Wall clock time and date at job start Wed Apr 1 2020 04:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47190 * 2 1 4 4 H 1.08996 * 109.46788 * 54.99807 * 3 2 1 5 5 C 1.53005 * 109.47269 * 175.00199 * 3 2 1 6 6 O 1.42906 * 109.46853 * 295.00020 * 3 2 1 7 7 C 1.35696 * 116.99308 * 152.18954 * 6 3 2 8 8 C 1.38583 * 120.16727 * 4.75885 * 7 6 3 9 9 C 1.38144 * 120.11641 * 180.02562 * 8 7 6 10 10 C 1.38580 * 120.43701 * 0.02562 * 9 8 7 11 11 C 1.37742 * 120.32526 * 359.97438 * 10 9 8 12 12 C 1.39962 * 119.87575 * 359.73031 * 11 10 9 13 13 C 1.46894 * 120.21767 * 180.27752 * 12 11 10 14 14 C 1.35152 * 119.99832 * 0.27027 * 13 12 11 15 15 C 1.41781 * 120.00369 * 180.02562 * 14 13 12 16 16 O 1.21785 * 119.99665 * 5.08635 * 15 14 13 17 17 N 1.34773 * 120.00481 * 185.08634 * 15 14 13 18 18 C 1.36742 * 120.00055 * 355.04740 * 17 15 14 19 19 H 1.08004 * 120.00007 * 326.35999 * 18 17 15 20 20 C 1.39098 * 120.00142 * 146.35223 * 18 17 15 21 21 N 1.31346 * 120.00045 * 158.30365 * 20 18 17 22 22 Si 1.86792 * 119.99871 * 338.30552 * 20 18 17 23 23 H 1.48502 * 109.47439 * 93.88498 * 22 20 18 24 24 H 1.48508 * 109.47201 * 213.87978 * 22 20 18 25 25 H 1.48497 * 109.47460 * 333.88044 * 22 20 18 26 26 C 1.46503 * 120.00209 * 175.05265 * 17 15 14 27 27 C 1.50696 * 109.47140 * 84.77342 * 26 17 15 28 28 O 1.20833 * 120.00249 * 359.97438 * 27 26 17 29 29 O 1.34237 * 120.00127 * 180.02562 * 27 26 17 30 30 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46894 * 299.99857 * 1 2 3 32 32 H 1.09005 * 109.47424 * 59.99824 * 1 2 3 33 33 H 1.09003 * 109.47354 * 239.99881 * 2 1 3 34 34 H 1.08999 * 109.47796 * 119.99909 * 2 1 3 35 35 H 1.08996 * 109.46831 * 59.99820 * 5 3 2 36 36 H 1.08992 * 109.47127 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.46953 * 299.99937 * 5 3 2 38 38 H 1.08002 * 119.94641 * 0.02562 * 8 7 6 39 39 H 1.07996 * 119.77891 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.83634 * 180.02562 * 10 9 8 41 41 H 1.07997 * 120.06312 * 180.02562 * 11 10 9 42 42 H 1.07997 * 120.00100 * 180.27226 * 13 12 11 43 43 H 1.08010 * 119.99880 * 0.02562 * 14 13 12 44 44 H 0.96999 * 120.00209 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47281 * 204.77077 * 26 17 15 46 46 H 1.09007 * 109.46950 * 324.77473 * 26 17 15 47 47 H 0.96703 * 116.99802 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4950 3.4276 -1.1859 8 6 1.7850 4.1353 -0.0303 9 6 1.6143 5.5057 0.0045 10 6 1.1524 6.1842 -1.1120 11 6 0.8586 5.4989 -2.2701 12 6 1.0325 4.1111 -2.3222 13 6 0.7274 3.3735 -3.5553 14 6 0.2822 4.0356 -4.6461 15 6 -0.0129 3.3237 -5.8362 16 8 0.0455 2.1073 -5.8485 17 7 -0.3581 3.9930 -6.9539 18 6 -0.5224 5.3500 -6.9150 19 1 -0.9120 5.8214 -6.0249 20 6 -0.1878 6.1231 -8.0219 21 7 -0.7144 7.3169 -8.1725 22 14 1.0104 5.4636 -9.2940 23 1 0.2555 4.8099 -10.3932 24 1 1.8148 6.5841 -9.8443 25 1 1.9138 4.4724 -8.6562 26 6 -0.5573 3.2668 -8.2106 27 6 -1.9651 2.7318 -8.2639 28 8 -2.7241 2.9358 -7.3461 29 8 -2.3756 2.0278 -9.3306 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9994 0.9054 -0.7161 36 1 3.9282 2.4720 0.1252 37 1 3.8532 0.9571 1.0570 38 1 2.1451 3.6146 0.8447 39 1 1.8424 6.0519 0.9079 40 1 1.0228 7.2558 -1.0742 41 1 0.4992 6.0319 -3.1379 42 1 0.8587 2.3021 -3.5902 43 1 0.1512 5.1072 -4.6113 44 1 -0.4814 7.8559 -8.9446 45 1 -0.3932 3.9419 -9.0504 46 1 0.1487 2.4381 -8.2672 47 1 -3.2874 1.7057 -9.3195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736885937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:45 Heat of formation + Delta-G solvation = -126.272267 kcal Electronic energy + Delta-G solvation = -30531.555095 eV Core-core repulsion = 26259.106893 eV Total energy + Delta-G solvation = -4272.448202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70199 -41.35426 -40.39762 -38.81808 -37.30737 -36.79393 -35.22941 -34.89089 -34.06589 -31.43253 -30.96149 -30.73412 -29.51739 -27.07904 -25.26842 -24.99762 -23.82181 -23.10075 -21.93969 -21.46583 -20.47169 -19.37498 -19.31114 -18.78681 -18.49850 -17.56597 -17.24207 -17.01232 -16.61006 -16.33907 -16.31150 -15.86507 -15.75735 -15.61931 -14.90349 -14.79532 -14.61746 -14.51203 -14.36587 -14.22521 -14.14860 -13.94259 -13.67026 -13.34871 -13.21159 -12.85974 -12.80751 -12.66928 -12.64115 -12.38175 -12.18770 -12.01973 -11.98863 -11.92300 -11.76252 -11.57804 -11.43885 -11.25130 -11.22514 -10.71027 -10.03825 -9.57651 -8.84253 -8.58306 -6.17195 -0.40945 0.47344 0.98561 1.13256 1.17473 1.34847 1.43311 1.87129 2.11630 2.21503 2.33659 2.64628 2.88664 3.07669 3.68058 3.73330 3.83244 3.84646 3.95852 4.03204 4.07351 4.12564 4.22843 4.32393 4.38159 4.39707 4.44360 4.54445 4.63859 4.66194 4.74102 4.83782 4.95227 5.01968 5.03900 5.07701 5.16162 5.18826 5.24668 5.33516 5.37929 5.50028 5.53928 5.55450 5.70332 5.86935 5.95499 6.11342 6.51005 6.83333 6.95737 7.23248 7.61065 8.55513 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.003120 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.882486 B = 8971.975546 C =10377.149178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.069 3.931 4 H 0.090 0.910 5 C -0.175 4.175 6 O -0.323 6.323 7 C 0.146 3.854 8 C -0.214 4.214 9 C -0.061 4.061 10 C -0.163 4.163 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.016 4.016 14 C -0.205 4.205 15 C 0.511 3.489 16 O -0.623 6.623 17 N -0.449 5.449 18 C -0.347 4.347 19 H 0.083 0.917 20 C 0.027 3.973 21 N -0.885 5.885 22 Si 0.916 3.084 23 H -0.244 1.244 24 H -0.272 1.272 25 H -0.255 1.255 26 C 0.095 3.905 27 C 0.472 3.528 28 O -0.537 6.537 29 O -0.506 6.506 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.285 0.715 45 H 0.114 0.886 46 H 0.126 0.874 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -7.397 15.856 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.232 4.232 6 O -0.237 6.237 7 C 0.100 3.900 8 C -0.233 4.233 9 C -0.079 4.079 10 C -0.181 4.181 11 C -0.094 4.094 12 C -0.130 4.130 13 C -0.037 4.037 14 C -0.226 4.226 15 C 0.307 3.693 16 O -0.513 6.513 17 N -0.168 5.168 18 C -0.474 4.474 19 H 0.101 0.899 20 C -0.179 4.179 21 N -0.520 5.520 22 Si 0.739 3.261 23 H -0.170 1.170 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.030 4.030 27 C 0.313 3.687 28 O -0.426 6.426 29 O -0.320 6.320 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.152 0.848 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.144 0.856 47 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 7.673 -7.732 15.782 19.177 hybrid contribution -0.604 0.016 -1.007 1.174 sum 7.070 -7.716 14.775 18.106 Atomic orbital electron populations 1.21768 0.95915 1.02233 1.01410 1.21697 0.96159 0.93607 1.04023 1.22900 0.96232 0.94317 0.85202 0.89188 1.22339 0.93792 1.03168 1.03886 1.86120 1.83022 1.17209 1.37323 1.19267 0.93943 0.83115 0.93719 1.21484 1.08163 0.95913 0.97697 1.21491 0.94239 0.93292 0.98882 1.21297 1.02626 1.01406 0.92739 1.21500 0.96461 0.92019 0.99390 1.18472 1.08138 0.93741 0.92614 1.22104 0.91780 0.99000 0.90780 1.21960 1.06029 1.01471 0.93093 1.17487 0.79284 0.86836 0.85690 1.90638 1.59429 1.14848 1.86337 1.43335 1.59450 1.06952 1.07091 1.18937 1.44648 0.79714 1.04119 0.89930 1.25959 0.97006 0.95522 0.99366 1.69788 1.39276 1.12443 1.30489 0.86316 0.80589 0.79406 0.79741 1.17005 1.19784 1.17925 1.21539 0.91501 0.99152 0.90823 1.24179 0.91199 0.74207 0.79091 1.90661 1.56565 1.56225 1.39134 1.84481 1.38592 1.65744 1.43152 0.91525 0.91789 0.94965 0.91932 0.87020 0.92504 0.92049 0.88240 0.82390 0.81952 0.83429 0.85626 0.86590 0.84783 0.90491 0.86854 0.85626 0.71314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.81 71.98 0.71 -2.28 16 2 C -0.12 -1.94 5.64 30.59 0.17 -1.77 16 3 C 0.07 1.25 2.21 30.60 0.07 1.32 16 4 H 0.09 1.33 6.09 -2.39 -0.01 1.31 16 5 C -0.17 -2.55 9.26 71.98 0.67 -1.88 16 6 O -0.32 -9.06 8.51 -90.16 -0.77 -9.83 16 7 C 0.15 4.16 6.65 22.89 0.15 4.32 16 8 C -0.21 -4.47 8.39 22.33 0.19 -4.28 16 9 C -0.06 -1.15 10.03 22.33 0.22 -0.93 16 10 C -0.16 -3.79 10.02 22.23 0.22 -3.57 16 11 C -0.08 -2.34 9.41 22.57 0.21 -2.13 16 12 C -0.13 -4.41 5.88 -20.06 -0.12 -4.53 16 13 C -0.02 -0.65 9.17 23.83 0.22 -0.43 16 14 C -0.21 -9.51 8.51 22.43 0.19 -9.32 16 15 C 0.51 26.58 7.22 85.12 0.61 27.19 16 16 O -0.62 -34.09 15.84 -4.62 -0.07 -34.16 16 17 N -0.45 -23.19 1.79 -649.51 -1.16 -24.35 16 18 C -0.35 -18.93 8.95 84.13 0.75 -18.18 16 19 H 0.08 4.84 6.85 -2.91 -0.02 4.82 16 20 C 0.03 1.42 5.32 84.97 0.45 1.87 16 21 N -0.88 -48.47 13.95 21.69 0.30 -48.17 16 22 Si 0.92 39.19 24.87 68.60 1.71 40.90 16 23 H -0.24 -9.47 6.61 99.48 0.66 -8.82 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 C 0.09 4.31 4.53 85.63 0.39 4.70 16 27 C 0.47 20.86 8.36 71.23 0.60 21.46 16 28 O -0.54 -27.81 17.07 21.94 0.37 -27.43 16 29 O -0.51 -16.57 13.42 -51.48 -0.69 -17.26 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 32 H 0.03 0.82 7.82 -2.38 -0.02 0.81 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.93 7.29 -2.39 -0.02 0.91 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.16 2.27 5.57 -2.91 -0.02 2.26 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.13 4.14 6.17 -2.91 -0.02 4.12 16 42 H 0.12 5.09 7.04 -2.91 -0.02 5.07 16 43 H 0.13 6.10 4.40 -2.91 -0.01 6.09 16 44 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.11 4.94 2.91 -2.39 -0.01 4.94 16 46 H 0.13 5.26 7.66 -2.38 -0.02 5.24 16 47 H 0.43 9.47 9.10 -74.06 -0.67 8.80 16 Total: -1.00 -75.43 389.82 5.69 -69.74 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.30 Total: 39.02 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.71 Total: 11.55 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -0.86 Total: -72.52 kcal Atomic # 8 Polarization: -87.53 SS G_CDS: -1.16 Total: -88.68 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.71 Total: 40.90 kcal Total: -75.43 5.69 -69.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736885937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.536 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds