Wall clock time and date at job start Wed Apr 1 2020 04:20:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.47562 * 2 1
4 4 N 1.46503 * 109.46442 * 240.00063 * 2 1 3
5 5 C 1.46766 * 124.34575 * 239.72277 * 4 2 1
6 6 C 1.54656 * 105.38041 * 162.85790 * 5 4 2
7 7 C 1.54630 * 101.68418 * 25.77104 * 6 5 4
8 8 H 1.09005 * 110.60140 * 216.25191 * 7 6 5
9 9 O 1.45206 * 110.48826 * 93.66290 * 7 6 5
10 10 C 1.34228 * 117.00014 * 153.77029 * 9 7 6
11 11 O 1.20827 * 119.99893 * 0.02562 * 10 9 7
12 12 C 1.50698 * 120.00184 * 180.02562 * 10 9 7
13 13 C 1.50692 * 109.47397 * 180.02562 * 12 10 9
14 14 C 1.38312 * 119.92962 * 269.72764 * 13 12 10
15 15 C 1.38100 * 120.06710 * 179.72524 * 14 13 12
16 16 C 1.38873 * 119.93023 * 0.52300 * 15 14 13
17 17 O 1.35755 * 120.06834 * 179.72465 * 16 15 14
18 18 C 1.34828 * 117.00125 * 174.48664 * 17 16 15
19 19 H 1.07993 * 120.00101 * 5.05743 * 18 17 16
20 20 C 1.38658 * 120.00060 * 185.06184 * 18 17 16
21 21 N 1.31553 * 120.00125 * 180.02562 * 20 18 17
22 22 Si 1.86803 * 119.99747 * 359.97438 * 20 18 17
23 23 H 1.48496 * 109.47038 * 90.00581 * 22 20 18
24 24 H 1.48502 * 109.46772 * 210.00328 * 22 20 18
25 25 H 1.48501 * 109.47177 * 330.00233 * 22 20 18
26 26 C 1.38881 * 119.86519 * 359.74965 * 16 15 14
27 27 C 1.38100 * 119.92753 * 0.02562 * 26 16 15
28 28 C 1.34419 * 124.35366 * 60.03364 * 4 2 1
29 29 O 1.21279 * 124.93646 * 0.41736 * 28 4 2
30 30 H 1.09003 * 109.46754 * 59.99640 * 1 2 3
31 31 H 1.08993 * 109.47663 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46525 * 300.00147 * 1 2 3
33 33 H 1.08993 * 109.46746 * 120.00357 * 2 1 3
34 34 H 1.09003 * 109.46961 * 60.00025 * 3 2 1
35 35 H 1.08996 * 109.47211 * 180.02562 * 3 2 1
36 36 H 1.09003 * 109.47109 * 300.00454 * 3 2 1
37 37 H 1.08999 * 110.25009 * 281.98686 * 5 4 2
38 38 H 1.09001 * 110.24767 * 43.99144 * 5 4 2
39 39 H 1.08999 * 111.19491 * 267.59671 * 6 5 4
40 40 H 1.09005 * 110.82008 * 143.77555 * 6 5 4
41 41 H 1.09008 * 109.46960 * 300.00412 * 12 10 9
42 42 H 1.08999 * 109.46893 * 59.99961 * 12 10 9
43 43 H 1.08001 * 119.96277 * 359.97285 * 14 13 12
44 44 H 1.07998 * 120.02851 * 180.26560 * 15 14 13
45 45 H 0.97001 * 120.00216 * 179.97438 * 21 20 18
46 46 H 1.07998 * 120.03525 * 179.97438 * 26 16 15
47 47 H 1.08001 * 119.96329 * 180.02562 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0402 1.4424 0.0000
4 7 2.0182 -0.6906 -1.1963
5 6 2.8702 -1.8855 -1.1728
6 6 2.7603 -2.4955 -2.5898
7 6 2.4040 -1.2531 -3.4387
8 1 1.7082 -1.5191 -4.2345
9 8 3.6052 -0.6557 -3.9943
10 6 3.4678 0.0442 -5.1314
11 8 2.3798 0.1544 -5.6453
12 6 4.6705 0.6925 -5.7672
13 6 4.2488 1.4117 -7.0225
14 6 4.2607 0.7473 -8.2355
15 6 3.8694 1.4019 -9.3868
16 6 3.4739 2.7318 -9.3273
17 8 3.0940 3.3796 -10.4582
18 6 2.6139 4.6314 -10.3147
19 1 2.6215 5.1046 -9.3440
20 6 2.1104 5.3110 -11.4134
21 7 1.6424 6.5325 -11.2735
22 14 2.0979 4.4926 -13.0926
23 1 0.8211 3.7567 -13.2751
24 1 2.2277 5.5283 -14.1489
25 1 3.2350 3.5424 -13.1886
26 6 3.4684 3.3978 -8.1087
27 6 3.8565 2.7363 -6.9602
28 6 1.7484 -0.3080 -2.4563
29 8 1.0771 0.6551 -2.7610
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3632 0.5139 0.8900
33 1 1.8933 -0.5139 0.8899
34 1 1.6768 1.9563 0.8900
35 1 3.1301 1.4423 -0.0005
36 1 1.6768 1.9563 -0.8900
37 1 3.9022 -1.6088 -0.9573
38 1 2.5057 -2.5941 -0.4291
39 1 1.9667 -3.2411 -2.6374
40 1 3.7134 -2.9217 -2.9031
41 1 5.1096 1.4063 -5.0700
42 1 5.4065 -0.0721 -6.0158
43 1 4.5726 -0.2857 -8.2817
44 1 3.8748 0.8812 -10.3330
45 1 1.2905 7.0081 -12.0422
46 1 3.1618 4.4322 -8.0593
47 1 3.8520 3.2536 -6.0121
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000746982553.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:32
Heat of formation + Delta-G solvation = -112.978108 kcal
Electronic energy + Delta-G solvation = -30030.515661 eV
Core-core repulsion = 25758.643937 eV
Total energy + Delta-G solvation = -4271.871724 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.32906 -39.98707 -39.06618 -37.11364 -36.74942 -36.25053 -34.75573 -32.53281
-31.72469 -30.24692 -30.10665 -27.93469 -27.51633 -26.90633 -25.00153 -22.98931
-22.60069 -22.10611 -21.62818 -20.22178 -19.25138 -17.97102 -17.87910 -17.44932
-17.23927 -16.30615 -16.27354 -15.76544 -15.56343 -14.90804 -14.72328 -14.33489
-14.20703 -14.06141 -13.92243 -13.76357 -13.67889 -13.47585 -13.40838 -12.98155
-12.75543 -12.60693 -12.40866 -12.31132 -12.20130 -12.10048 -11.96220 -11.66977
-11.60885 -11.47731 -11.31573 -11.27217 -10.97260 -10.76445 -10.67345 -10.30819
-10.14205 -9.69277 -9.36931 -9.08178 -8.84908 -8.23587 -7.33080 -6.39734
-4.06136 1.78648 2.16615 2.20452 2.32114 2.55204 2.99076 3.23932
3.28192 3.41990 3.87124 3.93226 4.25589 4.31271 4.41626 4.53642
4.57713 4.71981 4.80966 4.81623 4.86141 4.97706 5.05568 5.12291
5.18061 5.23167 5.28355 5.30404 5.32713 5.43877 5.48276 5.53583
5.56438 5.66686 5.74331 5.86351 5.94622 6.14144 6.26717 6.31928
6.35968 6.57252 6.74365 6.79655 7.02240 7.20560 7.30987 7.61610
7.82026 7.84686 7.86481 8.05347 8.95239 9.56997 10.67826
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.017947 B = 0.002143 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.760033 B =13061.643500 C =13900.632669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.153 3.847
3 C -0.170 4.170
4 N -0.614 5.614
5 C 0.103 3.897
6 C -0.128 4.128
7 C 0.054 3.946
8 H 0.117 0.883
9 O -0.343 6.343
10 C 0.449 3.551
11 O -0.472 6.472
12 C -0.047 4.047
13 C -0.176 4.176
14 C -0.058 4.058
15 C -0.192 4.192
16 C 0.165 3.835
17 O -0.215 6.215
18 C -0.389 4.389
19 H 0.107 0.893
20 C 0.063 3.937
21 N -0.878 5.878
22 Si 0.906 3.094
23 H -0.273 1.273
24 H -0.282 1.282
25 H -0.259 1.259
26 C -0.219 4.219
27 C -0.052 4.052
28 C 0.506 3.494
29 O -0.498 6.498
30 H 0.072 0.928
31 H 0.056 0.944
32 H 0.068 0.932
33 H 0.089 0.911
34 H 0.068 0.932
35 H 0.057 0.943
36 H 0.072 0.928
37 H 0.077 0.923
38 H 0.082 0.918
39 H 0.101 0.899
40 H 0.106 0.894
41 H 0.105 0.895
42 H 0.106 0.894
43 H 0.112 0.888
44 H 0.118 0.882
45 H 0.280 0.720
46 H 0.134 0.866
47 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.608 -19.923 24.028 31.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.052 3.948
3 C -0.228 4.228
4 N -0.351 5.351
5 C -0.020 4.020
6 C -0.166 4.166
7 C -0.005 4.005
8 H 0.135 0.865
9 O -0.261 6.261
10 C 0.290 3.710
11 O -0.355 6.355
12 C -0.085 4.085
13 C -0.177 4.177
14 C -0.076 4.076
15 C -0.211 4.211
16 C 0.113 3.887
17 O -0.120 6.120
18 C -0.465 4.465
19 H 0.124 0.876
20 C -0.140 4.140
21 N -0.516 5.516
22 Si 0.731 3.269
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.183 1.183
26 C -0.238 4.238
27 C -0.071 4.071
28 C 0.291 3.709
29 O -0.371 6.371
30 H 0.091 0.909
31 H 0.075 0.925
32 H 0.087 0.913
33 H 0.107 0.893
34 H 0.087 0.913
35 H 0.076 0.924
36 H 0.091 0.909
37 H 0.096 0.904
38 H 0.101 0.899
39 H 0.119 0.881
40 H 0.125 0.875
41 H 0.123 0.877
42 H 0.124 0.876
43 H 0.130 0.870
44 H 0.136 0.864
45 H 0.090 0.910
46 H 0.152 0.848
47 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 4.742 -19.183 23.410 30.635
hybrid contribution -0.303 -0.131 -0.534 0.628
sum 4.440 -19.314 22.875 30.266
Atomic orbital electron populations
1.22200 0.94555 1.02378 1.03600 1.20972 0.94567 0.93278 0.86008
1.22199 1.01386 0.95663 1.03552 1.48440 1.50919 1.29710 1.06030
1.22174 0.95434 0.86562 0.97808 1.22794 1.05170 0.95388 0.93242
1.23307 0.88006 0.92987 0.96189 0.86529 1.86634 1.35521 1.63725
1.40204 1.24341 0.92268 0.76304 0.78043 1.90751 1.28088 1.55298
1.61360 1.20103 0.92944 0.99800 0.95643 1.18685 1.11586 0.94895
0.92554 1.20415 0.97782 0.97960 0.91485 1.20144 1.09394 0.92837
0.98740 1.19143 0.92243 0.91119 0.86202 1.83568 1.71027 1.29191
1.28216 1.20790 1.39786 0.86931 0.98976 0.87557 1.24479 0.95069
0.95109 0.99354 1.69647 1.39064 1.10628 1.32269 0.86174 0.79736
0.79252 0.81696 1.19851 1.20768 1.18341 1.21232 1.08504 1.01895
0.92211 1.20602 0.95737 0.93438 0.97292 1.20946 0.80640 0.85464
0.83841 1.90776 1.37977 1.27263 1.81106 0.90870 0.92478 0.91285
0.89315 0.91314 0.92364 0.90861 0.90433 0.89934 0.88095 0.87539
0.87716 0.87572 0.86976 0.86387 0.91028 0.84817 0.87355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.36 9.20 37.16 0.34 -1.02 16
2 C 0.15 1.18 3.47 -67.93 -0.24 0.94 16
3 C -0.17 -1.48 9.20 37.16 0.34 -1.14 16
4 N -0.61 -5.44 2.83 -164.73 -0.47 -5.90 16
5 C 0.10 0.53 7.31 -3.03 -0.02 0.51 16
6 C -0.13 -0.70 6.93 -25.00 -0.17 -0.88 16
7 C 0.05 0.59 3.22 -26.74 -0.09 0.50 16
8 H 0.12 1.41 7.26 -51.93 -0.38 1.03 16
9 O -0.34 -4.13 9.95 -39.25 -0.39 -4.52 16
10 C 0.45 6.64 7.94 36.00 0.29 6.92 16
11 O -0.47 -9.03 15.30 -18.75 -0.29 -9.31 16
12 C -0.05 -0.60 5.94 -29.04 -0.17 -0.78 16
13 C -0.18 -3.01 4.38 -104.58 -0.46 -3.47 16
14 C -0.06 -1.01 9.69 -39.60 -0.38 -1.40 16
15 C -0.19 -3.92 9.99 -39.40 -0.39 -4.32 16
16 C 0.17 3.96 6.65 -39.11 -0.26 3.70 16
17 O -0.22 -5.84 8.59 0.04 0.00 -5.84 16
18 C -0.39 -11.26 9.95 30.89 0.31 -10.96 16
19 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16
20 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16
21 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16
22 Si 0.91 22.10 28.62 -169.99 -4.86 17.24 16
23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
25 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16
26 C -0.22 -4.97 9.17 -39.39 -0.36 -5.33 16
27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16
28 C 0.51 6.48 7.10 -10.86 -0.08 6.40 16
29 O -0.50 -8.66 15.12 5.56 0.08 -8.58 16
30 H 0.07 0.83 6.80 -51.93 -0.35 0.47 16
31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
33 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16
34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16
37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16
39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.11 0.43 8.11 -51.93 -0.42 0.01 16
41 H 0.10 1.13 8.08 -51.92 -0.42 0.71 16
42 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16
43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16
44 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16
45 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16
46 H 0.13 3.17 5.64 -52.49 -0.30 2.88 16
47 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16
LS Contribution 394.72 15.07 5.95 5.95
Total: -1.00 -36.08 394.72 -7.73 -43.81
By element:
Atomic # 1 Polarization: 8.96 SS G_CDS: -6.71 Total: 2.25 kcal
Atomic # 6 Polarization: -8.15 SS G_CDS: -1.83 Total: -9.98 kcal
Atomic # 7 Polarization: -31.33 SS G_CDS: 0.31 Total: -31.03 kcal
Atomic # 8 Polarization: -27.65 SS G_CDS: -0.59 Total: -28.24 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.24 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -36.08 -7.73 -43.81 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000746982553.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.170 kcal
(2) G-P(sol) polarization free energy of solvation -36.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds