Wall clock time and date at job start Wed Apr 1 2020 04:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47562 * 2 1 4 4 N 1.46503 * 109.46442 * 240.00063 * 2 1 3 5 5 C 1.46766 * 124.34575 * 239.72277 * 4 2 1 6 6 C 1.54656 * 105.38041 * 162.85790 * 5 4 2 7 7 C 1.54630 * 101.68418 * 25.77104 * 6 5 4 8 8 H 1.09005 * 110.60140 * 216.25191 * 7 6 5 9 9 O 1.45206 * 110.48826 * 93.66290 * 7 6 5 10 10 C 1.34228 * 117.00014 * 153.77029 * 9 7 6 11 11 O 1.20827 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00184 * 180.02562 * 10 9 7 13 13 C 1.50692 * 109.47397 * 180.02562 * 12 10 9 14 14 C 1.38312 * 119.92962 * 269.72764 * 13 12 10 15 15 C 1.38100 * 120.06710 * 179.72524 * 14 13 12 16 16 C 1.38873 * 119.93023 * 0.52300 * 15 14 13 17 17 O 1.35755 * 120.06834 * 179.72465 * 16 15 14 18 18 C 1.34828 * 117.00125 * 174.48664 * 17 16 15 19 19 H 1.07993 * 120.00101 * 5.05743 * 18 17 16 20 20 C 1.38658 * 120.00060 * 185.06184 * 18 17 16 21 21 N 1.31553 * 120.00125 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47038 * 90.00581 * 22 20 18 24 24 H 1.48502 * 109.46772 * 210.00328 * 22 20 18 25 25 H 1.48501 * 109.47177 * 330.00233 * 22 20 18 26 26 C 1.38881 * 119.86519 * 359.74965 * 16 15 14 27 27 C 1.38100 * 119.92753 * 0.02562 * 26 16 15 28 28 C 1.34419 * 124.35366 * 60.03364 * 4 2 1 29 29 O 1.21279 * 124.93646 * 0.41736 * 28 4 2 30 30 H 1.09003 * 109.46754 * 59.99640 * 1 2 3 31 31 H 1.08993 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46525 * 300.00147 * 1 2 3 33 33 H 1.08993 * 109.46746 * 120.00357 * 2 1 3 34 34 H 1.09003 * 109.46961 * 60.00025 * 3 2 1 35 35 H 1.08996 * 109.47211 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47109 * 300.00454 * 3 2 1 37 37 H 1.08999 * 110.25009 * 281.98686 * 5 4 2 38 38 H 1.09001 * 110.24767 * 43.99144 * 5 4 2 39 39 H 1.08999 * 111.19491 * 267.59671 * 6 5 4 40 40 H 1.09005 * 110.82008 * 143.77555 * 6 5 4 41 41 H 1.09008 * 109.46960 * 300.00412 * 12 10 9 42 42 H 1.08999 * 109.46893 * 59.99961 * 12 10 9 43 43 H 1.08001 * 119.96277 * 359.97285 * 14 13 12 44 44 H 1.07998 * 120.02851 * 180.26560 * 15 14 13 45 45 H 0.97001 * 120.00216 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.03525 * 179.97438 * 26 16 15 47 47 H 1.08001 * 119.96329 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.8702 -1.8855 -1.1728 6 6 2.7603 -2.4955 -2.5898 7 6 2.4040 -1.2531 -3.4387 8 1 1.7082 -1.5191 -4.2345 9 8 3.6052 -0.6557 -3.9943 10 6 3.4678 0.0442 -5.1314 11 8 2.3798 0.1544 -5.6453 12 6 4.6705 0.6925 -5.7672 13 6 4.2488 1.4117 -7.0225 14 6 4.2607 0.7473 -8.2355 15 6 3.8694 1.4019 -9.3868 16 6 3.4739 2.7318 -9.3273 17 8 3.0940 3.3796 -10.4582 18 6 2.6139 4.6314 -10.3147 19 1 2.6215 5.1046 -9.3440 20 6 2.1104 5.3110 -11.4134 21 7 1.6424 6.5325 -11.2735 22 14 2.0979 4.4926 -13.0926 23 1 0.8211 3.7567 -13.2751 24 1 2.2277 5.5283 -14.1489 25 1 3.2350 3.5424 -13.1886 26 6 3.4684 3.3978 -8.1087 27 6 3.8565 2.7363 -6.9602 28 6 1.7484 -0.3080 -2.4563 29 8 1.0771 0.6551 -2.7610 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.9022 -1.6088 -0.9573 38 1 2.5057 -2.5941 -0.4291 39 1 1.9667 -3.2411 -2.6374 40 1 3.7134 -2.9217 -2.9031 41 1 5.1096 1.4063 -5.0700 42 1 5.4065 -0.0721 -6.0158 43 1 4.5726 -0.2857 -8.2817 44 1 3.8748 0.8812 -10.3330 45 1 1.2905 7.0081 -12.0422 46 1 3.1618 4.4322 -8.0593 47 1 3.8520 3.2536 -6.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746982553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:32 Heat of formation + Delta-G solvation = -112.978108 kcal Electronic energy + Delta-G solvation = -30030.515661 eV Core-core repulsion = 25758.643937 eV Total energy + Delta-G solvation = -4271.871724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32906 -39.98707 -39.06618 -37.11364 -36.74942 -36.25053 -34.75573 -32.53281 -31.72469 -30.24692 -30.10665 -27.93469 -27.51633 -26.90633 -25.00153 -22.98931 -22.60069 -22.10611 -21.62818 -20.22178 -19.25138 -17.97102 -17.87910 -17.44932 -17.23927 -16.30615 -16.27354 -15.76544 -15.56343 -14.90804 -14.72328 -14.33489 -14.20703 -14.06141 -13.92243 -13.76357 -13.67889 -13.47585 -13.40838 -12.98155 -12.75543 -12.60693 -12.40866 -12.31132 -12.20130 -12.10048 -11.96220 -11.66977 -11.60885 -11.47731 -11.31573 -11.27217 -10.97260 -10.76445 -10.67345 -10.30819 -10.14205 -9.69277 -9.36931 -9.08178 -8.84908 -8.23587 -7.33080 -6.39734 -4.06136 1.78648 2.16615 2.20452 2.32114 2.55204 2.99076 3.23932 3.28192 3.41990 3.87124 3.93226 4.25589 4.31271 4.41626 4.53642 4.57713 4.71981 4.80966 4.81623 4.86141 4.97706 5.05568 5.12291 5.18061 5.23167 5.28355 5.30404 5.32713 5.43877 5.48276 5.53583 5.56438 5.66686 5.74331 5.86351 5.94622 6.14144 6.26717 6.31928 6.35968 6.57252 6.74365 6.79655 7.02240 7.20560 7.30987 7.61610 7.82026 7.84686 7.86481 8.05347 8.95239 9.56997 10.67826 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002143 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.760033 B =13061.643500 C =13900.632669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.153 3.847 3 C -0.170 4.170 4 N -0.614 5.614 5 C 0.103 3.897 6 C -0.128 4.128 7 C 0.054 3.946 8 H 0.117 0.883 9 O -0.343 6.343 10 C 0.449 3.551 11 O -0.472 6.472 12 C -0.047 4.047 13 C -0.176 4.176 14 C -0.058 4.058 15 C -0.192 4.192 16 C 0.165 3.835 17 O -0.215 6.215 18 C -0.389 4.389 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.219 4.219 27 C -0.052 4.052 28 C 0.506 3.494 29 O -0.498 6.498 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.280 0.720 46 H 0.134 0.866 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -19.923 24.028 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 C -0.228 4.228 4 N -0.351 5.351 5 C -0.020 4.020 6 C -0.166 4.166 7 C -0.005 4.005 8 H 0.135 0.865 9 O -0.261 6.261 10 C 0.290 3.710 11 O -0.355 6.355 12 C -0.085 4.085 13 C -0.177 4.177 14 C -0.076 4.076 15 C -0.211 4.211 16 C 0.113 3.887 17 O -0.120 6.120 18 C -0.465 4.465 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.238 4.238 27 C -0.071 4.071 28 C 0.291 3.709 29 O -0.371 6.371 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.090 0.910 46 H 0.152 0.848 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.742 -19.183 23.410 30.635 hybrid contribution -0.303 -0.131 -0.534 0.628 sum 4.440 -19.314 22.875 30.266 Atomic orbital electron populations 1.22200 0.94555 1.02378 1.03600 1.20972 0.94567 0.93278 0.86008 1.22199 1.01386 0.95663 1.03552 1.48440 1.50919 1.29710 1.06030 1.22174 0.95434 0.86562 0.97808 1.22794 1.05170 0.95388 0.93242 1.23307 0.88006 0.92987 0.96189 0.86529 1.86634 1.35521 1.63725 1.40204 1.24341 0.92268 0.76304 0.78043 1.90751 1.28088 1.55298 1.61360 1.20103 0.92944 0.99800 0.95643 1.18685 1.11586 0.94895 0.92554 1.20415 0.97782 0.97960 0.91485 1.20144 1.09394 0.92837 0.98740 1.19143 0.92243 0.91119 0.86202 1.83568 1.71027 1.29191 1.28216 1.20790 1.39786 0.86931 0.98976 0.87557 1.24479 0.95069 0.95109 0.99354 1.69647 1.39064 1.10628 1.32269 0.86174 0.79736 0.79252 0.81696 1.19851 1.20768 1.18341 1.21232 1.08504 1.01895 0.92211 1.20602 0.95737 0.93438 0.97292 1.20946 0.80640 0.85464 0.83841 1.90776 1.37977 1.27263 1.81106 0.90870 0.92478 0.91285 0.89315 0.91314 0.92364 0.90861 0.90433 0.89934 0.88095 0.87539 0.87716 0.87572 0.86976 0.86387 0.91028 0.84817 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.20 37.16 0.34 -1.02 16 2 C 0.15 1.18 3.47 -67.93 -0.24 0.94 16 3 C -0.17 -1.48 9.20 37.16 0.34 -1.14 16 4 N -0.61 -5.44 2.83 -164.73 -0.47 -5.90 16 5 C 0.10 0.53 7.31 -3.03 -0.02 0.51 16 6 C -0.13 -0.70 6.93 -25.00 -0.17 -0.88 16 7 C 0.05 0.59 3.22 -26.74 -0.09 0.50 16 8 H 0.12 1.41 7.26 -51.93 -0.38 1.03 16 9 O -0.34 -4.13 9.95 -39.25 -0.39 -4.52 16 10 C 0.45 6.64 7.94 36.00 0.29 6.92 16 11 O -0.47 -9.03 15.30 -18.75 -0.29 -9.31 16 12 C -0.05 -0.60 5.94 -29.04 -0.17 -0.78 16 13 C -0.18 -3.01 4.38 -104.58 -0.46 -3.47 16 14 C -0.06 -1.01 9.69 -39.60 -0.38 -1.40 16 15 C -0.19 -3.92 9.99 -39.40 -0.39 -4.32 16 16 C 0.17 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.22 -5.84 8.59 0.04 0.00 -5.84 16 18 C -0.39 -11.26 9.95 30.89 0.31 -10.96 16 19 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16 20 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 21 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 22 Si 0.91 22.10 28.62 -169.99 -4.86 17.24 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.22 -4.97 9.17 -39.39 -0.36 -5.33 16 27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 28 C 0.51 6.48 7.10 -10.86 -0.08 6.40 16 29 O -0.50 -8.66 15.12 5.56 0.08 -8.58 16 30 H 0.07 0.83 6.80 -51.93 -0.35 0.47 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 0.43 8.11 -51.93 -0.42 0.01 16 41 H 0.10 1.13 8.08 -51.92 -0.42 0.71 16 42 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.13 3.17 5.64 -52.49 -0.30 2.88 16 47 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -36.08 394.72 -7.73 -43.81 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.71 Total: 2.25 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.83 Total: -9.98 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.31 Total: -31.03 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.59 Total: -28.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.08 -7.73 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746982553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.170 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds