Wall clock time and date at job start Wed Apr 1 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47190 * 2 1 4 4 H 1.08996 * 109.46788 * 54.99807 * 3 2 1 5 5 C 1.53005 * 109.47269 * 175.00199 * 3 2 1 6 6 O 1.42906 * 109.46853 * 295.00020 * 3 2 1 7 7 C 1.35696 * 116.99308 * 152.18954 * 6 3 2 8 8 C 1.38583 * 120.16727 * 4.75885 * 7 6 3 9 9 C 1.38144 * 120.11641 * 180.02562 * 8 7 6 10 10 C 1.38580 * 120.43701 * 0.02562 * 9 8 7 11 11 C 1.37742 * 120.32526 * 359.97438 * 10 9 8 12 12 C 1.39962 * 119.87575 * 359.73031 * 11 10 9 13 13 C 1.46894 * 120.21767 * 180.27752 * 12 11 10 14 14 C 1.35152 * 119.99832 * 0.27027 * 13 12 11 15 15 C 1.41781 * 120.00369 * 180.02562 * 14 13 12 16 16 O 1.21785 * 119.99665 * 5.08635 * 15 14 13 17 17 N 1.34773 * 120.00481 * 185.08634 * 15 14 13 18 18 C 1.36742 * 120.00055 * 355.04740 * 17 15 14 19 19 H 1.08004 * 120.00007 * 326.35999 * 18 17 15 20 20 C 1.39098 * 120.00142 * 146.35223 * 18 17 15 21 21 N 1.31346 * 120.00045 * 158.30365 * 20 18 17 22 22 Si 1.86792 * 119.99871 * 338.30552 * 20 18 17 23 23 H 1.48502 * 109.47439 * 93.88498 * 22 20 18 24 24 H 1.48508 * 109.47201 * 213.87978 * 22 20 18 25 25 H 1.48497 * 109.47460 * 333.88044 * 22 20 18 26 26 C 1.46503 * 120.00209 * 175.05265 * 17 15 14 27 27 C 1.50696 * 109.47140 * 84.77342 * 26 17 15 28 28 O 1.20833 * 120.00249 * 359.97438 * 27 26 17 29 29 O 1.34237 * 120.00127 * 180.02562 * 27 26 17 30 30 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46894 * 299.99857 * 1 2 3 32 32 H 1.09005 * 109.47424 * 59.99824 * 1 2 3 33 33 H 1.09003 * 109.47354 * 239.99881 * 2 1 3 34 34 H 1.08999 * 109.47796 * 119.99909 * 2 1 3 35 35 H 1.08996 * 109.46831 * 59.99820 * 5 3 2 36 36 H 1.08992 * 109.47127 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.46953 * 299.99937 * 5 3 2 38 38 H 1.08002 * 119.94641 * 0.02562 * 8 7 6 39 39 H 1.07996 * 119.77891 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.83634 * 180.02562 * 10 9 8 41 41 H 1.07997 * 120.06312 * 180.02562 * 11 10 9 42 42 H 1.07997 * 120.00100 * 180.27226 * 13 12 11 43 43 H 1.08010 * 119.99880 * 0.02562 * 14 13 12 44 44 H 0.96999 * 120.00209 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47281 * 204.77077 * 26 17 15 46 46 H 1.09007 * 109.46950 * 324.77473 * 26 17 15 47 47 H 0.96703 * 116.99802 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4950 3.4276 -1.1859 8 6 1.7850 4.1353 -0.0303 9 6 1.6143 5.5057 0.0045 10 6 1.1524 6.1842 -1.1120 11 6 0.8586 5.4989 -2.2701 12 6 1.0325 4.1111 -2.3222 13 6 0.7274 3.3735 -3.5553 14 6 0.2822 4.0356 -4.6461 15 6 -0.0129 3.3237 -5.8362 16 8 0.0455 2.1073 -5.8485 17 7 -0.3581 3.9930 -6.9539 18 6 -0.5224 5.3500 -6.9150 19 1 -0.9120 5.8214 -6.0249 20 6 -0.1878 6.1231 -8.0219 21 7 -0.7144 7.3169 -8.1725 22 14 1.0104 5.4636 -9.2940 23 1 0.2555 4.8099 -10.3932 24 1 1.8148 6.5841 -9.8443 25 1 1.9138 4.4724 -8.6562 26 6 -0.5573 3.2668 -8.2106 27 6 -1.9651 2.7318 -8.2639 28 8 -2.7241 2.9358 -7.3461 29 8 -2.3756 2.0278 -9.3306 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9994 0.9054 -0.7161 36 1 3.9282 2.4720 0.1252 37 1 3.8532 0.9571 1.0570 38 1 2.1451 3.6146 0.8447 39 1 1.8424 6.0519 0.9079 40 1 1.0228 7.2558 -1.0742 41 1 0.4992 6.0319 -3.1379 42 1 0.8587 2.3021 -3.5902 43 1 0.1512 5.1072 -4.6113 44 1 -0.4814 7.8559 -8.9446 45 1 -0.3932 3.9419 -9.0504 46 1 0.1487 2.4381 -8.2672 47 1 -3.2874 1.7057 -9.3195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736885937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:46 Heat of formation + Delta-G solvation = -106.057308 kcal Electronic energy + Delta-G solvation = -30530.678509 eV Core-core repulsion = 26259.106893 eV Total energy + Delta-G solvation = -4271.571616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.35968 -39.87867 -38.64746 -37.76392 -35.61210 -34.95744 -34.30949 -33.52371 -32.10645 -30.32775 -29.96909 -29.50576 -27.94872 -25.17540 -24.23609 -23.85129 -22.70272 -21.64850 -20.83446 -20.13325 -18.70671 -18.28062 -17.62223 -17.05075 -16.90739 -15.99948 -15.80905 -15.53050 -15.34251 -15.06310 -14.88621 -14.76102 -14.28138 -13.95961 -13.78810 -13.66899 -13.49939 -13.18146 -13.07168 -12.80379 -12.58006 -12.48246 -12.40029 -12.07135 -11.97879 -11.86061 -11.70111 -11.26471 -11.15501 -11.07399 -10.99520 -10.79966 -10.72625 -10.55928 -10.45836 -10.12678 -9.97631 -9.85457 -9.38551 -8.79817 -8.46823 -8.09339 -7.56056 -6.63015 -4.16035 0.91981 1.52911 2.41747 2.87408 2.92798 3.13604 3.14633 3.16477 3.48230 3.91694 3.95378 4.22462 4.45544 4.47419 4.67880 4.75416 4.85822 4.92332 4.95943 5.09423 5.16580 5.26998 5.37175 5.37884 5.43339 5.51364 5.61501 5.64087 5.76029 5.78732 5.82117 5.85758 5.90903 5.95287 5.98497 6.14466 6.16817 6.23756 6.41371 6.48362 6.64333 6.85458 7.02192 7.03507 7.03853 7.21252 7.50735 7.89899 8.10377 8.52804 8.79236 9.17172 9.51892 10.46990 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.003120 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.882486 B = 8971.975546 C =10377.149178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.179 4.179 6 O -0.298 6.298 7 C 0.144 3.856 8 C -0.217 4.217 9 C -0.083 4.083 10 C -0.157 4.157 11 C -0.069 4.069 12 C -0.083 4.083 13 C -0.057 4.057 14 C -0.159 4.159 15 C 0.515 3.485 16 O -0.597 6.597 17 N -0.439 5.439 18 C -0.338 4.338 19 H 0.112 0.888 20 C 0.063 3.937 21 N -0.846 5.846 22 Si 0.864 3.136 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.255 1.255 26 C 0.106 3.894 27 C 0.466 3.534 28 O -0.496 6.496 29 O -0.527 6.527 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.279 0.721 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 -6.862 13.702 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.091 0.909 5 C -0.236 4.236 6 O -0.211 6.211 7 C 0.098 3.902 8 C -0.235 4.235 9 C -0.102 4.102 10 C -0.175 4.175 11 C -0.087 4.087 12 C -0.083 4.083 13 C -0.078 4.078 14 C -0.179 4.179 15 C 0.310 3.690 16 O -0.484 6.484 17 N -0.158 5.158 18 C -0.465 4.465 19 H 0.129 0.871 20 C -0.146 4.146 21 N -0.480 5.480 22 Si 0.691 3.309 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.178 1.178 26 C -0.020 4.020 27 C 0.306 3.694 28 O -0.381 6.381 29 O -0.339 6.339 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.065 -7.179 13.659 16.580 hybrid contribution -0.105 -0.058 -0.596 0.608 sum 5.961 -7.237 13.063 16.079 Atomic orbital electron populations 1.21772 0.95003 1.01937 1.02579 1.21639 0.97002 0.93929 1.03102 1.22535 0.94968 0.94056 0.86225 0.90859 1.22352 0.95294 1.03121 1.02858 1.86129 1.83053 1.17243 1.34696 1.19122 0.94856 0.82615 0.93607 1.21117 1.09083 0.95464 0.97862 1.20963 0.97539 0.93438 0.98222 1.20983 1.03054 1.00144 0.93366 1.21464 0.96298 0.92418 0.98511 1.18486 1.04186 0.92922 0.92740 1.22036 0.95778 0.99803 0.90184 1.22158 1.01343 1.01476 0.92960 1.17035 0.80115 0.86953 0.84937 1.90689 1.57971 1.13993 1.85785 1.43346 1.58849 1.07308 1.06305 1.19139 1.44072 0.78820 1.04507 0.87061 1.25389 0.96163 0.95413 0.97600 1.69722 1.37984 1.11124 1.29181 0.87158 0.82628 0.79618 0.81522 1.19574 1.20623 1.17842 1.21385 0.90444 0.98603 0.91549 1.24384 0.91681 0.74463 0.78896 1.90670 1.55618 1.54429 1.37421 1.84569 1.36498 1.67058 1.45745 0.92464 0.93003 0.91511 0.90578 0.90312 0.91261 0.91821 0.91196 0.85551 0.86157 0.85784 0.84225 0.85001 0.84722 0.91093 0.87510 0.87132 0.74286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.81 37.15 0.36 -1.19 16 2 C -0.12 -1.09 5.64 -26.73 -0.15 -1.24 16 3 C 0.08 0.80 2.21 -26.73 -0.06 0.74 16 4 H 0.07 0.67 6.09 -51.93 -0.32 0.36 16 5 C -0.18 -1.55 9.26 37.16 0.34 -1.21 16 6 O -0.30 -4.21 8.51 -18.79 -0.16 -4.37 16 7 C 0.14 2.11 6.65 -38.63 -0.26 1.85 16 8 C -0.22 -2.61 8.39 -39.49 -0.33 -2.94 16 9 C -0.08 -0.95 10.03 -39.49 -0.40 -1.35 16 10 C -0.16 -1.99 10.02 -39.64 -0.40 -2.39 16 11 C -0.07 -1.04 9.41 -39.12 -0.37 -1.41 16 12 C -0.08 -1.37 5.88 -104.92 -0.62 -1.99 16 13 C -0.06 -1.10 9.17 -37.18 -0.34 -1.44 16 14 C -0.16 -3.40 8.51 -39.33 -0.33 -3.74 16 15 C 0.51 12.64 7.22 -14.91 -0.11 12.53 16 16 O -0.60 -15.57 15.84 5.11 0.08 -15.49 16 17 N -0.44 -10.86 1.79 -119.29 -0.21 -11.07 16 18 C -0.34 -8.76 8.95 -15.04 -0.13 -8.89 16 19 H 0.11 3.00 6.85 -52.48 -0.36 2.64 16 20 C 0.06 1.61 5.32 -17.44 -0.09 1.51 16 21 N -0.85 -22.54 13.95 55.50 0.77 -21.77 16 22 Si 0.86 19.07 24.87 -169.99 -4.23 14.84 16 23 H -0.27 -5.62 6.61 56.52 0.37 -5.25 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.25 -5.59 7.11 56.52 0.40 -5.19 16 26 C 0.11 2.38 4.53 -5.19 -0.02 2.36 16 27 C 0.47 10.26 8.36 36.00 0.30 10.56 16 28 O -0.50 -12.50 17.07 -18.76 -0.32 -12.82 16 29 O -0.53 -9.05 13.42 -39.27 -0.53 -9.58 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.83 7.82 -51.93 -0.41 0.42 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.13 1.22 5.57 -52.49 -0.29 0.92 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 2.11 6.17 -52.49 -0.32 1.79 16 42 H 0.13 2.68 7.04 -52.49 -0.37 2.31 16 43 H 0.14 2.76 4.40 -52.48 -0.23 2.53 16 44 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.11 2.37 2.91 -51.93 -0.15 2.22 16 46 H 0.11 2.32 7.66 -51.93 -0.40 1.92 16 47 H 0.40 4.86 9.10 45.56 0.41 5.27 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -32.66 389.82 -6.68 -39.34 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.36 Total: 13.27 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.60 Total: 1.78 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.56 Total: -32.84 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.93 Total: -42.26 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.23 Total: 14.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.66 -6.68 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736885937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.719 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds