Wall clock time and date at job start Wed Apr 1 2020 04:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47454 * 2 1 4 4 N 1.46507 * 109.46953 * 120.00275 * 2 1 3 5 5 C 1.45744 * 117.95036 * 119.99754 * 4 2 1 6 6 C 1.52918 * 110.49328 * 160.92257 * 5 4 2 7 7 C 1.53351 * 108.67153 * 50.75243 * 6 5 4 8 8 C 1.53072 * 108.42571 * 292.47236 * 7 6 5 9 9 H 1.08995 * 109.39868 * 288.77055 * 8 7 6 10 10 O 1.45198 * 109.40028 * 169.02483 * 8 7 6 11 11 C 1.34758 * 116.99620 * 149.99786 * 10 8 7 12 12 O 1.21510 * 120.00185 * 0.02562 * 11 10 8 13 13 C 1.47403 * 119.99707 * 180.02562 * 11 10 8 14 14 C 1.39723 * 120.20359 * 359.72386 * 13 11 10 15 15 C 1.37804 * 119.91494 * 179.78473 * 14 13 11 16 16 C 1.38593 * 120.32895 * 0.49512 * 15 14 13 17 17 C 1.38023 * 120.41315 * 359.73924 * 16 15 14 18 18 C 1.38834 * 120.07771 * 0.02562 * 17 16 15 19 19 O 1.35509 * 120.16300 * 179.97438 * 18 17 16 20 20 C 1.34813 * 117.00046 * 354.40383 * 19 18 17 21 21 H 1.08003 * 119.99996 * 5.06727 * 20 19 18 22 22 C 1.38699 * 119.99800 * 185.05795 * 20 19 18 23 23 N 1.31520 * 120.00129 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00232 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46729 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47114 * 120.00180 * 24 22 20 27 27 H 1.48499 * 109.47627 * 240.00634 * 24 22 20 28 28 C 1.33353 * 117.94442 * 299.99797 * 4 2 1 29 29 O 1.21285 * 118.24517 * 2.22291 * 28 4 2 30 30 H 1.09002 * 109.47186 * 299.99951 * 1 2 3 31 31 H 1.08997 * 109.46930 * 59.99918 * 1 2 3 32 32 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46959 * 239.99526 * 2 1 3 34 34 H 1.08996 * 109.47115 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47119 * 299.99966 * 3 2 1 36 36 H 1.09002 * 109.46884 * 59.99864 * 3 2 1 37 37 H 1.09005 * 109.30143 * 40.60978 * 5 4 2 38 38 H 1.09000 * 109.30551 * 281.24007 * 5 4 2 39 39 H 1.09000 * 109.60503 * 291.00514 * 6 5 4 40 40 H 1.08994 * 109.61115 * 170.51043 * 6 5 4 41 41 H 1.08998 * 109.67340 * 172.73976 * 7 6 5 42 42 H 1.08993 * 109.67212 * 52.20487 * 7 6 5 43 43 H 1.08005 * 120.04624 * 0.02562 * 14 13 11 44 44 H 1.07996 * 119.83882 * 180.21312 * 15 14 13 45 45 H 1.07999 * 119.79003 * 179.71491 * 16 15 14 46 46 H 1.07998 * 119.95914 * 179.97438 * 17 16 15 47 47 H 0.97000 * 119.99657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8528 -1.8711 1.0106 6 6 3.6412 -2.1751 2.2852 7 6 2.6683 -2.1984 3.4704 8 6 2.1400 -0.7788 3.6907 9 1 2.9359 -0.1555 4.0982 10 8 1.0315 -0.8166 4.6277 11 6 0.8470 0.2713 5.4013 12 8 1.5917 1.2255 5.2953 13 6 -0.2583 0.3036 6.3760 14 6 -1.1207 -0.7891 6.4973 15 6 -2.1493 -0.7543 7.4136 16 6 -2.3400 0.3641 8.2096 17 6 -1.4992 1.4530 8.0977 18 6 -0.4544 1.4343 7.1836 19 8 0.3718 2.5025 7.0719 20 6 0.0576 3.5973 7.7931 21 1 -0.7712 3.5686 8.4850 22 6 0.7987 4.7605 7.6465 23 7 1.8077 4.7955 6.8036 24 14 0.3630 6.2778 8.6452 25 1 -0.8045 5.9804 9.5133 26 1 1.5218 6.6640 9.4899 27 1 0.0257 7.3949 7.7269 28 6 1.6713 -0.2000 2.3866 29 8 0.9379 0.7655 2.4178 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.5485 -1.6951 0.1901 38 1 2.2206 -2.7245 0.7658 39 1 4.3923 -1.4014 2.4440 40 1 4.1271 -3.1462 2.1918 41 1 3.1885 -2.5394 4.3655 42 1 1.8377 -2.8690 3.2501 43 1 -0.9789 -1.6614 5.8765 44 1 -2.8130 -1.6009 7.5088 45 1 -3.1517 0.3839 8.9217 46 1 -1.6547 2.3209 8.7214 47 1 2.3258 5.6092 6.7009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748180481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:26 Heat of formation + Delta-G solvation = -134.548176 kcal Electronic energy + Delta-G solvation = -31648.493371 eV Core-core repulsion = 27375.686298 eV Total energy + Delta-G solvation = -4272.807072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26194 -41.28369 -40.27105 -38.16784 -37.68172 -37.48808 -35.78313 -34.40073 -32.51002 -31.88585 -30.67815 -30.23139 -28.17936 -27.49747 -25.90822 -24.87862 -24.24842 -23.29054 -22.14666 -21.87225 -19.95214 -19.80134 -19.28093 -18.59314 -18.14647 -17.61673 -17.08510 -16.63321 -16.41055 -16.29482 -16.11649 -15.67073 -15.57416 -15.30838 -15.24357 -14.96186 -14.83321 -14.58541 -14.43116 -14.22925 -13.97657 -13.60004 -13.36742 -13.12130 -13.07423 -12.84645 -12.74823 -12.68909 -12.59873 -12.53868 -12.37069 -12.29349 -12.19642 -12.11220 -11.86809 -11.75905 -11.60347 -11.07293 -10.89770 -10.38416 -9.95009 -9.74315 -9.14520 -8.50663 -6.22536 -0.06315 0.66014 1.16450 1.29721 1.41250 1.50764 1.66189 1.85438 2.03244 2.11916 2.79760 3.11680 3.33906 3.35468 3.56860 3.64592 3.80668 3.95736 3.97614 4.03881 4.06507 4.16779 4.25117 4.27798 4.44140 4.48535 4.55410 4.57972 4.67343 4.73712 4.78261 4.82769 4.87251 4.89997 4.96199 4.98983 5.02064 5.08800 5.18815 5.23756 5.31379 5.37519 5.44546 5.57916 5.62752 5.63726 5.90501 6.10013 6.38015 6.87261 6.95455 7.09922 7.69957 8.70049 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.003529 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.973458 B = 7932.729845 C = 9232.348769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.139 3.861 3 C -0.170 4.170 4 N -0.592 5.592 5 C 0.100 3.900 6 C -0.127 4.127 7 C -0.107 4.107 8 C 0.068 3.932 9 H 0.081 0.919 10 O -0.335 6.335 11 C 0.500 3.500 12 O -0.521 6.521 13 C -0.238 4.238 14 C -0.014 4.014 15 C -0.202 4.202 16 C -0.027 4.027 17 C -0.256 4.256 18 C 0.156 3.844 19 O -0.189 6.189 20 C -0.429 4.429 21 H 0.113 0.887 22 C -0.023 4.023 23 N -0.906 5.906 24 Si 1.026 2.974 25 H -0.241 1.241 26 H -0.266 1.266 27 H -0.271 1.271 28 C 0.493 3.507 29 O -0.571 6.571 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.132 0.868 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -19.633 -11.119 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.037 3.963 3 C -0.228 4.228 4 N -0.326 5.326 5 C -0.020 4.020 6 C -0.164 4.164 7 C -0.145 4.145 8 C 0.009 3.991 9 H 0.098 0.902 10 O -0.252 6.252 11 C 0.347 3.653 12 O -0.410 6.410 13 C -0.240 4.240 14 C -0.032 4.032 15 C -0.220 4.220 16 C -0.045 4.045 17 C -0.275 4.275 18 C 0.101 3.899 19 O -0.091 6.091 20 C -0.504 4.504 21 H 0.130 0.870 22 C -0.222 4.222 23 N -0.541 5.541 24 Si 0.844 3.156 25 H -0.164 1.164 26 H -0.191 1.191 27 H -0.196 1.196 28 C 0.280 3.720 29 O -0.450 6.450 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.157 0.843 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.172 0.828 44 H 0.186 0.814 45 H 0.181 0.819 46 H 0.150 0.850 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.239 -18.691 -11.360 21.873 hybrid contribution 0.326 1.697 0.443 1.784 sum 0.087 -16.993 -10.917 20.198 Atomic orbital electron populations 1.22175 0.95592 1.02302 1.02496 1.21267 0.94489 0.92958 0.87602 1.22180 1.01006 0.97337 1.02302 1.47626 1.50803 1.29710 1.04447 1.21932 0.94060 0.86403 0.99636 1.21962 0.97017 1.05797 0.91630 1.21858 1.00728 0.90179 1.01716 1.22814 0.88165 1.02250 0.85828 0.90163 1.86565 1.50260 1.40696 1.47693 1.21429 0.84327 0.80116 0.79437 1.90970 1.46397 1.36126 1.67526 1.18512 1.02754 0.98596 1.04179 1.21376 0.91325 0.94795 0.95726 1.21228 1.00857 1.00569 0.99356 1.21551 0.95996 0.90757 0.96147 1.21299 0.99361 1.02986 1.03822 1.19997 0.89734 0.87621 0.92588 1.84162 1.44594 1.20001 1.60378 1.22172 1.17933 0.88463 1.21829 0.86986 1.26874 0.94949 1.02155 0.98261 1.70344 1.18988 1.29416 1.35352 0.84452 0.79357 0.74551 0.77231 1.16391 1.19056 1.19582 1.20534 0.81125 0.83718 0.86618 1.90727 1.37886 1.28569 1.87825 0.94457 0.90240 0.91644 0.84856 0.92264 0.89929 0.95173 0.87387 0.88698 0.91589 0.84337 0.88510 0.88300 0.82806 0.81378 0.81872 0.85037 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 9.08 71.98 0.65 -3.58 16 2 C 0.14 3.09 3.21 44.99 0.14 3.24 16 3 C -0.17 -4.67 9.08 71.98 0.65 -4.02 16 4 N -0.59 -14.35 2.79 -802.65 -2.24 -16.59 16 5 C 0.10 1.21 6.25 86.49 0.54 1.75 16 6 C -0.13 -1.53 6.02 30.68 0.18 -1.34 16 7 C -0.11 -2.10 5.69 30.74 0.17 -1.93 16 8 C 0.07 2.38 2.70 29.71 0.08 2.47 16 9 H 0.08 3.30 7.16 -2.39 -0.02 3.28 16 10 O -0.33 -13.92 9.01 -51.16 -0.46 -14.38 16 11 C 0.50 26.30 7.34 70.24 0.52 26.82 16 12 O -0.52 -33.30 14.24 26.86 0.38 -32.91 16 13 C -0.24 -11.70 5.89 -20.00 -0.12 -11.82 16 14 C -0.01 -0.51 9.61 22.53 0.22 -0.30 16 15 C -0.20 -5.99 10.02 22.25 0.22 -5.76 16 16 C -0.03 -0.86 10.03 22.30 0.22 -0.64 16 17 C -0.26 -11.30 9.16 22.36 0.20 -11.10 16 18 C 0.16 8.53 6.66 22.92 0.15 8.68 16 19 O -0.19 -12.54 7.84 0.98 0.01 -12.54 16 20 C -0.43 -26.61 9.49 67.93 0.64 -25.97 16 21 H 0.11 6.17 5.21 -2.91 -0.02 6.15 16 22 C -0.02 -1.41 5.49 84.85 0.47 -0.94 16 23 N -0.91 -61.00 13.67 21.62 0.30 -60.71 16 24 Si 1.03 45.20 29.55 68.60 2.03 47.22 16 25 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.49 17.96 6.64 87.71 0.58 18.54 16 29 O -0.57 -27.63 11.56 12.80 0.15 -27.48 16 30 H 0.04 1.34 5.84 -2.39 -0.01 1.33 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.69 7.79 -2.39 -0.02 1.67 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.03 1.17 6.00 -2.39 -0.01 1.15 16 37 H 0.11 0.73 8.03 -2.38 -0.02 0.71 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 40 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 43 H 0.15 4.56 7.61 -2.91 -0.02 4.54 16 44 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 45 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.13 5.75 5.64 -2.91 -0.02 5.74 16 47 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16 Total: -1.00 -100.74 383.28 6.70 -94.04 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.99 Total: 29.22 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.54 Total: -5.89 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.94 Total: -77.29 kcal Atomic # 8 Polarization: -87.38 SS G_CDS: 0.08 Total: -87.30 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -100.74 6.70 -94.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748180481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.504 kcal (2) G-P(sol) polarization free energy of solvation -100.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds