Wall clock time and date at job start Wed Apr 1 2020 04:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 N 1.46501 * 109.46879 * 119.99657 * 2 1 3 5 5 C 1.46764 * 124.34842 * 120.00424 * 4 2 1 6 6 C 1.54482 * 105.47513 * 162.96348 * 5 4 2 7 7 C 1.54621 * 101.76513 * 25.41254 * 6 5 4 8 8 H 1.09000 * 110.48518 * 94.01396 * 7 6 5 9 9 O 1.45197 * 110.48895 * 216.52543 * 7 6 5 10 10 C 1.34226 * 117.00280 * 210.00134 * 9 7 6 11 11 O 1.20834 * 120.00060 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00253 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47396 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93240 * 269.73011 * 13 12 10 15 15 C 1.38106 * 120.06905 * 180.27764 * 14 13 12 16 16 C 1.38880 * 119.92768 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06255 * 180.02562 * 16 15 14 18 18 C 1.34823 * 116.99547 * 174.44487 * 17 16 15 19 19 H 1.07999 * 120.00661 * 5.04963 * 18 17 16 20 20 C 1.38655 * 119.99715 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99953 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47004 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47194 * 119.99560 * 22 20 18 25 25 H 1.48498 * 109.47442 * 239.99965 * 22 20 18 26 26 C 1.38872 * 119.86682 * 359.97438 * 16 15 14 27 27 C 1.38101 * 119.92866 * 0.02562 * 26 16 15 28 28 C 1.34420 * 124.35257 * 299.97739 * 4 2 1 29 29 O 1.21280 * 124.93983 * 0.43050 * 28 4 2 30 30 H 1.09001 * 109.47454 * 300.00150 * 1 2 3 31 31 H 1.09005 * 109.47079 * 60.00262 * 1 2 3 32 32 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47454 * 239.99850 * 2 1 3 34 34 H 1.08992 * 109.47243 * 299.99805 * 3 2 1 35 35 H 1.09003 * 109.46710 * 59.99964 * 3 2 1 36 36 H 1.08999 * 109.46791 * 179.97438 * 3 2 1 37 37 H 1.09000 * 110.24639 * 43.96161 * 5 4 2 38 38 H 1.09000 * 110.31969 * 282.00575 * 5 4 2 39 39 H 1.09005 * 110.96441 * 267.29512 * 6 5 4 40 40 H 1.09002 * 110.96839 * 143.53809 * 6 5 4 41 41 H 1.08997 * 109.47077 * 60.00185 * 12 10 9 42 42 H 1.08998 * 109.47344 * 299.99962 * 12 10 9 43 43 H 1.07995 * 119.96238 * 0.27333 * 14 13 12 44 44 H 1.07996 * 120.02829 * 179.97438 * 15 14 13 45 45 H 0.97006 * 120.00126 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.03833 * 180.02562 * 26 16 15 47 47 H 1.08002 * 119.96311 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1729 6 6 3.4727 -1.9919 2.5896 7 6 2.4210 -1.2411 3.4388 8 1 1.6989 -1.9416 3.8583 9 8 3.0675 -0.4852 4.4965 10 6 2.3712 -0.3049 5.6298 11 8 1.2580 -0.7633 5.7344 12 6 2.9776 0.4691 6.7718 13 6 1.9984 0.5266 7.9158 14 6 1.0948 1.5703 7.9989 15 6 0.1999 1.6289 9.0492 16 6 0.2078 0.6379 10.0223 17 8 -0.6710 0.6925 11.0556 18 6 -0.6881 -0.3579 11.9006 19 1 0.0329 -1.1540 11.7873 20 6 -1.6315 -0.4163 12.9150 21 7 -2.5096 0.5535 13.0532 22 14 -1.6558 -1.8721 14.0853 23 1 -0.5730 -2.8200 13.7187 24 1 -1.4456 -1.3934 15.4752 25 1 -2.9682 -2.5605 13.9920 26 6 1.1156 -0.4094 9.9355 27 6 2.0079 -0.4623 8.8827 28 6 1.7483 -0.3080 2.4562 29 8 1.0648 0.6465 2.7610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.6562 -1.7772 0.4309 38 1 2.2658 -2.7722 0.9542 39 1 4.4405 -1.4925 2.6365 40 1 3.5567 -3.0324 2.9032 41 1 3.2099 1.4815 6.4417 42 1 3.8921 -0.0248 7.1004 43 1 1.0890 2.3403 7.2417 44 1 -0.5051 2.4444 9.1137 45 1 -3.1694 0.5128 13.7631 46 1 1.1239 -1.1816 10.6904 47 1 2.7145 -1.2763 8.8149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746982554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:35 Heat of formation + Delta-G solvation = -116.321435 kcal Electronic energy + Delta-G solvation = -29857.200573 eV Core-core repulsion = 25585.183871 eV Total energy + Delta-G solvation = -4272.016702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28779 -39.97092 -38.90355 -36.95762 -36.76201 -36.16402 -34.82061 -32.48960 -31.50738 -30.14462 -30.05976 -27.91400 -27.53397 -26.66991 -25.15364 -23.05209 -22.54264 -21.95580 -21.57612 -20.18971 -19.29653 -17.96486 -17.89138 -17.53069 -16.92869 -16.59687 -16.03938 -15.85085 -15.39254 -14.67872 -14.60970 -14.39593 -14.28759 -14.08554 -14.00166 -13.59369 -13.57124 -13.54367 -13.33587 -12.76834 -12.74413 -12.65779 -12.55917 -12.39974 -12.21698 -12.00824 -11.70633 -11.63313 -11.51356 -11.43737 -11.26924 -11.26040 -10.87116 -10.76749 -10.58347 -10.40282 -10.26073 -9.65903 -9.30315 -9.11992 -8.81253 -8.13072 -7.16911 -6.42790 -4.01197 1.90233 2.27747 2.29712 2.36803 2.53862 2.97551 3.14546 3.16156 3.21234 3.85976 3.95371 3.98735 4.32986 4.43272 4.53350 4.61038 4.68164 4.79100 4.83283 4.96211 5.04382 5.10699 5.25205 5.27506 5.28181 5.28893 5.31258 5.34040 5.42362 5.50135 5.51982 5.66913 5.73658 5.85119 5.88274 5.92228 6.24174 6.26232 6.40028 6.44548 6.71206 6.73264 6.93601 7.07769 7.26368 7.37276 7.46800 7.83454 7.85219 7.92728 8.02491 9.02808 9.73186 10.75279 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.001971 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.842166 B =14205.132852 C =14424.545550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.154 3.846 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.104 3.896 6 C -0.126 4.126 7 C 0.053 3.947 8 H 0.121 0.879 9 O -0.341 6.341 10 C 0.455 3.545 11 O -0.480 6.480 12 C -0.047 4.047 13 C -0.184 4.184 14 C -0.054 4.054 15 C -0.191 4.191 16 C 0.160 3.840 17 O -0.176 6.176 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.234 4.234 27 C -0.053 4.053 28 C 0.510 3.490 29 O -0.502 6.502 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.269 0.731 46 H 0.128 0.872 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.005 -5.312 -26.428 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 C -0.227 4.227 4 N -0.354 5.354 5 C -0.019 4.019 6 C -0.164 4.164 7 C -0.007 4.007 8 H 0.139 0.861 9 O -0.259 6.259 10 C 0.297 3.703 11 O -0.364 6.364 12 C -0.084 4.084 13 C -0.184 4.184 14 C -0.072 4.072 15 C -0.211 4.211 16 C 0.106 3.894 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.253 4.253 27 C -0.071 4.071 28 C 0.295 3.705 29 O -0.376 6.376 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.145 0.855 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.872 -4.683 -26.066 29.897 hybrid contribution -0.167 -0.970 0.426 1.073 sum 13.706 -5.653 -25.640 29.618 Atomic orbital electron populations 1.22210 0.94518 1.02519 1.03611 1.20976 0.94657 0.93197 0.85902 1.22193 1.01280 0.95682 1.03529 1.48340 1.51876 1.29188 1.06017 1.22124 0.94193 0.87881 0.97695 1.22769 0.99159 1.01966 0.92510 1.23282 0.96973 0.93669 0.86731 0.86108 1.86642 1.46765 1.68445 1.24003 1.24330 0.84940 0.78551 0.82483 1.90711 1.19419 1.45592 1.80681 1.20095 0.98624 1.00504 0.89191 1.18628 1.02487 0.99628 0.97706 1.20455 0.93700 0.96825 0.96257 1.20168 1.03667 1.01248 0.95968 1.19401 0.89254 0.92995 0.87789 1.83980 1.50563 1.41542 1.31870 1.21388 1.17073 0.99485 1.08751 0.88967 1.25306 0.94886 0.98647 0.97769 1.70052 1.16672 1.31350 1.31588 0.85637 0.78625 0.79726 0.79364 1.19094 1.20148 1.20148 1.21098 1.00300 1.02027 1.01878 1.20521 0.97122 0.96100 0.93396 1.20879 0.80647 0.85146 0.83814 1.90746 1.37743 1.27991 1.81088 0.90789 0.91298 0.92429 0.89294 0.91319 0.90873 0.92411 0.89632 0.90525 0.88249 0.88049 0.87706 0.87738 0.87116 0.86388 0.92068 0.85452 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.20 37.16 0.34 -1.07 16 2 C 0.15 1.14 3.48 -67.93 -0.24 0.91 16 3 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 4 N -0.62 -5.35 2.83 -164.84 -0.47 -5.81 16 5 C 0.10 0.51 7.30 -3.12 -0.02 0.48 16 6 C -0.13 -0.73 6.92 -25.10 -0.17 -0.90 16 7 C 0.05 0.58 3.29 -26.74 -0.09 0.49 16 8 H 0.12 1.45 7.14 -51.93 -0.37 1.08 16 9 O -0.34 -4.43 9.95 -42.14 -0.42 -4.85 16 10 C 0.46 7.08 7.95 36.00 0.29 7.36 16 11 O -0.48 -9.37 15.24 -18.76 -0.29 -9.65 16 12 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 13 C -0.18 -3.31 4.38 -104.57 -0.46 -3.77 16 14 C -0.05 -1.05 9.69 -39.61 -0.38 -1.43 16 15 C -0.19 -4.30 9.99 -39.39 -0.39 -4.70 16 16 C 0.16 4.03 6.65 -39.11 -0.26 3.77 16 17 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 18 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 22 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 28 C 0.51 6.48 7.10 -10.86 -0.08 6.41 16 29 O -0.50 -8.55 15.12 1.48 0.02 -8.53 16 30 H 0.07 0.86 6.77 -51.93 -0.35 0.51 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.81 6.80 -51.93 -0.35 0.46 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 42 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 43 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 44 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -36.95 395.74 -7.98 -44.93 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.69 Total: 3.43 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.84 Total: -11.19 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.29 Total: -30.80 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.68 Total: -28.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.95 -7.98 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746982554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.394 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds