Wall clock time and date at job start Wed Apr 1 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47028 * 2 1 4 4 H 1.08998 * 109.47087 * 304.99867 * 3 2 1 5 5 C 1.53001 * 109.47202 * 184.99863 * 3 2 1 6 6 O 1.42904 * 109.47056 * 65.00002 * 3 2 1 7 7 C 1.35689 * 116.99877 * 211.29986 * 6 3 2 8 8 C 1.38595 * 120.16401 * 352.66372 * 7 6 3 9 9 C 1.38144 * 120.11169 * 180.23574 * 8 7 6 10 10 C 1.38572 * 120.44393 * 359.48600 * 9 8 7 11 11 C 1.37749 * 120.32023 * 0.51640 * 10 9 8 12 12 C 1.39961 * 119.87746 * 359.74179 * 11 10 9 13 13 C 1.46889 * 120.21410 * 179.97438 * 12 11 10 14 14 C 1.35153 * 120.00259 * 46.81200 * 13 12 11 15 15 C 1.41786 * 119.99940 * 12.04177 * 14 13 12 16 16 O 1.21788 * 119.99891 * 7.86141 * 15 14 13 17 17 N 1.34777 * 120.00115 * 187.85675 * 15 14 13 18 18 C 1.36750 * 119.99909 * 5.11051 * 17 15 14 19 19 H 1.08001 * 120.00006 * 310.36813 * 18 17 15 20 20 C 1.39094 * 119.99977 * 130.36572 * 18 17 15 21 21 N 1.31343 * 120.00177 * 181.34160 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 1.34547 * 20 18 17 23 23 H 1.48498 * 109.47215 * 93.87220 * 22 20 18 24 24 H 1.48507 * 109.46784 * 213.86772 * 22 20 18 25 25 H 1.48500 * 109.47289 * 333.86629 * 22 20 18 26 26 C 1.46494 * 120.00079 * 185.10772 * 17 15 14 27 27 C 1.50702 * 109.47405 * 93.77429 * 26 17 15 28 28 O 1.20832 * 119.99656 * 359.97438 * 27 26 17 29 29 O 1.34223 * 120.00233 * 180.02562 * 27 26 17 30 30 H 1.08994 * 109.47432 * 299.99956 * 1 2 3 31 31 H 1.09003 * 109.46976 * 60.00350 * 1 2 3 32 32 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46888 * 240.00301 * 2 1 3 34 34 H 1.09000 * 109.46861 * 120.00407 * 2 1 3 35 35 H 1.08998 * 109.47103 * 299.99994 * 5 3 2 36 36 H 1.09006 * 109.46962 * 60.00108 * 5 3 2 37 37 H 1.09000 * 109.47205 * 180.02562 * 5 3 2 38 38 H 1.07994 * 119.94109 * 359.95867 * 8 7 6 39 39 H 1.07997 * 119.77551 * 179.74804 * 9 8 7 40 40 H 1.08002 * 119.84120 * 180.26279 * 10 9 8 41 41 H 1.08000 * 120.06061 * 179.72560 * 11 10 9 42 42 H 1.08005 * 119.99927 * 226.82005 * 13 12 11 43 43 H 1.07995 * 120.00009 * 192.03685 * 14 13 12 44 44 H 0.96998 * 119.99953 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.47593 * 213.77212 * 26 17 15 46 46 H 1.09000 * 109.47245 * 333.77219 * 26 17 15 47 47 H 0.96700 * 116.99736 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4241 3.4163 1.1699 8 6 1.6960 4.1282 0.0123 9 6 1.4580 5.4881 -0.0370 10 6 0.9368 6.1500 1.0632 11 6 0.6599 5.4602 2.2229 12 6 0.9008 4.0831 2.2894 13 6 0.6087 3.3403 3.5226 14 6 -0.5699 3.5228 4.1583 15 6 -1.6210 4.2243 3.5154 16 8 -1.5164 4.5373 2.3431 17 7 -2.7359 4.5448 4.2016 18 6 -2.8113 4.2869 5.5425 19 1 -2.5525 3.3086 5.9197 20 6 -3.2212 5.2847 6.4206 21 7 -3.2683 5.0452 7.7111 22 14 -3.7047 6.9656 5.7644 23 1 -5.1735 7.0096 5.5504 24 1 -3.3159 8.0105 6.7453 25 1 -3.0090 7.2128 4.4759 26 6 -3.8669 5.1693 3.5111 27 6 -4.8412 4.1044 3.0779 28 8 -4.6138 2.9427 3.3207 29 8 -5.9610 4.4461 2.4215 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.9994 0.9053 0.7161 36 1 3.8532 0.9570 -1.0571 37 1 3.9281 2.4720 -0.1252 38 1 2.0988 3.6198 -0.8511 39 1 1.6757 6.0383 -0.9405 40 1 0.7506 7.2127 1.0125 41 1 0.2579 5.9811 3.0793 42 1 1.3359 2.6485 3.9213 43 1 -0.7111 3.1341 5.1560 44 1 -3.5538 5.7411 8.3235 45 1 -4.3655 5.8650 4.1861 46 1 -3.5052 5.7087 2.6357 47 1 -6.5552 3.7281 2.1638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736885940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:51 Heat of formation + Delta-G solvation = -113.577551 kcal Electronic energy + Delta-G solvation = -31599.463270 eV Core-core repulsion = 27327.565552 eV Total energy + Delta-G solvation = -4271.897718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75634 -41.24034 -40.41504 -38.62478 -37.26270 -36.70082 -35.16006 -34.64420 -33.99593 -31.39553 -30.90102 -30.60123 -29.47038 -26.96847 -25.08247 -24.92450 -23.70943 -23.07283 -22.12553 -21.39778 -20.57562 -19.35352 -19.29489 -18.76755 -18.25108 -17.54305 -17.14947 -16.90762 -16.67845 -16.39319 -16.15834 -15.84757 -15.63739 -15.32293 -14.96520 -14.79694 -14.62890 -14.52904 -14.27414 -14.10831 -14.00509 -13.79269 -13.67763 -13.41295 -13.18716 -12.98093 -12.74926 -12.64643 -12.61386 -12.37767 -12.26053 -12.03229 -11.95498 -11.93903 -11.55418 -11.51604 -11.42508 -11.19713 -10.81633 -10.52420 -9.76566 -9.24089 -8.77594 -8.48496 -6.33987 -0.12604 0.65797 0.93443 1.10959 1.20964 1.30997 1.40289 1.88707 2.13924 2.30634 2.52306 2.70089 2.98254 3.01789 3.72925 3.82674 3.86157 3.93127 4.03061 4.09575 4.12685 4.19122 4.27433 4.32174 4.37748 4.47280 4.57592 4.60493 4.66812 4.73736 4.79891 4.88222 4.99584 5.01573 5.12044 5.16996 5.22211 5.26138 5.32407 5.36289 5.43787 5.54236 5.55463 5.63106 5.77725 5.98551 6.05784 6.12365 6.61919 6.89738 6.97027 7.27843 7.67044 8.63472 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003635 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.286442 B = 7700.580431 C = 8253.170130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.077 0.923 5 C -0.169 4.169 6 O -0.321 6.321 7 C 0.137 3.863 8 C -0.222 4.222 9 C -0.073 4.073 10 C -0.175 4.175 11 C -0.026 4.026 12 C -0.108 4.108 13 C -0.015 4.015 14 C -0.206 4.206 15 C 0.530 3.470 16 O -0.584 6.584 17 N -0.462 5.462 18 C -0.337 4.337 19 H 0.069 0.931 20 C 0.026 3.974 21 N -0.905 5.905 22 Si 0.926 3.074 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.246 1.246 26 C 0.101 3.899 27 C 0.469 3.531 28 O -0.536 6.536 29 O -0.508 6.508 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.128 0.872 44 H 0.281 0.719 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.435 -1.724 -17.165 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.095 0.905 5 C -0.226 4.226 6 O -0.235 6.235 7 C 0.092 3.908 8 C -0.240 4.240 9 C -0.091 4.091 10 C -0.194 4.194 11 C -0.045 4.045 12 C -0.109 4.109 13 C -0.035 4.035 14 C -0.226 4.226 15 C 0.325 3.675 16 O -0.470 6.470 17 N -0.184 5.184 18 C -0.465 4.465 19 H 0.087 0.913 20 C -0.178 4.178 21 N -0.541 5.541 22 Si 0.750 3.250 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.170 1.170 26 C -0.023 4.023 27 C 0.310 3.690 28 O -0.425 6.425 29 O -0.321 6.321 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.166 0.834 43 H 0.146 0.854 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.147 0.853 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 9.713 -1.659 -17.195 19.819 hybrid contribution -1.306 0.000 0.570 1.425 sum 8.407 -1.659 -16.625 18.704 Atomic orbital electron populations 1.21744 0.96553 1.01988 1.00911 1.21688 0.95459 0.93789 1.04245 1.22828 0.96413 0.94111 0.85326 0.90488 1.22283 0.93329 1.03084 1.03931 1.86037 1.82973 1.18298 1.36234 1.19106 0.94576 0.83144 0.94017 1.21324 1.09031 0.95815 0.97867 1.21260 0.95738 0.93635 0.98436 1.21073 1.03963 1.00828 0.93486 1.20940 0.92945 0.92322 0.98277 1.18348 1.04920 0.93727 0.93884 1.22378 0.95277 0.93852 0.91973 1.22077 0.94424 1.04712 1.01402 1.17589 0.83149 0.80388 0.86414 1.90742 1.81508 1.57538 1.17247 1.43348 1.10248 1.56837 1.07961 1.18723 1.49750 0.98392 0.79642 0.91343 1.26141 0.95329 1.01482 0.94891 1.69694 1.45249 1.36141 1.03057 0.86132 0.79990 0.79382 0.79455 1.17715 1.20578 1.17022 1.21449 0.87678 0.93148 1.00031 1.24338 0.81085 0.90146 0.73443 1.90667 1.75966 1.22507 1.53356 1.84491 1.32601 1.45910 1.69100 0.95417 0.92781 0.91343 0.87198 0.91105 0.91770 0.88600 0.92235 0.83241 0.83019 0.84772 0.88128 0.83417 0.85424 0.90862 0.88570 0.85267 0.71388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.81 71.98 0.71 -2.87 16 2 C -0.11 -2.10 5.64 30.59 0.17 -1.93 16 3 C 0.07 1.42 2.19 30.59 0.07 1.49 16 4 H 0.08 1.52 6.00 -2.39 -0.01 1.51 16 5 C -0.17 -2.59 9.33 71.98 0.67 -1.92 16 6 O -0.32 -9.50 8.77 -90.08 -0.79 -10.29 16 7 C 0.14 4.41 6.67 22.89 0.15 4.57 16 8 C -0.22 -5.87 8.54 22.33 0.19 -5.67 16 9 C -0.07 -1.85 10.03 22.33 0.22 -1.63 16 10 C -0.18 -5.26 10.02 22.23 0.22 -5.04 16 11 C -0.03 -0.96 6.83 22.57 0.15 -0.81 16 12 C -0.11 -3.99 4.33 -20.06 -0.09 -4.08 16 13 C -0.01 -0.55 9.33 23.83 0.22 -0.33 16 14 C -0.21 -9.11 9.04 22.44 0.20 -8.91 16 15 C 0.53 25.54 6.55 85.12 0.56 26.09 16 16 O -0.58 -28.17 11.90 -4.63 -0.06 -28.22 16 17 N -0.46 -22.91 1.64 -649.50 -1.07 -23.97 16 18 C -0.34 -18.40 8.65 84.13 0.73 -17.67 16 19 H 0.07 4.16 7.22 -2.91 -0.02 4.14 16 20 C 0.03 1.36 5.50 84.97 0.47 1.83 16 21 N -0.90 -51.05 13.95 21.69 0.30 -50.75 16 22 Si 0.93 40.04 24.71 68.60 1.70 41.74 16 23 H -0.25 -10.11 7.07 99.48 0.70 -9.40 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.25 -10.18 6.37 99.48 0.63 -9.54 16 26 C 0.10 4.43 4.48 85.63 0.38 4.81 16 27 C 0.47 19.71 8.38 71.24 0.60 20.31 16 28 O -0.54 -26.48 17.13 21.95 0.38 -26.10 16 29 O -0.51 -15.78 13.42 -51.35 -0.69 -16.47 16 30 H 0.03 0.84 7.82 -2.39 -0.02 0.82 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.06 0.96 7.51 -2.39 -0.02 0.95 16 38 H 0.15 3.00 5.64 -2.91 -0.02 2.99 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.10 3.95 7.39 -2.91 -0.02 3.93 16 42 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.13 5.85 6.56 -2.91 -0.02 5.83 16 44 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.10 4.08 2.98 -2.38 -0.01 4.07 16 46 H 0.13 5.23 7.25 -2.39 -0.02 5.22 16 47 H 0.42 8.83 9.10 -74.06 -0.67 8.16 16 Total: -1.00 -72.21 386.23 5.67 -66.55 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.26 Total: 39.28 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.63 Total: 8.24 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -0.76 Total: -74.72 kcal Atomic # 8 Polarization: -79.93 SS G_CDS: -1.16 Total: -81.09 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.70 Total: 41.74 kcal Total: -72.21 5.67 -66.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736885940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.029 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds