Wall clock time and date at job start Wed Apr 1 2020 04:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47273 * 2 1 4 4 H 1.09002 * 109.47155 * 304.99836 * 3 2 1 5 5 C 1.53001 * 109.47111 * 184.99906 * 3 2 1 6 6 O 1.42902 * 109.47164 * 64.99951 * 3 2 1 7 7 C 1.35683 * 117.00056 * 211.59691 * 6 3 2 8 8 C 1.38611 * 120.15803 * 352.50708 * 7 6 3 9 9 C 1.38129 * 120.11032 * 180.25365 * 8 7 6 10 10 C 1.38589 * 120.43632 * 359.45238 * 9 8 7 11 11 C 1.37740 * 120.32302 * 0.54908 * 10 9 8 12 12 C 1.39948 * 119.87873 * 359.72576 * 11 10 9 13 13 C 1.46904 * 120.21476 * 180.02562 * 12 11 10 14 14 C 1.35112 * 120.00040 * 46.70745 * 13 12 11 15 15 C 1.41767 * 119.99894 * 12.35766 * 14 13 12 16 16 O 1.21649 * 120.00035 * 7.27029 * 15 14 13 17 17 O 1.34929 * 120.00131 * 187.27044 * 15 14 13 18 18 C 1.42901 * 117.00241 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47262 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99782 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00259 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99985 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00288 * 179.97438 * 22 21 19 25 25 N 1.31404 * 119.99970 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99891 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47024 * 89.99986 * 26 24 22 28 28 H 1.48504 * 109.46821 * 209.99676 * 26 24 22 29 29 H 1.48498 * 109.47054 * 329.99862 * 26 24 22 30 30 H 1.09005 * 109.46520 * 60.00350 * 1 2 3 31 31 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47033 * 300.00413 * 1 2 3 33 33 H 1.09006 * 109.47103 * 239.99442 * 2 1 3 34 34 H 1.09004 * 109.46776 * 120.00136 * 2 1 3 35 35 H 1.09008 * 109.47230 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47055 * 299.99992 * 5 3 2 37 37 H 1.08991 * 109.47604 * 60.00122 * 5 3 2 38 38 H 1.07997 * 119.95340 * 359.97438 * 8 7 6 39 39 H 1.07996 * 119.78633 * 179.72004 * 9 8 7 40 40 H 1.08000 * 119.83853 * 180.30395 * 10 9 8 41 41 H 1.07996 * 120.06060 * 179.71201 * 11 10 9 42 42 H 1.07997 * 119.99712 * 226.70753 * 13 12 11 43 43 H 1.07996 * 120.00552 * 192.35922 * 14 13 12 44 44 H 1.08998 * 109.46867 * 299.99680 * 18 17 15 45 45 H 1.09004 * 109.47138 * 59.99596 * 18 17 15 46 46 H 0.97003 * 120.00223 * 359.97438 * 21 19 18 47 47 H 0.97003 * 120.00418 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4182 3.4150 1.1686 8 6 1.6875 4.1272 0.0103 9 6 1.4438 5.4859 -0.0403 10 6 0.9188 6.1464 1.0592 11 6 0.6446 5.4564 2.2193 12 6 0.8916 4.0806 2.2872 13 6 0.6013 3.3373 3.5206 14 6 -0.5777 3.5164 4.1557 15 6 -1.6328 4.2087 3.5097 16 8 -1.5261 4.5253 2.3400 17 8 -2.7553 4.5164 4.1922 18 6 -3.7779 5.2142 3.4784 19 6 -4.9462 5.4691 4.3955 20 8 -4.9071 5.0900 5.5471 21 7 -6.0343 6.1182 3.9362 22 6 -7.0969 6.3506 4.7707 23 1 -7.0622 6.0131 5.7961 24 6 -8.2186 7.0203 4.2973 25 7 -8.2607 7.4314 3.0500 26 14 -9.6668 7.3363 5.4343 27 1 -9.4831 8.6412 6.1188 28 1 -10.9217 7.3659 4.6408 29 1 -9.7467 6.2530 6.4468 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9283 2.4719 -0.1252 36 1 3.9994 0.9051 0.7161 37 1 3.8533 0.9569 -1.0570 38 1 2.0926 3.6198 -0.8527 39 1 1.6598 6.0364 -0.9439 40 1 0.7275 7.2080 1.0074 41 1 0.2399 5.9762 3.0751 42 1 1.3304 2.6477 3.9198 43 1 -0.7165 3.1322 5.1554 44 1 -3.3850 6.1646 3.1172 45 1 -4.1060 4.6113 2.6316 46 1 -6.0654 6.4217 3.0154 47 1 -9.0439 7.8986 2.7193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731249644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:02 Heat of formation + Delta-G solvation = -112.421396 kcal Electronic energy + Delta-G solvation = -29869.012588 eV Core-core repulsion = 25597.165005 eV Total energy + Delta-G solvation = -4271.847583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82973 -40.15667 -38.33977 -37.79963 -36.17938 -34.54147 -33.96581 -33.90765 -31.34082 -30.62689 -30.24945 -29.66064 -28.22881 -25.11544 -24.41498 -24.12436 -22.97964 -22.01891 -20.86239 -19.57890 -19.45022 -18.59626 -18.03906 -17.57337 -16.43069 -16.32717 -16.05920 -15.74685 -15.50145 -15.20854 -14.93508 -14.55576 -14.34009 -14.09669 -13.93124 -13.89906 -13.83650 -13.48029 -13.28160 -13.18301 -12.71122 -12.61637 -12.23274 -12.15736 -12.00756 -11.88546 -11.62854 -11.59008 -11.41880 -11.32183 -11.10704 -10.94275 -10.83329 -10.41676 -10.37410 -10.25923 -10.22256 -9.90031 -9.56638 -8.56596 -8.45588 -8.09048 -8.04255 -6.46466 -3.88208 0.51834 1.40270 1.61709 2.91219 3.04651 3.15132 3.17875 3.25545 3.32752 3.72251 3.79399 4.16448 4.27133 4.49498 4.49790 4.60349 4.75018 4.81271 4.86678 4.93919 5.03829 5.16476 5.17464 5.19133 5.19541 5.28972 5.34221 5.37737 5.47765 5.57471 5.61160 5.62991 5.70535 5.78245 5.78328 5.79311 5.88876 6.02330 6.05013 6.13473 6.23884 6.35538 6.48343 6.66518 6.78674 7.26252 7.51069 7.94866 8.09383 8.53466 9.11042 9.44066 9.94548 10.70899 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002050 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.282442 B =13655.411374 C =13972.650241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.176 4.176 6 O -0.305 6.305 7 C 0.152 3.848 8 C -0.220 4.220 9 C -0.068 4.068 10 C -0.162 4.162 11 C -0.015 4.015 12 C -0.106 4.106 13 C 0.013 3.987 14 C -0.201 4.201 15 C 0.487 3.513 16 O -0.504 6.504 17 O -0.321 6.321 18 C 0.061 3.939 19 C 0.440 3.560 20 O -0.576 6.576 21 N -0.554 5.554 22 C -0.301 4.301 23 H 0.106 0.894 24 C 0.024 3.976 25 N -0.898 5.898 26 Si 0.934 3.066 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.268 1.268 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.395 0.605 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.617 -9.912 -9.713 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.234 4.234 6 O -0.219 6.219 7 C 0.107 3.893 8 C -0.238 4.238 9 C -0.086 4.086 10 C -0.180 4.180 11 C -0.033 4.033 12 C -0.106 4.106 13 C -0.005 4.005 14 C -0.220 4.220 15 C 0.335 3.665 16 O -0.396 6.396 17 O -0.236 6.236 18 C -0.017 4.017 19 C 0.225 3.775 20 O -0.460 6.460 21 N -0.192 5.192 22 C -0.430 4.430 23 H 0.123 0.877 24 C -0.178 4.178 25 N -0.539 5.539 26 Si 0.760 3.240 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.193 1.193 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.228 0.772 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.461 -10.103 -9.217 28.024 hybrid contribution -0.893 0.528 -0.520 1.160 sum 23.568 -9.575 -9.736 27.238 Atomic orbital electron populations 1.21768 0.94877 1.01985 1.02672 1.21661 0.97044 0.93913 1.03069 1.22560 0.94990 0.94018 0.86198 0.90597 1.22325 0.95088 1.03059 1.02907 1.86029 1.82690 1.18598 1.34553 1.18951 0.93956 0.82653 0.93752 1.21075 1.09253 0.95580 0.97925 1.20980 0.96056 0.93558 0.98020 1.20884 1.03300 1.00303 0.93509 1.20963 0.92557 0.91851 0.97963 1.18205 1.05504 0.93562 0.93363 1.22329 0.95074 0.92107 0.91022 1.21413 0.92581 1.05666 1.02371 1.20216 0.83090 0.77540 0.85701 1.90948 1.80545 1.50947 1.17112 1.86269 1.25510 1.68530 1.43297 1.22283 0.87461 0.97053 0.94893 1.19381 0.84279 0.85223 0.88664 1.90557 1.81522 1.55370 1.18585 1.41710 1.13827 1.49700 1.13935 1.19725 0.92990 1.34442 0.95881 0.87655 1.25309 0.99225 0.96704 0.96607 1.69614 1.30997 1.38744 1.14529 0.85802 0.79686 0.78997 0.79485 1.20286 1.20845 1.19293 0.92800 0.92369 0.91803 0.90199 0.90771 0.91853 0.91389 0.91051 0.85528 0.86042 0.85890 0.86105 0.83887 0.83563 0.90006 0.90023 0.77183 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.81 37.16 0.36 -0.94 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.61 2.19 -26.73 -0.06 0.55 16 4 H 0.08 0.59 5.99 -51.93 -0.31 0.28 16 5 C -0.18 -1.06 9.34 37.16 0.35 -0.71 16 6 O -0.30 -3.22 8.77 -18.75 -0.16 -3.39 16 7 C 0.15 1.79 6.68 -38.63 -0.26 1.53 16 8 C -0.22 -2.30 8.56 -39.48 -0.34 -2.64 16 9 C -0.07 -0.71 10.03 -39.49 -0.40 -1.10 16 10 C -0.16 -1.87 10.02 -39.63 -0.40 -2.27 16 11 C -0.02 -0.20 6.82 -39.12 -0.27 -0.46 16 12 C -0.11 -1.33 4.33 -104.93 -0.45 -1.79 16 13 C 0.01 0.15 9.33 -37.19 -0.35 -0.20 16 14 C -0.20 -2.59 9.85 -39.35 -0.39 -2.98 16 15 C 0.49 8.07 6.86 32.08 0.22 8.29 16 16 O -0.50 -8.85 12.16 -19.38 -0.24 -9.09 16 17 O -0.32 -6.29 9.64 -47.88 -0.46 -6.75 16 18 C 0.06 1.22 5.85 36.00 0.21 1.43 16 19 C 0.44 10.94 7.86 -10.99 -0.09 10.86 16 20 O -0.58 -16.47 16.08 -14.37 -0.23 -16.70 16 21 N -0.55 -14.37 5.29 -10.96 -0.06 -14.43 16 22 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 23 H 0.11 3.09 7.16 -52.48 -0.38 2.71 16 24 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 25 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 26 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.41 7.54 -51.92 -0.39 0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.13 1.05 5.65 -52.49 -0.30 0.75 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.55 7.39 -52.49 -0.39 1.16 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 45 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 46 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -33.71 399.28 -8.37 -42.08 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.70 Total: 9.46 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.24 Total: 0.55 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.67 Total: -38.14 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.09 Total: -35.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.71 -8.37 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731249644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.340 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds