Wall clock time and date at job start Wed Apr 1 2020 04:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00595 * 2 1 4 4 C 1.38754 * 120.05436 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94469 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05541 * 359.93304 * 5 4 3 7 7 C 1.38243 * 120.11252 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05641 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.03032 * 179.70420 * 8 7 6 10 10 C 1.50699 * 109.47054 * 265.00141 * 9 8 7 11 11 C 1.50699 * 119.99634 * 268.99188 * 10 9 8 12 12 C 1.33083 * 120.00246 * 88.99296 * 10 9 8 13 13 C 1.46949 * 120.00006 * 2.91371 * 12 10 9 14 14 O 1.21531 * 120.00063 * 6.21564 * 13 12 10 15 15 O 1.34799 * 119.99812 * 186.22043 * 13 12 10 16 16 C 1.45205 * 116.99610 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.46659 * 179.97438 * 16 15 13 18 18 O 1.21278 * 120.00145 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00155 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.47416 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99814 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99988 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99846 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00218 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47442 * 89.99918 * 25 23 21 27 27 H 1.48499 * 109.47228 * 209.99999 * 25 23 21 28 28 H 1.48508 * 109.47087 * 329.99905 * 25 23 21 29 29 H 1.09005 * 109.47262 * 300.00863 * 1 2 3 30 30 H 1.09005 * 109.47010 * 60.00194 * 1 2 3 31 31 H 1.08999 * 109.47451 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.02835 * 0.04446 * 4 3 2 33 33 H 1.08000 * 119.96693 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.94776 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.97228 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46627 * 24.99552 * 9 8 7 37 37 H 1.08999 * 109.47564 * 144.99631 * 9 8 7 38 38 H 1.08995 * 109.46950 * 90.00273 * 11 10 9 39 39 H 1.08999 * 109.46922 * 210.00063 * 11 10 9 40 40 H 1.08999 * 109.46998 * 329.99966 * 11 10 9 41 41 H 1.08003 * 119.99740 * 182.91486 * 12 10 9 42 42 H 1.08998 * 109.46964 * 299.99434 * 16 15 13 43 43 H 1.08992 * 109.47436 * 60.00375 * 16 15 13 44 44 H 0.97010 * 120.00328 * 0.02562 * 19 17 16 45 45 H 1.09002 * 109.47196 * 300.00417 * 20 19 17 46 46 H 1.09002 * 109.47063 * 60.00528 * 20 19 17 47 47 H 0.97006 * 119.99956 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 0.0003 7 6 4.0561 2.5169 0.0017 8 6 3.4312 1.2846 0.0012 9 6 4.2536 0.0219 -0.0040 10 6 4.4196 -0.4637 -1.4209 11 6 3.4260 -1.4340 -2.0061 12 6 5.4434 -0.0357 -2.1555 13 6 6.4476 0.8600 -1.5650 14 8 6.4075 1.1198 -0.3785 15 8 7.4133 1.3937 -2.3395 16 6 8.3710 2.2700 -1.6888 17 6 9.3676 2.7670 -2.7042 18 8 9.2791 2.4175 -3.8622 19 7 10.3565 3.6007 -2.3256 20 6 11.3250 4.0843 -3.3127 21 6 12.3190 4.9938 -2.6374 22 1 12.2377 5.1913 -1.5788 23 6 13.3328 5.5727 -3.3709 24 7 14.2005 6.3659 -2.7816 25 14 13.4738 5.2304 -5.2019 26 1 12.6882 6.2399 -5.9562 27 1 14.8993 5.3057 -5.6112 28 1 12.9460 3.8733 -5.4938 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2129 2.3204 -0.0002 33 1 1.3342 4.5113 -0.0019 34 1 3.7925 4.6378 0.0003 35 1 5.1346 2.5749 0.0024 36 1 5.2338 0.2250 0.4276 37 1 3.7486 -0.7433 0.5855 38 1 2.6166 -0.8816 -2.4833 39 1 3.9233 -2.0614 -2.7458 40 1 3.0195 -2.0607 -1.2123 41 1 5.5363 -0.3467 -3.1856 42 1 7.8466 3.1181 -1.2485 43 1 8.8937 1.7199 -0.9064 44 1 10.4271 3.8806 -1.3994 45 1 11.8495 3.2363 -3.7528 46 1 10.8023 4.6342 -4.0953 47 1 14.9136 6.7735 -3.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730347034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:15 Heat of formation + Delta-G solvation = -106.887913 kcal Electronic energy + Delta-G solvation = -29621.668654 eV Core-core repulsion = 25350.061020 eV Total energy + Delta-G solvation = -4271.607633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94192 -40.29565 -38.93955 -37.76095 -36.90955 -35.52097 -34.36351 -32.43156 -32.11808 -30.33989 -29.80226 -28.47082 -27.90558 -27.03718 -26.68467 -22.82967 -22.32354 -22.01677 -21.46566 -20.12956 -19.16854 -18.32540 -17.82669 -17.37789 -16.67336 -16.47908 -16.43809 -16.11701 -15.96053 -15.49519 -15.07876 -14.83453 -14.61173 -14.48786 -14.14099 -13.94684 -13.81841 -13.38883 -13.19664 -13.06614 -12.92541 -12.81240 -12.52946 -12.35932 -12.32141 -12.16082 -11.98952 -11.87652 -11.54089 -11.42394 -11.12954 -11.06219 -10.80560 -10.63802 -9.99878 -9.91664 -9.54031 -9.40685 -9.31200 -9.04248 -8.81557 -8.38586 -8.26074 -6.24042 -4.27033 0.85169 1.15726 1.22186 2.46205 2.80246 2.94805 3.05197 3.25728 3.32574 3.40600 3.53085 3.91628 4.31245 4.47758 4.51682 4.61708 4.64921 4.73245 4.74365 4.88026 4.92733 5.03331 5.10126 5.10738 5.13754 5.17754 5.18925 5.21589 5.24592 5.31590 5.43430 5.50705 5.61371 5.78367 5.83538 6.03679 6.05225 6.16119 6.27156 6.40582 6.51442 6.70525 6.75727 7.01447 7.09276 7.10671 7.32235 7.72184 8.05738 8.41859 8.68828 8.80778 9.35155 10.87683 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.001951 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.620947 B =14344.645169 C =15127.537033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.125 3.875 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.157 4.157 7 C -0.075 4.075 8 C -0.098 4.098 9 C -0.091 4.091 10 C 0.000 4.000 11 C -0.122 4.122 12 C -0.211 4.211 13 C 0.501 3.499 14 O -0.509 6.509 15 O -0.325 6.325 16 C 0.049 3.951 17 C 0.501 3.499 18 O -0.536 6.536 19 N -0.700 5.700 20 C 0.222 3.778 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.891 5.891 25 Si 0.877 3.123 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.260 1.260 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.141 0.859 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.399 0.601 45 H 0.028 0.972 46 H 0.023 0.977 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.674 -13.713 7.413 33.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.175 4.175 7 C -0.093 4.093 8 C -0.099 4.099 9 C -0.127 4.127 10 C -0.001 4.001 11 C -0.178 4.178 12 C -0.230 4.230 13 C 0.349 3.651 14 O -0.403 6.403 15 O -0.239 6.239 16 C -0.028 4.028 17 C 0.285 3.715 18 O -0.414 6.414 19 N -0.350 5.350 20 C 0.100 3.900 21 C -0.584 4.584 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.528 5.528 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.185 1.185 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.159 0.841 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.233 0.767 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.441 -13.938 6.851 33.287 hybrid contribution -0.091 0.461 -0.403 0.619 sum -29.532 -13.477 6.449 33.096 Atomic orbital electron populations 1.23038 0.78752 1.03791 1.01264 1.86067 1.20941 1.26822 1.88742 1.18887 0.91789 0.84168 0.97142 1.21171 0.99760 0.92438 1.09702 1.20947 0.94767 0.96910 0.97685 1.21172 0.93896 0.98753 1.03726 1.21498 1.01385 0.90763 0.95661 1.18947 0.89714 0.95224 1.06011 1.20521 1.04429 0.94352 0.93354 1.22568 0.91750 0.90829 0.94951 1.20983 0.97790 0.97607 1.01454 1.21662 0.96047 1.03472 1.01849 1.21629 0.80370 0.78391 0.84675 1.90524 1.74036 1.59044 1.16657 1.86680 1.38026 1.57935 1.41291 1.22804 0.90204 0.94531 0.95286 1.19951 0.82325 0.80314 0.88953 1.90702 1.73850 1.57678 1.19153 1.46063 1.28587 1.46433 1.13956 1.19551 0.87095 0.94876 0.88446 1.21069 1.11218 1.28408 0.97674 0.90114 1.24788 0.94876 0.94109 0.98807 1.69878 1.15800 1.30433 1.36657 0.86818 0.77690 0.80046 0.85156 1.19791 1.20844 1.18462 0.92810 0.92781 0.88312 0.85713 0.85986 0.85821 0.83777 0.84167 0.90310 0.90189 0.90954 0.90408 0.84129 0.88351 0.88238 0.76722 0.95441 0.95895 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.60 9.40 -19.41 -0.18 -2.78 16 3 C 0.13 1.24 6.66 -39.22 -0.26 0.98 16 4 C -0.21 -1.88 9.04 -39.43 -0.36 -2.24 16 5 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 6 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 7 C -0.08 -0.87 9.30 -39.61 -0.37 -1.24 16 8 C -0.10 -1.08 5.13 -104.47 -0.54 -1.62 16 9 C -0.09 -0.93 4.73 -29.04 -0.14 -1.07 16 10 C 0.00 0.00 5.35 -101.14 -0.54 -0.54 16 11 C -0.12 -0.84 9.81 36.01 0.35 -0.49 16 12 C -0.21 -2.30 9.75 -37.85 -0.37 -2.67 16 13 C 0.50 6.58 7.72 34.26 0.26 6.85 16 14 O -0.51 -6.71 9.70 -19.29 -0.19 -6.90 16 15 O -0.32 -5.01 9.77 -47.45 -0.46 -5.47 16 16 C 0.05 0.71 5.96 36.01 0.21 0.93 16 17 C 0.50 9.58 7.91 -10.99 -0.09 9.50 16 18 O -0.54 -12.50 16.50 -14.10 -0.23 -12.73 16 19 N -0.70 -13.87 5.55 -61.47 -0.34 -14.21 16 20 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 21 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 22 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 23 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 25 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 29 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.76 5.27 -52.48 -0.28 1.48 16 36 H 0.14 1.64 4.66 -54.52 -0.25 1.38 16 37 H 0.08 0.74 7.58 -51.93 -0.39 0.35 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 41 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.40 6.78 8.32 -40.82 -0.34 6.44 16 45 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 46 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -33.85 395.34 -7.96 -41.81 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.53 Total: 4.51 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.09 Total: -1.34 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.43 Total: -39.65 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.07 Total: -27.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.85 -7.96 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730347034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.078 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds