Wall clock time and date at job start Wed Apr 1 2020 04:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47273 * 2 1 4 4 H 1.09002 * 109.47155 * 304.99836 * 3 2 1 5 5 C 1.53001 * 109.47111 * 184.99906 * 3 2 1 6 6 O 1.42902 * 109.47164 * 64.99951 * 3 2 1 7 7 C 1.35683 * 117.00056 * 211.59691 * 6 3 2 8 8 C 1.38611 * 120.15803 * 352.50708 * 7 6 3 9 9 C 1.38129 * 120.11032 * 180.25365 * 8 7 6 10 10 C 1.38589 * 120.43632 * 359.45238 * 9 8 7 11 11 C 1.37740 * 120.32302 * 0.54908 * 10 9 8 12 12 C 1.39948 * 119.87873 * 359.72576 * 11 10 9 13 13 C 1.46904 * 120.21476 * 180.02562 * 12 11 10 14 14 C 1.35112 * 120.00040 * 46.70745 * 13 12 11 15 15 C 1.41767 * 119.99894 * 12.35766 * 14 13 12 16 16 O 1.21649 * 120.00035 * 7.27029 * 15 14 13 17 17 O 1.34929 * 120.00131 * 187.27044 * 15 14 13 18 18 C 1.42901 * 117.00241 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47262 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99782 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00259 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99985 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00288 * 179.97438 * 22 21 19 25 25 N 1.31404 * 119.99970 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99891 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47024 * 89.99986 * 26 24 22 28 28 H 1.48504 * 109.46821 * 209.99676 * 26 24 22 29 29 H 1.48498 * 109.47054 * 329.99862 * 26 24 22 30 30 H 1.09005 * 109.46520 * 60.00350 * 1 2 3 31 31 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47033 * 300.00413 * 1 2 3 33 33 H 1.09006 * 109.47103 * 239.99442 * 2 1 3 34 34 H 1.09004 * 109.46776 * 120.00136 * 2 1 3 35 35 H 1.09008 * 109.47230 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47055 * 299.99992 * 5 3 2 37 37 H 1.08991 * 109.47604 * 60.00122 * 5 3 2 38 38 H 1.07997 * 119.95340 * 359.97438 * 8 7 6 39 39 H 1.07996 * 119.78633 * 179.72004 * 9 8 7 40 40 H 1.08000 * 119.83853 * 180.30395 * 10 9 8 41 41 H 1.07996 * 120.06060 * 179.71201 * 11 10 9 42 42 H 1.07997 * 119.99712 * 226.70753 * 13 12 11 43 43 H 1.07996 * 120.00552 * 192.35922 * 14 13 12 44 44 H 1.08998 * 109.46867 * 299.99680 * 18 17 15 45 45 H 1.09004 * 109.47138 * 59.99596 * 18 17 15 46 46 H 0.97003 * 120.00223 * 359.97438 * 21 19 18 47 47 H 0.97003 * 120.00418 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4182 3.4150 1.1686 8 6 1.6875 4.1272 0.0103 9 6 1.4438 5.4859 -0.0403 10 6 0.9188 6.1464 1.0592 11 6 0.6446 5.4564 2.2193 12 6 0.8916 4.0806 2.2872 13 6 0.6013 3.3373 3.5206 14 6 -0.5777 3.5164 4.1557 15 6 -1.6328 4.2087 3.5097 16 8 -1.5261 4.5253 2.3400 17 8 -2.7553 4.5164 4.1922 18 6 -3.7779 5.2142 3.4784 19 6 -4.9462 5.4691 4.3955 20 8 -4.9071 5.0900 5.5471 21 7 -6.0343 6.1182 3.9362 22 6 -7.0969 6.3506 4.7707 23 1 -7.0622 6.0131 5.7961 24 6 -8.2186 7.0203 4.2973 25 7 -8.2607 7.4314 3.0500 26 14 -9.6668 7.3363 5.4343 27 1 -9.4831 8.6412 6.1188 28 1 -10.9217 7.3659 4.6408 29 1 -9.7467 6.2530 6.4468 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9283 2.4719 -0.1252 36 1 3.9994 0.9051 0.7161 37 1 3.8533 0.9569 -1.0570 38 1 2.0926 3.6198 -0.8527 39 1 1.6598 6.0364 -0.9439 40 1 0.7275 7.2080 1.0074 41 1 0.2399 5.9762 3.0751 42 1 1.3304 2.6477 3.9198 43 1 -0.7165 3.1322 5.1554 44 1 -3.3850 6.1646 3.1172 45 1 -4.1060 4.6113 2.6316 46 1 -6.0654 6.4217 3.0154 47 1 -9.0439 7.8986 2.7193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731249644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:01 Heat of formation + Delta-G solvation = -131.068105 kcal Electronic energy + Delta-G solvation = -29869.821170 eV Core-core repulsion = 25597.165005 eV Total energy + Delta-G solvation = -4272.656165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95133 -41.19310 -40.09214 -38.84343 -37.54868 -36.04409 -35.26930 -34.84241 -33.42962 -31.46593 -30.96496 -30.60478 -29.74753 -26.83521 -25.47549 -25.00374 -23.81052 -22.98965 -21.58715 -21.45140 -20.62535 -20.08940 -19.50256 -18.70426 -17.84599 -17.74024 -17.37587 -16.90998 -16.58873 -16.31817 -16.06816 -15.86546 -15.68956 -15.52935 -15.09499 -14.93432 -14.69275 -14.61013 -14.16508 -14.02084 -13.97132 -13.80643 -13.57326 -13.42581 -13.21952 -12.94411 -12.79236 -12.68472 -12.48880 -12.47676 -12.12662 -12.07953 -12.02856 -11.75441 -11.65799 -11.58346 -11.54811 -11.36062 -10.89518 -10.51885 -10.13249 -9.46473 -8.96937 -8.53383 -6.04234 -0.46437 0.53304 0.67973 1.35078 1.40798 1.52785 1.67966 1.84920 2.00759 2.19748 2.31070 2.85596 3.11878 3.13175 3.62949 3.72043 3.85125 3.88688 3.97578 4.05705 4.09819 4.13443 4.15976 4.21062 4.25456 4.39273 4.43412 4.49000 4.57330 4.67103 4.69133 4.84245 4.88914 4.94607 5.01659 5.04579 5.13092 5.17370 5.25799 5.32522 5.35213 5.39928 5.41742 5.51458 5.61811 5.84079 5.88061 6.45353 6.48745 6.77071 7.01688 7.38412 7.92204 8.63748 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002050 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.282442 B =13655.411374 C =13972.650241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.077 0.923 5 C -0.171 4.171 6 O -0.315 6.315 7 C 0.148 3.852 8 C -0.223 4.223 9 C -0.067 4.067 10 C -0.176 4.176 11 C -0.032 4.032 12 C -0.134 4.134 13 C 0.042 3.958 14 C -0.226 4.226 15 C 0.487 3.513 16 O -0.519 6.519 17 O -0.344 6.344 18 C 0.075 3.925 19 C 0.436 3.564 20 O -0.619 6.619 21 N -0.558 5.558 22 C -0.339 4.339 23 H 0.084 0.916 24 C -0.010 4.010 25 N -0.915 5.915 26 Si 1.000 3.000 27 H -0.268 1.268 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.400 0.600 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.841 -10.512 -11.205 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.095 0.905 5 C -0.228 4.228 6 O -0.229 6.229 7 C 0.102 3.898 8 C -0.241 4.241 9 C -0.085 4.085 10 C -0.194 4.194 11 C -0.051 4.051 12 C -0.135 4.135 13 C 0.024 3.976 14 C -0.244 4.244 15 C 0.336 3.664 16 O -0.411 6.411 17 O -0.260 6.260 18 C -0.003 4.003 19 C 0.223 3.777 20 O -0.506 6.506 21 N -0.195 5.195 22 C -0.468 4.468 23 H 0.102 0.898 24 C -0.211 4.211 25 N -0.555 5.555 26 Si 0.822 3.178 27 H -0.194 1.194 28 H -0.193 1.193 29 H -0.196 1.196 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.129 0.871 42 H 0.192 0.808 43 H 0.181 0.819 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.234 0.766 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.704 -10.700 -10.748 29.845 hybrid contribution -1.155 0.679 -0.186 1.353 sum 24.549 -10.021 -10.934 28.682 Atomic orbital electron populations 1.21766 0.96300 1.02126 1.01184 1.21691 0.95670 0.93599 1.04328 1.22828 0.96323 0.94170 0.85185 0.90522 1.22293 0.93426 1.03096 1.04008 1.86016 1.82625 1.18037 1.36238 1.19078 0.93512 0.83305 0.93862 1.21393 1.08709 0.95745 0.98261 1.21336 0.94854 0.93806 0.98514 1.21138 1.03609 1.01067 0.93630 1.21023 0.93360 0.92358 0.98313 1.18440 1.06754 0.93845 0.94466 1.22695 0.94591 0.90557 0.89752 1.21465 0.92248 1.07148 1.03573 1.20787 0.82647 0.77210 0.85721 1.90935 1.80565 1.51878 1.17700 1.86270 1.26372 1.69047 1.44272 1.22003 0.86208 0.98482 0.93561 1.20155 0.85014 0.83814 0.88735 1.90517 1.82510 1.56840 1.20700 1.41748 1.13944 1.49872 1.13946 1.19730 0.94741 1.36620 0.95684 0.89811 1.26160 1.01191 0.95535 0.98169 1.69673 1.31972 1.38311 1.15584 0.84837 0.76500 0.78865 0.77579 1.19350 1.19314 1.19560 0.93048 0.91468 0.94460 0.87717 0.90665 0.92248 0.91448 0.88948 0.83273 0.83335 0.84852 0.87109 0.80796 0.81905 0.88167 0.88543 0.76610 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.81 71.98 0.71 -1.76 16 2 C -0.12 -1.34 5.64 30.59 0.17 -1.17 16 3 C 0.07 0.95 2.19 30.59 0.07 1.01 16 4 H 0.08 1.02 5.99 -2.39 -0.01 1.00 16 5 C -0.17 -1.59 9.34 71.98 0.67 -0.92 16 6 O -0.32 -6.21 8.77 -90.01 -0.79 -7.00 16 7 C 0.15 3.31 6.68 22.89 0.15 3.47 16 8 C -0.22 -4.26 8.56 22.33 0.19 -4.07 16 9 C -0.07 -1.28 10.03 22.33 0.22 -1.06 16 10 C -0.18 -3.98 10.02 22.24 0.22 -3.76 16 11 C -0.03 -0.83 6.82 22.57 0.15 -0.68 16 12 C -0.13 -3.32 4.33 -20.07 -0.09 -3.41 16 13 C 0.04 0.92 9.33 23.82 0.22 1.14 16 14 C -0.23 -5.78 9.85 22.42 0.22 -5.56 16 15 C 0.49 16.38 6.86 68.69 0.47 16.85 16 16 O -0.52 -18.40 12.16 19.35 0.24 -18.16 16 17 O -0.34 -13.76 9.64 -51.98 -0.50 -14.26 16 18 C 0.08 3.05 5.85 71.23 0.42 3.47 16 19 C 0.44 22.35 7.86 87.66 0.69 23.04 16 20 O -0.62 -36.69 16.08 15.95 0.26 -36.43 16 21 N -0.56 -29.66 5.29 -306.99 -1.62 -31.28 16 22 C -0.34 -19.49 9.68 84.04 0.81 -18.68 16 23 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 24 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 25 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 26 Si 1.00 42.74 29.55 68.60 2.03 44.76 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.77 7.82 -2.39 -0.02 0.76 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.06 0.61 7.54 -2.38 -0.02 0.60 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.15 2.07 5.65 -2.91 -0.02 2.05 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.11 2.96 7.39 -2.91 -0.02 2.93 16 42 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.10 3.66 8.13 -2.39 -0.02 3.64 16 45 H 0.10 3.60 8.13 -2.38 -0.02 3.58 16 46 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 47 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -73.86 399.28 5.92 -67.94 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.26 Total: 35.75 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.78 Total: 7.85 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.34 Total: -80.45 kcal Atomic # 8 Polarization: -75.06 SS G_CDS: -0.80 Total: -75.85 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.86 5.92 -67.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731249644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.131 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds