Wall clock time and date at job start Wed Apr 1 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47028 * 2 1 4 4 H 1.08998 * 109.47087 * 304.99867 * 3 2 1 5 5 C 1.53001 * 109.47202 * 184.99863 * 3 2 1 6 6 O 1.42904 * 109.47056 * 65.00002 * 3 2 1 7 7 C 1.35689 * 116.99877 * 211.29986 * 6 3 2 8 8 C 1.38595 * 120.16401 * 352.66372 * 7 6 3 9 9 C 1.38144 * 120.11169 * 180.23574 * 8 7 6 10 10 C 1.38572 * 120.44393 * 359.48600 * 9 8 7 11 11 C 1.37749 * 120.32023 * 0.51640 * 10 9 8 12 12 C 1.39961 * 119.87746 * 359.74179 * 11 10 9 13 13 C 1.46889 * 120.21410 * 179.97438 * 12 11 10 14 14 C 1.35153 * 120.00259 * 46.81200 * 13 12 11 15 15 C 1.41786 * 119.99940 * 12.04177 * 14 13 12 16 16 O 1.21788 * 119.99891 * 7.86141 * 15 14 13 17 17 N 1.34777 * 120.00115 * 187.85675 * 15 14 13 18 18 C 1.36750 * 119.99909 * 5.11051 * 17 15 14 19 19 H 1.08001 * 120.00006 * 310.36813 * 18 17 15 20 20 C 1.39094 * 119.99977 * 130.36572 * 18 17 15 21 21 N 1.31343 * 120.00177 * 181.34160 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 1.34547 * 20 18 17 23 23 H 1.48498 * 109.47215 * 93.87220 * 22 20 18 24 24 H 1.48507 * 109.46784 * 213.86772 * 22 20 18 25 25 H 1.48500 * 109.47289 * 333.86629 * 22 20 18 26 26 C 1.46494 * 120.00079 * 185.10772 * 17 15 14 27 27 C 1.50702 * 109.47405 * 93.77429 * 26 17 15 28 28 O 1.20832 * 119.99656 * 359.97438 * 27 26 17 29 29 O 1.34223 * 120.00233 * 180.02562 * 27 26 17 30 30 H 1.08994 * 109.47432 * 299.99956 * 1 2 3 31 31 H 1.09003 * 109.46976 * 60.00350 * 1 2 3 32 32 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46888 * 240.00301 * 2 1 3 34 34 H 1.09000 * 109.46861 * 120.00407 * 2 1 3 35 35 H 1.08998 * 109.47103 * 299.99994 * 5 3 2 36 36 H 1.09006 * 109.46962 * 60.00108 * 5 3 2 37 37 H 1.09000 * 109.47205 * 180.02562 * 5 3 2 38 38 H 1.07994 * 119.94109 * 359.95867 * 8 7 6 39 39 H 1.07997 * 119.77551 * 179.74804 * 9 8 7 40 40 H 1.08002 * 119.84120 * 180.26279 * 10 9 8 41 41 H 1.08000 * 120.06061 * 179.72560 * 11 10 9 42 42 H 1.08005 * 119.99927 * 226.82005 * 13 12 11 43 43 H 1.07995 * 120.00009 * 192.03685 * 14 13 12 44 44 H 0.96998 * 119.99953 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.47593 * 213.77212 * 26 17 15 46 46 H 1.09000 * 109.47245 * 333.77219 * 26 17 15 47 47 H 0.96700 * 116.99736 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4241 3.4163 1.1699 8 6 1.6960 4.1282 0.0123 9 6 1.4580 5.4881 -0.0370 10 6 0.9368 6.1500 1.0632 11 6 0.6599 5.4602 2.2229 12 6 0.9008 4.0831 2.2894 13 6 0.6087 3.3403 3.5226 14 6 -0.5699 3.5228 4.1583 15 6 -1.6210 4.2243 3.5154 16 8 -1.5164 4.5373 2.3431 17 7 -2.7359 4.5448 4.2016 18 6 -2.8113 4.2869 5.5425 19 1 -2.5525 3.3086 5.9197 20 6 -3.2212 5.2847 6.4206 21 7 -3.2683 5.0452 7.7111 22 14 -3.7047 6.9656 5.7644 23 1 -5.1735 7.0096 5.5504 24 1 -3.3159 8.0105 6.7453 25 1 -3.0090 7.2128 4.4759 26 6 -3.8669 5.1693 3.5111 27 6 -4.8412 4.1044 3.0779 28 8 -4.6138 2.9427 3.3207 29 8 -5.9610 4.4461 2.4215 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.9994 0.9053 0.7161 36 1 3.8532 0.9570 -1.0571 37 1 3.9281 2.4720 -0.1252 38 1 2.0988 3.6198 -0.8511 39 1 1.6757 6.0383 -0.9405 40 1 0.7506 7.2127 1.0125 41 1 0.2579 5.9811 3.0793 42 1 1.3359 2.6485 3.9213 43 1 -0.7111 3.1341 5.1560 44 1 -3.5538 5.7411 8.3235 45 1 -4.3655 5.8650 4.1861 46 1 -3.5052 5.7087 2.6357 47 1 -6.5552 3.7281 2.1638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736885940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:51 Heat of formation + Delta-G solvation = -94.512852 kcal Electronic energy + Delta-G solvation = -31598.636563 eV Core-core repulsion = 27327.565552 eV Total energy + Delta-G solvation = -4271.071010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24617 -39.84486 -38.81905 -37.39709 -35.66753 -34.94005 -34.15015 -33.16399 -32.04855 -30.23083 -29.80673 -29.27427 -27.90729 -25.06392 -24.07945 -23.57388 -22.48597 -21.66641 -20.73691 -20.17804 -18.83530 -18.11024 -17.65836 -16.99634 -16.76699 -15.87062 -15.74652 -15.38153 -15.21736 -15.01539 -14.84754 -14.66881 -14.14546 -13.90906 -13.65134 -13.57394 -13.34212 -13.01067 -12.90022 -12.79620 -12.56404 -12.39525 -12.17177 -12.09015 -11.83898 -11.71943 -11.56763 -11.24314 -11.17560 -11.05524 -11.01100 -10.89188 -10.57938 -10.45153 -10.34634 -10.16806 -9.79842 -9.49645 -9.15467 -8.79485 -8.09406 -7.75661 -7.43135 -6.50744 -4.31341 1.30665 1.89671 2.34398 2.80630 2.97855 3.11250 3.14489 3.35432 3.44724 3.99422 4.21906 4.32266 4.45621 4.58320 4.81119 4.90619 4.91591 5.09707 5.17517 5.22585 5.37527 5.41313 5.46499 5.49965 5.56524 5.69308 5.71948 5.78244 5.83378 5.85848 5.88633 5.93549 5.97361 6.05554 6.13600 6.28881 6.33532 6.47468 6.58103 6.72109 6.89783 6.97476 6.98173 7.11643 7.21171 7.29460 7.76084 7.95243 8.19282 8.47954 8.85435 9.17944 9.52600 10.57910 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003635 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.286442 B = 7700.580431 C = 8253.170130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.073 0.927 5 C -0.175 4.175 6 O -0.303 6.303 7 C 0.138 3.862 8 C -0.222 4.222 9 C -0.083 4.083 10 C -0.166 4.166 11 C -0.009 4.009 12 C -0.067 4.067 13 C -0.053 4.053 14 C -0.161 4.161 15 C 0.528 3.472 16 O -0.577 6.577 17 N -0.448 5.448 18 C -0.339 4.339 19 H 0.107 0.893 20 C 0.068 3.932 21 N -0.863 5.863 22 Si 0.873 3.127 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.256 1.256 26 C 0.108 3.892 27 C 0.462 3.538 28 O -0.497 6.497 29 O -0.527 6.527 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.141 0.859 44 H 0.277 0.723 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -2.475 -13.567 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.091 0.909 5 C -0.233 4.233 6 O -0.217 6.217 7 C 0.093 3.907 8 C -0.241 4.241 9 C -0.102 4.102 10 C -0.184 4.184 11 C -0.027 4.027 12 C -0.068 4.068 13 C -0.073 4.073 14 C -0.182 4.182 15 C 0.322 3.678 16 O -0.462 6.462 17 N -0.169 5.169 18 C -0.467 4.467 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.498 5.498 22 Si 0.701 3.299 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.181 1.181 26 C -0.017 4.017 27 C 0.302 3.698 28 O -0.382 6.382 29 O -0.339 6.339 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 8.780 -2.400 -13.567 16.338 hybrid contribution -1.108 0.350 -0.359 1.216 sum 7.673 -2.049 -13.927 16.032 Atomic orbital electron populations 1.21756 0.94931 1.01707 1.02820 1.21639 0.97017 0.94169 1.02754 1.22473 0.94690 0.93908 0.86685 0.90893 1.22319 0.95460 1.02942 1.02561 1.86051 1.83020 1.18811 1.33824 1.18996 0.95355 0.82379 0.93963 1.20952 1.09846 0.95503 0.97775 1.20801 0.97962 0.93572 0.97836 1.20784 1.04029 0.99752 0.93854 1.20961 0.91937 0.92097 0.97751 1.18212 1.02300 0.93212 0.93083 1.22050 0.96504 0.96052 0.92740 1.22247 0.93314 1.01638 1.00962 1.17318 0.82976 0.81015 0.86461 1.90777 1.81189 1.57084 1.17170 1.43376 1.09151 1.55861 1.08552 1.19049 1.49692 0.99654 0.78301 0.87586 1.25498 0.95478 0.98043 0.94947 1.69589 1.43718 1.34688 1.01817 0.86982 0.79278 0.84007 0.79625 1.19651 1.20924 1.18087 1.21384 0.87829 0.92859 0.99602 1.24576 0.80325 0.91122 0.73784 1.90670 1.74842 1.21142 1.51592 1.84579 1.33799 1.45073 1.70449 0.91485 0.93018 0.92627 0.90544 0.90849 0.91499 0.91388 0.91900 0.86183 0.86805 0.86651 0.86155 0.85506 0.84132 0.91243 0.89036 0.86618 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 37.16 0.36 -1.49 16 2 C -0.12 -1.22 5.64 -26.73 -0.15 -1.37 16 3 C 0.08 0.91 2.19 -26.73 -0.06 0.85 16 4 H 0.07 0.84 6.00 -51.93 -0.31 0.53 16 5 C -0.18 -1.63 9.33 37.16 0.35 -1.29 16 6 O -0.30 -4.63 8.77 -18.77 -0.16 -4.80 16 7 C 0.14 2.30 6.67 -38.63 -0.26 2.04 16 8 C -0.22 -3.25 8.54 -39.48 -0.34 -3.59 16 9 C -0.08 -1.20 10.03 -39.49 -0.40 -1.60 16 10 C -0.17 -2.63 10.02 -39.64 -0.40 -3.03 16 11 C -0.01 -0.17 6.83 -39.12 -0.27 -0.43 16 12 C -0.07 -1.23 4.33 -104.93 -0.45 -1.69 16 13 C -0.05 -0.97 9.33 -37.18 -0.35 -1.31 16 14 C -0.16 -3.35 9.04 -39.32 -0.36 -3.70 16 15 C 0.53 12.23 6.55 -14.90 -0.10 12.13 16 16 O -0.58 -13.64 11.90 5.11 0.06 -13.58 16 17 N -0.45 -10.75 1.64 -119.29 -0.20 -10.95 16 18 C -0.34 -8.79 8.65 -15.04 -0.13 -8.92 16 19 H 0.11 2.95 7.22 -52.49 -0.38 2.57 16 20 C 0.07 1.76 5.50 -17.44 -0.10 1.66 16 21 N -0.86 -23.44 13.95 55.50 0.77 -22.67 16 22 Si 0.87 19.44 24.71 -169.99 -4.20 15.24 16 23 H -0.27 -5.81 7.07 56.52 0.40 -5.41 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.26 -5.52 6.37 56.52 0.36 -5.16 16 26 C 0.11 2.38 4.48 -5.20 -0.02 2.35 16 27 C 0.46 9.82 8.38 36.01 0.30 10.12 16 28 O -0.50 -12.06 17.13 -18.75 -0.32 -12.38 16 29 O -0.53 -8.77 13.42 -39.24 -0.53 -9.30 16 30 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 38 H 0.12 1.45 5.64 -52.49 -0.30 1.16 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 2.27 7.39 -52.49 -0.39 1.88 16 42 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 43 H 0.14 2.91 6.56 -52.49 -0.34 2.56 16 44 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 1.99 2.98 -51.93 -0.15 1.84 16 46 H 0.12 2.40 7.25 -51.93 -0.38 2.02 16 47 H 0.40 4.66 9.10 45.56 0.41 5.07 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -31.72 386.23 -6.72 -38.45 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.61 Total: 13.41 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.36 Total: 0.75 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.58 Total: -33.61 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.95 Total: -40.05 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.20 Total: 15.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.72 -6.72 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736885940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.068 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds