Wall clock time and date at job start Wed Apr 1 2020 04:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47562 * 2 1 4 4 N 1.46503 * 109.46442 * 240.00063 * 2 1 3 5 5 C 1.46766 * 124.34575 * 239.72277 * 4 2 1 6 6 C 1.54656 * 105.38041 * 162.85790 * 5 4 2 7 7 C 1.54630 * 101.68418 * 25.77104 * 6 5 4 8 8 H 1.09005 * 110.60140 * 216.25191 * 7 6 5 9 9 O 1.45206 * 110.48826 * 93.66290 * 7 6 5 10 10 C 1.34228 * 117.00014 * 153.77029 * 9 7 6 11 11 O 1.20827 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00184 * 180.02562 * 10 9 7 13 13 C 1.50692 * 109.47397 * 180.02562 * 12 10 9 14 14 C 1.38312 * 119.92962 * 269.72764 * 13 12 10 15 15 C 1.38100 * 120.06710 * 179.72524 * 14 13 12 16 16 C 1.38873 * 119.93023 * 0.52300 * 15 14 13 17 17 O 1.35755 * 120.06834 * 179.72465 * 16 15 14 18 18 C 1.34828 * 117.00125 * 174.48664 * 17 16 15 19 19 H 1.07993 * 120.00101 * 5.05743 * 18 17 16 20 20 C 1.38658 * 120.00060 * 185.06184 * 18 17 16 21 21 N 1.31553 * 120.00125 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47038 * 90.00581 * 22 20 18 24 24 H 1.48502 * 109.46772 * 210.00328 * 22 20 18 25 25 H 1.48501 * 109.47177 * 330.00233 * 22 20 18 26 26 C 1.38881 * 119.86519 * 359.74965 * 16 15 14 27 27 C 1.38100 * 119.92753 * 0.02562 * 26 16 15 28 28 C 1.34419 * 124.35366 * 60.03364 * 4 2 1 29 29 O 1.21279 * 124.93646 * 0.41736 * 28 4 2 30 30 H 1.09003 * 109.46754 * 59.99640 * 1 2 3 31 31 H 1.08993 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46525 * 300.00147 * 1 2 3 33 33 H 1.08993 * 109.46746 * 120.00357 * 2 1 3 34 34 H 1.09003 * 109.46961 * 60.00025 * 3 2 1 35 35 H 1.08996 * 109.47211 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47109 * 300.00454 * 3 2 1 37 37 H 1.08999 * 110.25009 * 281.98686 * 5 4 2 38 38 H 1.09001 * 110.24767 * 43.99144 * 5 4 2 39 39 H 1.08999 * 111.19491 * 267.59671 * 6 5 4 40 40 H 1.09005 * 110.82008 * 143.77555 * 6 5 4 41 41 H 1.09008 * 109.46960 * 300.00412 * 12 10 9 42 42 H 1.08999 * 109.46893 * 59.99961 * 12 10 9 43 43 H 1.08001 * 119.96277 * 359.97285 * 14 13 12 44 44 H 1.07998 * 120.02851 * 180.26560 * 15 14 13 45 45 H 0.97001 * 120.00216 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.03525 * 179.97438 * 26 16 15 47 47 H 1.08001 * 119.96329 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.8702 -1.8855 -1.1728 6 6 2.7603 -2.4955 -2.5898 7 6 2.4040 -1.2531 -3.4387 8 1 1.7082 -1.5191 -4.2345 9 8 3.6052 -0.6557 -3.9943 10 6 3.4678 0.0442 -5.1314 11 8 2.3798 0.1544 -5.6453 12 6 4.6705 0.6925 -5.7672 13 6 4.2488 1.4117 -7.0225 14 6 4.2607 0.7473 -8.2355 15 6 3.8694 1.4019 -9.3868 16 6 3.4739 2.7318 -9.3273 17 8 3.0940 3.3796 -10.4582 18 6 2.6139 4.6314 -10.3147 19 1 2.6215 5.1046 -9.3440 20 6 2.1104 5.3110 -11.4134 21 7 1.6424 6.5325 -11.2735 22 14 2.0979 4.4926 -13.0926 23 1 0.8211 3.7567 -13.2751 24 1 2.2277 5.5283 -14.1489 25 1 3.2350 3.5424 -13.1886 26 6 3.4684 3.3978 -8.1087 27 6 3.8565 2.7363 -6.9602 28 6 1.7484 -0.3080 -2.4563 29 8 1.0771 0.6551 -2.7610 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.9022 -1.6088 -0.9573 38 1 2.5057 -2.5941 -0.4291 39 1 1.9667 -3.2411 -2.6374 40 1 3.7134 -2.9217 -2.9031 41 1 5.1096 1.4063 -5.0700 42 1 5.4065 -0.0721 -6.0158 43 1 4.5726 -0.2857 -8.2817 44 1 3.8748 0.8812 -10.3330 45 1 1.2905 7.0081 -12.0422 46 1 3.1618 4.4322 -8.0593 47 1 3.8520 3.2536 -6.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746982553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:31 Heat of formation + Delta-G solvation = -136.302358 kcal Electronic energy + Delta-G solvation = -30031.527076 eV Core-core repulsion = 25758.643937 eV Total energy + Delta-G solvation = -4272.883139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23801 -41.17006 -40.66185 -38.61939 -37.76925 -37.40213 -35.45966 -34.56661 -33.20457 -31.87325 -30.82339 -28.97524 -28.19259 -28.14581 -26.89551 -23.89336 -23.72796 -23.32107 -22.66563 -21.65686 -20.09100 -19.86205 -19.16579 -18.99292 -18.25427 -17.37691 -17.16298 -16.74442 -16.60784 -16.37681 -16.08996 -15.77565 -15.68835 -15.29657 -15.17696 -14.89317 -14.74870 -14.42746 -14.37325 -14.29315 -14.20419 -14.10821 -13.75690 -13.14912 -13.10051 -13.06956 -12.93533 -12.77134 -12.64563 -12.54494 -12.46629 -12.40398 -12.29464 -12.13664 -12.02894 -11.95612 -11.53481 -11.33361 -10.93330 -10.61713 -9.84697 -9.78530 -9.07718 -8.53397 -6.26822 0.45228 0.53280 1.00116 1.21153 1.28583 1.33960 1.50066 1.82625 2.03556 2.25790 2.74120 2.99999 3.13286 3.15568 3.36073 3.63384 3.76923 3.90735 3.95614 3.99402 4.04878 4.09887 4.10475 4.24761 4.37035 4.47739 4.51357 4.61812 4.62416 4.64527 4.74817 4.77494 4.80806 4.83656 4.90048 4.93332 5.05135 5.17796 5.18476 5.23964 5.29442 5.35800 5.50391 5.63516 5.65856 5.74422 5.86662 6.02351 6.19101 6.72598 6.80193 7.00732 7.53127 8.58523 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002143 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.760033 B =13061.643500 C =13900.632669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 C -0.168 4.168 4 N -0.604 5.604 5 C 0.097 3.903 6 C -0.113 4.113 7 C 0.044 3.956 8 H 0.096 0.904 9 O -0.329 6.329 10 C 0.454 3.546 11 O -0.527 6.527 12 C -0.046 4.046 13 C -0.152 4.152 14 C -0.050 4.050 15 C -0.192 4.192 16 C 0.123 3.877 17 O -0.242 6.242 18 C -0.403 4.403 19 H 0.077 0.923 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.241 4.241 27 C -0.063 4.063 28 C 0.490 3.510 29 O -0.563 6.563 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.135 0.865 45 H 0.286 0.714 46 H 0.105 0.895 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.212 -24.882 26.675 37.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 C -0.225 4.225 4 N -0.339 5.339 5 C -0.024 4.024 6 C -0.150 4.150 7 C -0.015 4.015 8 H 0.114 0.886 9 O -0.245 6.245 10 C 0.297 3.703 11 O -0.414 6.414 12 C -0.083 4.083 13 C -0.153 4.153 14 C -0.068 4.068 15 C -0.211 4.211 16 C 0.074 3.926 17 O -0.149 6.149 18 C -0.479 4.479 19 H 0.094 0.906 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.796 3.204 23 H -0.192 1.192 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.260 4.260 27 C -0.081 4.081 28 C 0.275 3.725 29 O -0.441 6.441 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.181 0.819 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.123 0.877 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.410 -24.213 26.149 36.400 hybrid contribution -1.016 1.183 -0.929 1.815 sum 6.394 -23.030 25.220 34.746 Atomic orbital electron populations 1.22165 0.95194 1.02664 1.02366 1.21218 0.94183 0.92993 0.86947 1.22173 1.01572 0.96503 1.02301 1.48644 1.49974 1.30272 1.05020 1.22575 0.95769 0.85572 0.98512 1.22945 1.07145 0.93082 0.91834 1.23603 0.87342 0.94636 0.95909 0.88612 1.86608 1.35959 1.63035 1.38916 1.24620 0.91818 0.75588 0.78251 1.90763 1.30211 1.57379 1.63033 1.20274 0.92939 1.01330 0.93720 1.19239 1.07387 0.93784 0.94860 1.21009 0.95723 0.99935 0.90148 1.20549 1.08316 0.91293 1.00901 1.19721 0.94104 0.92824 0.85963 1.83506 1.73450 1.28359 1.29609 1.20704 1.40713 0.88208 0.98259 0.90575 1.25354 0.94705 0.95718 1.03243 1.69736 1.40930 1.12102 1.33684 0.85165 0.79664 0.78493 0.77038 1.19249 1.18824 1.18349 1.21228 1.09986 1.01122 0.93666 1.20898 0.95578 0.94952 0.96714 1.21430 0.80301 0.85071 0.85652 1.90745 1.40916 1.30099 1.82338 0.95129 0.91373 0.89494 0.84930 0.89431 0.91874 0.95258 0.88806 0.86248 0.85998 0.85088 0.85075 0.82548 0.81906 0.84754 0.90475 0.87735 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.20 71.98 0.66 -1.86 16 2 C 0.15 1.91 3.47 44.99 0.16 2.07 16 3 C -0.17 -2.78 9.20 71.98 0.66 -2.12 16 4 N -0.60 -9.25 2.83 -793.69 -2.25 -11.50 16 5 C 0.10 0.51 7.31 86.89 0.64 1.15 16 6 C -0.11 -0.73 6.93 31.71 0.22 -0.51 16 7 C 0.04 0.88 3.22 30.59 0.10 0.98 16 8 H 0.10 2.32 7.26 -2.38 -0.02 2.30 16 9 O -0.33 -6.97 9.95 -51.39 -0.51 -7.48 16 10 C 0.45 12.34 7.94 71.24 0.57 12.90 16 11 O -0.53 -20.03 15.30 21.96 0.34 -19.69 16 12 C -0.05 -0.97 5.94 29.10 0.17 -0.79 16 13 C -0.15 -4.81 4.38 -19.84 -0.09 -4.90 16 14 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16 15 C -0.19 -7.67 9.99 22.39 0.22 -7.45 16 16 C 0.12 6.15 6.65 22.58 0.15 6.30 16 17 O -0.24 -13.85 8.59 -22.77 -0.20 -14.04 16 18 C -0.40 -25.07 9.95 67.92 0.68 -24.40 16 19 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 20 C 0.01 0.49 5.49 84.84 0.47 0.95 16 21 N -0.92 -57.53 13.96 21.61 0.30 -57.23 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.16 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 26 C -0.24 -11.64 9.17 22.39 0.21 -11.44 16 27 C -0.06 -2.46 9.69 22.25 0.22 -2.25 16 28 C 0.49 12.45 7.10 87.90 0.62 13.08 16 29 O -0.56 -20.96 15.12 -3.03 -0.05 -21.01 16 30 H 0.03 0.73 6.80 -2.39 -0.02 0.72 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.13 0.64 8.07 -2.39 -0.02 0.62 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 0.75 6.77 -2.39 -0.02 0.73 16 37 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.13 0.29 8.11 -2.38 -0.02 0.27 16 41 H 0.13 2.21 8.08 -2.38 -0.02 2.19 16 42 H 0.16 1.86 8.08 -2.39 -0.02 1.84 16 43 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.29 16.23 8.31 -92.71 -0.77 15.46 16 46 H 0.10 5.57 5.64 -2.91 -0.02 5.55 16 47 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -90.94 394.72 6.45 -84.49 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.98 Total: 16.97 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.86 Total: -19.66 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.94 Total: -68.73 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.42 Total: -62.23 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.16 kcal Total: -90.94 6.45 -84.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746982553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.808 kcal (2) G-P(sol) polarization free energy of solvation -90.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds