Wall clock time and date at job start Wed Apr 1 2020 04:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00595 * 2 1 4 4 C 1.38754 * 120.05436 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94469 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05541 * 359.93304 * 5 4 3 7 7 C 1.38243 * 120.11252 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05641 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.03032 * 179.70420 * 8 7 6 10 10 C 1.50699 * 109.47054 * 265.00141 * 9 8 7 11 11 C 1.50699 * 119.99634 * 268.99188 * 10 9 8 12 12 C 1.33083 * 120.00246 * 88.99296 * 10 9 8 13 13 C 1.46949 * 120.00006 * 2.91371 * 12 10 9 14 14 O 1.21531 * 120.00063 * 6.21564 * 13 12 10 15 15 O 1.34799 * 119.99812 * 186.22043 * 13 12 10 16 16 C 1.45205 * 116.99610 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.46659 * 179.97438 * 16 15 13 18 18 O 1.21278 * 120.00145 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00155 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.47416 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99814 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99988 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99846 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00218 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47442 * 89.99918 * 25 23 21 27 27 H 1.48499 * 109.47228 * 209.99999 * 25 23 21 28 28 H 1.48508 * 109.47087 * 329.99905 * 25 23 21 29 29 H 1.09005 * 109.47262 * 300.00863 * 1 2 3 30 30 H 1.09005 * 109.47010 * 60.00194 * 1 2 3 31 31 H 1.08999 * 109.47451 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.02835 * 0.04446 * 4 3 2 33 33 H 1.08000 * 119.96693 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.94776 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.97228 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46627 * 24.99552 * 9 8 7 37 37 H 1.08999 * 109.47564 * 144.99631 * 9 8 7 38 38 H 1.08995 * 109.46950 * 90.00273 * 11 10 9 39 39 H 1.08999 * 109.46922 * 210.00063 * 11 10 9 40 40 H 1.08999 * 109.46998 * 329.99966 * 11 10 9 41 41 H 1.08003 * 119.99740 * 182.91486 * 12 10 9 42 42 H 1.08998 * 109.46964 * 299.99434 * 16 15 13 43 43 H 1.08992 * 109.47436 * 60.00375 * 16 15 13 44 44 H 0.97010 * 120.00328 * 0.02562 * 19 17 16 45 45 H 1.09002 * 109.47196 * 300.00417 * 20 19 17 46 46 H 1.09002 * 109.47063 * 60.00528 * 20 19 17 47 47 H 0.97006 * 119.99956 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 0.0003 7 6 4.0561 2.5169 0.0017 8 6 3.4312 1.2846 0.0012 9 6 4.2536 0.0219 -0.0040 10 6 4.4196 -0.4637 -1.4209 11 6 3.4260 -1.4340 -2.0061 12 6 5.4434 -0.0357 -2.1555 13 6 6.4476 0.8600 -1.5650 14 8 6.4075 1.1198 -0.3785 15 8 7.4133 1.3937 -2.3395 16 6 8.3710 2.2700 -1.6888 17 6 9.3676 2.7670 -2.7042 18 8 9.2791 2.4175 -3.8622 19 7 10.3565 3.6007 -2.3256 20 6 11.3250 4.0843 -3.3127 21 6 12.3190 4.9938 -2.6374 22 1 12.2377 5.1913 -1.5788 23 6 13.3328 5.5727 -3.3709 24 7 14.2005 6.3659 -2.7816 25 14 13.4738 5.2304 -5.2019 26 1 12.6882 6.2399 -5.9562 27 1 14.8993 5.3057 -5.6112 28 1 12.9460 3.8733 -5.4938 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2129 2.3204 -0.0002 33 1 1.3342 4.5113 -0.0019 34 1 3.7925 4.6378 0.0003 35 1 5.1346 2.5749 0.0024 36 1 5.2338 0.2250 0.4276 37 1 3.7486 -0.7433 0.5855 38 1 2.6166 -0.8816 -2.4833 39 1 3.9233 -2.0614 -2.7458 40 1 3.0195 -2.0607 -1.2123 41 1 5.5363 -0.3467 -3.1856 42 1 7.8466 3.1181 -1.2485 43 1 8.8937 1.7199 -0.9064 44 1 10.4271 3.8806 -1.3994 45 1 11.8495 3.2363 -3.7528 46 1 10.8023 4.6342 -4.0953 47 1 14.9136 6.7735 -3.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730347034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:14 Heat of formation + Delta-G solvation = -127.489616 kcal Electronic energy + Delta-G solvation = -29622.562011 eV Core-core repulsion = 25350.061020 eV Total energy + Delta-G solvation = -4272.500990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87384 -41.11652 -40.42938 -38.50957 -37.84374 -36.41319 -36.18619 -34.46667 -32.84783 -31.24604 -31.01880 -29.62727 -28.48849 -28.21756 -27.49122 -24.31170 -23.34526 -22.95758 -22.36245 -21.72765 -20.10806 -19.22820 -19.00870 -18.74957 -17.90561 -17.73866 -17.23275 -17.07999 -16.83476 -16.69735 -16.36161 -16.21170 -15.83092 -15.36026 -15.19635 -14.91799 -14.82893 -14.45080 -14.43046 -14.29274 -13.99042 -13.78151 -13.65510 -13.54518 -13.44444 -13.09549 -12.83854 -12.80425 -12.70995 -12.51932 -12.29584 -11.96647 -11.93874 -11.86544 -11.67433 -11.65252 -11.01790 -10.92666 -10.76953 -10.18383 -10.04572 -9.78584 -9.07977 -8.40302 -6.47857 0.02420 0.40449 0.49114 1.31075 1.33673 1.37853 1.47862 1.51516 1.89292 2.28034 2.41321 2.53769 2.79725 2.94977 3.62342 3.74189 3.83358 3.88599 3.94857 4.05008 4.07849 4.15214 4.22963 4.32105 4.44325 4.46949 4.48846 4.55950 4.70417 4.74391 4.78109 4.79237 4.80806 4.99372 4.99809 5.00519 5.07075 5.22775 5.28173 5.35526 5.39652 5.43353 5.50895 5.63797 5.74401 5.91984 6.05772 6.47906 6.51769 6.66857 6.77080 7.11497 7.27251 8.74173 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.001951 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.620947 B =14344.645169 C =15127.537033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.087 4.087 6 C -0.173 4.173 7 C -0.095 4.095 8 C -0.116 4.116 9 C -0.089 4.089 10 C 0.016 3.984 11 C -0.119 4.119 12 C -0.232 4.232 13 C 0.497 3.503 14 O -0.514 6.514 15 O -0.347 6.347 16 C 0.059 3.941 17 C 0.504 3.496 18 O -0.580 6.580 19 N -0.697 5.697 20 C 0.232 3.768 21 C -0.548 4.548 22 H 0.062 0.938 23 C 0.027 3.973 24 N -0.930 5.930 25 Si 0.937 3.063 26 H -0.265 1.265 27 H -0.273 1.273 28 H -0.260 1.260 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.413 0.587 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.364 -14.871 7.228 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.232 4.232 5 C -0.105 4.105 6 C -0.191 4.191 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.015 3.985 11 C -0.175 4.175 12 C -0.251 4.251 13 C 0.347 3.653 14 O -0.407 6.407 15 O -0.263 6.263 16 C -0.018 4.018 17 C 0.290 3.710 18 O -0.460 6.460 19 N -0.348 5.348 20 C 0.109 3.891 21 C -0.586 4.586 22 H 0.080 0.920 23 C -0.174 4.174 24 N -0.568 5.568 25 Si 0.760 3.240 26 H -0.189 1.189 27 H -0.198 1.198 28 H -0.184 1.184 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.249 0.751 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -32.156 -15.102 6.710 36.154 hybrid contribution 0.606 0.787 -0.219 1.017 sum -31.550 -14.315 6.492 35.249 Atomic orbital electron populations 1.23329 0.76824 1.05525 1.02013 1.86053 1.22898 1.26045 1.88444 1.18959 0.91553 0.85162 0.96645 1.21499 1.01088 0.91945 1.08677 1.21259 0.94410 0.98125 0.96724 1.21354 0.94772 0.98710 1.04266 1.21486 1.00944 0.91729 0.97103 1.19027 0.90611 0.95029 1.06955 1.20449 1.03567 0.94599 0.93886 1.22833 0.91348 0.89967 0.94324 1.21047 0.97216 0.97202 1.02080 1.21752 0.96389 1.04262 1.02670 1.22048 0.80164 0.78448 0.84665 1.90547 1.74058 1.59329 1.16772 1.86665 1.38741 1.58440 1.42440 1.22699 0.89652 0.95811 0.93629 1.20632 0.82195 0.79007 0.89179 1.90676 1.74904 1.59052 1.21353 1.45858 1.28249 1.46730 1.13990 1.19173 0.87242 0.93799 0.88922 1.21271 1.11764 1.28510 0.97075 0.91990 1.25590 0.94661 0.93970 1.03146 1.69979 1.16681 1.31688 1.38471 0.85868 0.78157 0.79910 0.80034 1.18943 1.19826 1.18398 0.92094 0.91919 0.86226 0.83204 0.83681 0.85185 0.85194 0.85831 0.89521 0.89629 0.89508 0.89322 0.83099 0.85942 0.85827 0.75065 0.96543 0.96645 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.32 -4.60 9.40 -92.38 -0.87 -5.46 16 3 C 0.12 2.22 6.66 22.51 0.15 2.37 16 4 C -0.21 -3.32 9.04 22.37 0.20 -3.12 16 5 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.17 -3.48 10.04 22.28 0.22 -3.26 16 7 C -0.09 -2.19 9.30 22.25 0.21 -1.99 16 8 C -0.12 -2.47 5.13 -19.77 -0.10 -2.57 16 9 C -0.09 -1.77 4.73 29.10 0.14 -1.64 16 10 C 0.02 0.29 5.35 -17.60 -0.09 0.19 16 11 C -0.12 -1.37 9.81 71.24 0.70 -0.67 16 12 C -0.23 -4.90 9.75 23.40 0.23 -4.67 16 13 C 0.50 12.99 7.72 70.10 0.54 13.53 16 14 O -0.51 -13.54 9.70 19.73 0.19 -13.35 16 15 O -0.35 -10.62 9.77 -50.72 -0.50 -11.12 16 16 C 0.06 1.65 5.96 71.24 0.42 2.08 16 17 C 0.50 19.12 7.91 87.66 0.69 19.81 16 18 O -0.58 -27.17 16.50 15.78 0.26 -26.91 16 19 N -0.70 -27.47 5.55 -466.78 -2.59 -30.06 16 20 C 0.23 11.29 4.50 85.63 0.38 11.67 16 21 C -0.55 -30.00 9.83 25.60 0.25 -29.75 16 22 H 0.06 3.54 7.84 -2.91 -0.02 3.52 16 23 C 0.03 1.51 5.47 84.65 0.46 1.97 16 24 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 25 Si 0.94 43.83 27.47 68.60 1.88 45.72 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 29 H 0.06 0.33 7.66 -2.38 -0.02 0.31 16 30 H 0.06 0.32 7.66 -2.38 -0.02 0.30 16 31 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.15 1.47 6.30 -2.91 -0.02 1.45 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.13 3.28 5.27 -2.91 -0.02 3.27 16 36 H 0.12 2.91 4.66 -43.43 -0.20 2.71 16 37 H 0.09 1.54 7.58 -2.39 -0.02 1.52 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 40 H 0.09 0.85 8.03 -2.39 -0.02 0.84 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.41 13.87 8.32 -92.70 -0.77 13.10 16 45 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 46 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 47 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -73.58 395.34 4.42 -69.16 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.01 Total: 23.01 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.75 Total: 3.97 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.29 Total: -85.01 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.91 Total: -56.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -73.58 4.42 -69.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730347034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.327 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds