 * 12 10 9 42 42 H 1.09000 * 109.47440 * 300.00706 * 16 15 13 43 43 H 1.09005 * 109.46614 * 60.00173 * 16 15 13 44 44 H 0.96999 * 119.99772 * 359.97438 * 19 17 16 45 45 H 1.08995 * 109.47468 * 299.99624 * 20 19 17 46 46 H 1.09005 * 109.47331 * 60.00002 * 20 19 17 47 47 H 0.97003 * 120.00189 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0014 6 6 3.3020 3.6758 -0.0066 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0221 0.0001 10 6 4.4188 -0.4701 -1.4146 11 6 3.3552 -1.3350 -2.0405 12 6 5.5039 -0.1411 -2.1113 13 6 5.7287 -0.7253 -3.4408 14 8 4.8798 -1.4346 -3.9442 15 8 6.8762 -0.4744 -4.1021 16 6 7.0302 -1.0850 -5.4104 17 6 8.3644 -0.6956 -5.9927 18 8 9.1122 0.0253 -5.3664 19 7 8.7268 -1.1483 -7.2093 20 6 10.0241 -0.7702 -7.7750 21 6 10.1838 -1.4039 -9.1330 22 1 9.3974 -2.0257 -9.5346 23 6 11.3334 -1.1889 -9.8631 24 7 12.2909 -0.4313 -9.3744 25 14 11.5312 -1.9738 -11.5467 26 1 10.9967 -1.0574 -12.5859 27 1 12.9703 -2.2316 -11.8068 28 1 10.7836 -3.2563 -11.5858 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2128 2.3204 0.0099 33 1 1.3340 4.5114 -0.0021 34 1 3.7923 4.6380 -0.0114 35 1 5.1344 2.5751 -0.0095 36 1 3.7489 -0.7402 0.5935 37 1 5.2340 0.2273 0.4302 38 1 3.7680 -2.3208 -2.2547 39 1 2.5160 -1.4343 -1.3520 40 1 3.0122 -0.8755 -2.9675 41 1 6.2173 0.5586 -1.7013 42 1 6.9790 -2.1695 -5.3135 43 1 6.2319 -0.7410 -6.0681 44 1 8.1288 -1.7251 -7.7099 45 1 10.0763 0.3143 -7.8714 46 1 10.8219 -1.1153 -7.1173 47 1 13.0999 -0.2803 -9.8879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730347032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:11 Heat of formation + Delta-G solvation = -145.358914 kcal Electronic energy + Delta-G solvation = -28800.694368 eV Core-core repulsion = 24527.418507 eV Total energy + Delta-G solvation = -4273.275861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69397 -41.19531 -40.39154 -38.45152 -37.90891 -36.52796 -36.18051 -34.42308 -32.79432 -31.08009 -30.93892 -29.29856 -28.50594 -28.10391 -27.57586 -24.74762 -23.52531 -22.98450 -22.27506 -21.65325 -19.97111 -19.07200 -18.85434 -18.75977 -17.76717 -17.64928 -17.19452 -17.10171 -16.73280 -16.70096 -16.53393 -16.17601 -15.86600 -15.37604 -15.21491 -14.84385 -14.76559 -14.53278 -14.34276 -14.15287 -13.98642 -13.82291 -13.65108 -13.43227 -13.14316 -12.94606 -12.86745 -12.74753 -12.71832 -12.62046 -12.23332 -12.12708 -11.96051 -11.86212 -11.77193 -11.50589 -11.27456 -10.90736 -10.82169 -10.30481 -9.94057 -9.79068 -9.07326 -8.29796 -6.46646 0.02670 0.39868 0.51456 1.34101 1.44932 1.46195 1.53907 1.57878 1.87400 2.34773 2.40017 2.60149 2.81804 3.05292 3.64137 3.75103 3.76424 3.82739 3.97387 4.02362 4.06282 4.14384 4.20824 4.30337 4.36996 4.43203 4.49319 4.57952 4.69251 4.75991 4.77489 4.81195 4.92524 5.04644 5.05677 5.08360 5.20482 5.21052 5.38932 5.41129 5.42808 5.50754 5.55625 5.62778 5.63139 5.81415 5.87700 6.46825 6.61560 6.66040 6.79100 7.19803 7.34947 8.82330 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.001587 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.820572 B =17636.830669 C =18189.733164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.122 3.878 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.166 4.166 7 C -0.084 4.084 8 C -0.130 4.130 9 C -0.040 4.040 10 C 0.013 3.987 11 C -0.120 4.120 12 C -0.225 4.225 13 C 0.491 3.509 14 O -0.527 6.527 15 O -0.349 6.349 16 C 0.062 3.938 17 C 0.499 3.501 18 O -0.584 6.584 19 N -0.698 5.698 20 C 0.266 3.734 21 C -0.558 4.558 22 H 0.086 0.914 23 C 0.004 3.996 24 N -0.930 5.930 25 Si 0.986 3.014 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.256 1.256 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.152 0.848 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.412 0.588 45 H -0.008 1.008 46 H -0.007 1.007 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.261 2.180 22.631 36.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.077 3.923 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.184 4.184 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.077 4.077 10 C 0.012 3.988 11 C -0.176 4.176 12 C -0.244 4.244 13 C 0.339 3.661 14 O -0.419 6.419 15 O -0.265 6.265 16 C -0.015 4.015 17 C 0.285 3.715 18 O -0.465 6.465 19 N -0.350 5.350 20 C 0.143 3.857 21 C -0.596 4.596 22 H 0.104 0.896 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.809 3.191 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.180 1.180 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.170 0.830 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.249 0.751 45 H 0.010 0.990 46 H 0.011 0.989 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.702 2.345 22.852 35.988 hybrid contribution 0.198 -0.127 -1.248 1.270 sum -27.504 2.218 21.605 35.045 Atomic orbital electron populations 1.23304 0.76915 1.05406 1.02022 1.86046 1.22896 1.26450 1.88398 1.19018 0.91910 0.84997 0.96419 1.21499 1.01049 0.92213 1.08771 1.21294 0.94963 0.97799 0.96464 1.21360 0.94353 0.99102 1.03619 1.21218 1.01024 0.91069 0.96919 1.19103 0.90698 0.95319 1.07942 1.19703 1.01526 0.95115 0.91327 1.22772 0.91626 0.89467 0.94894 1.21126 0.97132 0.98864 1.00446 1.21749 1.03186 1.07593 0.91865 1.22030 0.78500 0.78535 0.86986 1.90820 1.44355 1.37564 1.69157 1.86654 1.40342 1.68404 1.31148 1.22685 0.95141 1.00647 0.83031 1.20710 0.88365 0.80504 0.81899 1.90681 1.55446 1.38996 1.61375 1.46037 1.21036 1.50598 1.17306 1.18641 0.79728 0.94242 0.93043 1.21615 1.04302 1.32042 1.01623 0.89586 1.26063 0.94888 0.95363 1.03233 1.70135 1.07959 1.38567 1.40139 0.85133 0.77440 0.79028 0.77461 1.19629 1.20953 1.17950 0.91644 0.92238 0.86581 0.83753 0.83862 0.84329 0.83993 0.87888 0.87702 0.90704 0.89743 0.91634 0.83017 0.85936 0.86081 0.75124 0.98976 0.98942 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -4.44 7.71 -92.48 -0.71 -5.15 16 3 C 0.12 1.88 6.66 22.51 0.15 2.03 16 4 C -0.22 -2.82 9.04 22.36 0.20 -2.62 16 5 C -0.09 -1.08 10.04 22.26 0.22 -0.86 16 6 C -0.17 -2.23 10.04 22.28 0.22 -2.01 16 7 C -0.08 -1.23 9.68 22.25 0.22 -1.02 16 8 C -0.13 -2.04 5.13 -19.77 -0.10 -2.14 16 9 C -0.04 -0.56 5.16 29.10 0.15 -0.41 16 10 C 0.01 0.25 5.35 -17.60 -0.09 0.15 16 11 C -0.12 -2.36 8.33 71.24 0.59 -1.76 16 12 C -0.23 -5.05 9.73 23.40 0.23 -4.82 16 13 C 0.49 14.15 7.87 70.10 0.55 14.70 16 14 O -0.53 -15.85 12.90 19.73 0.25 -15.59 16 15 O -0.35 -11.76 9.77 -50.71 -0.50 -12.25 16 16 C 0.06 1.92 5.96 71.23 0.42 2.35 16 17 C 0.50 20.93 7.91 87.66 0.69 21.62 16 18 O -0.58 -30.52 16.50 15.74 0.26 -30.26 16 19 N -0.70 -29.73 5.55 -466.79 -2.59 -32.32 16 20 C 0.27 14.62 5.43 85.64 0.46 15.09 16 21 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 22 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 23 C 0.00 0.24 5.46 84.65 0.46 0.70 16 24 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 25 Si 0.99 42.23 29.54 68.60 2.03 44.26 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 29 H 0.06 0.31 7.65 -2.39 -0.02 0.29 16 30 H 0.06 0.37 7.67 -2.39 -0.02 0.35 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.14 1.24 6.30 -2.91 -0.02 1.22 16 33 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.10 1.31 7.70 -2.39 -0.02 1.29 16 37 H 0.10 1.15 7.94 -2.39 -0.02 1.13 16 38 H 0.07 1.61 7.28 -2.39 -0.02 1.59 16 39 H 0.08 1.39 5.99 -2.39 -0.01 1.37 16 40 H 0.07 1.52 7.18 -2.39 -0.02 1.50 16 41 H 0.15 2.94 8.05 -2.91 -0.02 2.92 16 42 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.41 14.18 8.32 -92.71 -0.77 13.40 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H -0.01 -0.46 8.14 -2.38 -0.02 -0.47 16 47 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.77 402.31 4.99 -72.78 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.22 Total: 22.01 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.74 Total: 12.21 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -2.30 Total: -88.01 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -0.69 Total: -63.26 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -77.77 4.99 -72.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730347032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.574 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds