Wall clock time and date at job start Wed Apr 1 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47736 * 2 1 4 4 N 1.46501 * 109.47406 * 120.00568 * 2 1 3 5 5 C 1.45750 * 117.95121 * 120.02106 * 4 2 1 6 6 C 1.52914 * 110.48731 * 199.05145 * 5 4 2 7 7 C 1.53337 * 108.68642 * 309.25709 * 6 5 4 8 8 C 1.53068 * 108.42576 * 67.52306 * 7 6 5 9 9 H 1.08998 * 109.40147 * 71.22206 * 8 7 6 10 10 O 1.45202 * 109.32976 * 191.01393 * 8 7 6 11 11 C 1.34753 * 116.99698 * 210.21203 * 10 8 7 12 12 O 1.21515 * 120.00331 * 359.97438 * 11 10 8 13 13 C 1.47399 * 120.00041 * 179.97438 * 11 10 8 14 14 C 1.39726 * 120.20338 * 0.02562 * 13 11 10 15 15 C 1.37800 * 119.91872 * 179.97438 * 14 13 11 16 16 C 1.38597 * 120.32940 * 359.96897 * 15 14 13 17 17 C 1.38028 * 120.41076 * 0.02931 * 16 15 14 18 18 C 1.38835 * 120.07728 * 359.73866 * 17 16 15 19 19 O 1.35503 * 120.16044 * 180.27888 * 18 17 16 20 20 C 1.34805 * 117.00294 * 354.40196 * 19 18 17 21 21 H 1.08001 * 120.00376 * 5.06977 * 20 19 18 22 22 C 1.38709 * 120.00323 * 185.06560 * 20 19 18 23 23 N 1.31521 * 119.99577 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00242 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46954 * 60.00093 * 24 22 20 26 26 H 1.48503 * 109.46583 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47052 * 299.99577 * 24 22 20 28 28 C 1.33362 * 117.94233 * 299.99399 * 4 2 1 29 29 O 1.21280 * 118.24663 * 357.80091 * 28 4 2 30 30 H 1.09000 * 109.47457 * 59.99777 * 1 2 3 31 31 H 1.08996 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46840 * 299.99626 * 1 2 3 33 33 H 1.09006 * 109.47214 * 240.00028 * 2 1 3 34 34 H 1.08997 * 109.47911 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46829 * 300.00607 * 3 2 1 36 36 H 1.09006 * 109.46746 * 59.99742 * 3 2 1 37 37 H 1.08998 * 109.29645 * 319.36291 * 5 4 2 38 38 H 1.08997 * 109.30427 * 78.73504 * 5 4 2 39 39 H 1.09005 * 109.60600 * 69.00270 * 6 5 4 40 40 H 1.09002 * 109.60649 * 189.32161 * 6 5 4 41 41 H 1.08995 * 109.67466 * 307.78272 * 7 6 5 42 42 H 1.09010 * 109.66665 * 187.25326 * 7 6 5 43 43 H 1.07999 * 120.04262 * 359.97438 * 14 13 11 44 44 H 1.07997 * 119.84030 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.79249 * 180.02562 * 16 15 14 46 46 H 1.07998 * 119.95705 * 179.97438 * 17 16 15 47 47 H 0.96995 * 119.99883 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8534 -1.8708 1.0104 6 6 2.8777 -2.7151 2.2850 7 6 3.2236 -1.8058 3.4702 8 6 2.0609 -0.8349 3.6906 9 1 1.2080 -1.3779 4.0979 10 8 2.4676 0.1974 4.6272 11 6 1.5053 0.7314 5.4048 12 8 0.3577 0.3453 5.3027 13 6 1.8448 1.7839 6.3793 14 6 3.1630 2.2314 6.5000 15 6 3.4737 3.2160 7.4126 16 6 2.4846 3.7663 8.2124 17 6 1.1781 3.3345 8.1045 18 6 0.8452 2.3468 7.1874 19 8 -0.4379 1.9256 7.0761 20 6 -1.3238 2.4208 7.9634 21 1 -1.0167 3.1814 8.6659 22 6 -2.6297 1.9535 7.9741 23 7 -3.0035 1.0269 7.1188 24 14 -3.8575 2.6402 9.2030 25 1 -4.0016 4.1033 8.9937 26 1 -5.1738 1.9808 9.0088 27 1 -3.3731 2.3828 10.5830 28 6 1.6714 -0.1999 2.3866 29 8 1.0053 0.8131 2.4178 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.4555 -2.4681 0.1901 38 1 3.8686 -1.5588 0.7654 39 1 1.8980 -3.1658 2.4440 40 1 3.6295 -3.4987 2.1904 41 1 4.1325 -1.2460 3.2502 42 1 3.3718 -2.4101 4.3653 43 1 3.9374 1.8062 5.8787 44 1 4.4931 3.5607 7.5051 45 1 2.7378 4.5378 8.9245 46 1 0.4133 3.7681 8.7317 47 1 -3.9169 0.7004 7.1260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748180483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:30 Heat of formation + Delta-G solvation = -109.920843 kcal Electronic energy + Delta-G solvation = -31622.467363 eV Core-core repulsion = 27350.728212 eV Total energy + Delta-G solvation = -4271.739151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95610 -39.59275 -38.53351 -36.51197 -36.38705 -35.88773 -34.55026 -32.36592 -31.14491 -30.56492 -29.16429 -28.90145 -27.12386 -25.46981 -24.66690 -23.59600 -22.96447 -21.55456 -21.15493 -20.23209 -18.62251 -18.02974 -17.54626 -17.19398 -16.63342 -16.19371 -15.78280 -15.25312 -14.94131 -14.63960 -14.41752 -14.25637 -14.19450 -13.86413 -13.75844 -13.68437 -13.60735 -13.27666 -13.02666 -12.79837 -12.51363 -12.27600 -11.98752 -11.78070 -11.71843 -11.67946 -11.47980 -11.35447 -11.23963 -11.09244 -10.94287 -10.90757 -10.87082 -10.73983 -10.60583 -10.47331 -9.69421 -9.20020 -9.06000 -8.88476 -8.70514 -8.27806 -7.33251 -6.46075 -4.06024 1.65979 2.35184 2.54285 2.86819 3.11560 3.14013 3.16225 3.41752 3.56353 3.92672 4.40619 4.48055 4.57354 4.62143 4.64198 4.94957 5.05576 5.07476 5.11427 5.17347 5.17772 5.21788 5.32384 5.48060 5.53212 5.58242 5.63600 5.68888 5.69725 5.75642 5.79605 5.84692 5.92938 5.95483 6.12402 6.16838 6.28641 6.42693 6.60938 6.66045 6.68393 6.91722 7.02416 7.13496 7.26735 7.34629 7.46410 7.69920 7.91794 8.30251 8.78756 8.93516 9.63560 10.67447 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003453 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.681955 B = 8106.873821 C = 9298.322737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 C -0.172 4.172 4 N -0.604 5.604 5 C 0.113 3.887 6 C -0.133 4.133 7 C -0.117 4.117 8 C 0.080 3.920 9 H 0.113 0.887 10 O -0.345 6.345 11 C 0.501 3.499 12 O -0.463 6.463 13 C -0.211 4.211 14 C -0.016 4.016 15 C -0.235 4.235 16 C -0.044 4.044 17 C -0.239 4.239 18 C 0.192 3.808 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.831 5.831 24 Si 0.942 3.058 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.268 1.268 28 C 0.503 3.497 29 O -0.510 6.510 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.631 -6.036 -10.859 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 C -0.230 4.230 4 N -0.340 5.340 5 C -0.010 4.010 6 C -0.171 4.171 7 C -0.155 4.155 8 C 0.021 3.979 9 H 0.131 0.869 10 O -0.264 6.264 11 C 0.345 3.655 12 O -0.347 6.347 13 C -0.214 4.214 14 C -0.035 4.035 15 C -0.254 4.254 16 C -0.063 4.063 17 C -0.258 4.258 18 C 0.132 3.868 19 O -0.021 6.021 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.462 5.462 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.193 1.193 28 C 0.290 3.710 29 O -0.384 6.384 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.152 0.848 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.508 -5.958 -11.085 17.744 hybrid contribution -0.631 0.259 0.474 0.831 sum 11.877 -5.698 -10.611 16.916 Atomic orbital electron populations 1.22230 0.94699 1.02073 1.04050 1.21035 0.94943 0.93629 0.86443 1.22249 1.00535 0.96145 1.04051 1.47495 1.51587 1.29090 1.05847 1.21432 0.94928 0.86198 0.98431 1.21867 1.03755 0.98030 0.93431 1.21726 0.97767 0.96505 0.99516 1.22303 1.00221 0.88499 0.86840 0.86938 1.86636 1.40791 1.51340 1.47596 1.21074 0.83370 0.81626 0.79398 1.90994 1.19658 1.58354 1.65736 1.17983 0.93589 1.04707 1.05114 1.20938 0.93774 0.93758 0.95007 1.20518 0.98854 1.03376 1.02652 1.20955 0.92533 0.96577 0.96224 1.21101 0.97422 1.02781 1.04500 1.19219 0.85322 0.90931 0.91316 1.84152 1.11959 1.57975 1.48040 1.21482 0.90190 1.22405 1.13826 0.88730 1.25413 0.97131 0.95934 0.97830 1.70120 1.18664 1.24655 1.32756 0.85771 0.78886 0.79102 0.79621 1.19295 1.20130 1.19290 1.20367 0.80231 0.85300 0.85087 1.90715 1.36964 1.23923 1.86846 0.91956 0.92993 0.89682 0.90029 0.93081 0.92109 0.89482 0.90647 0.91633 0.90508 0.88869 0.89883 0.89609 0.85928 0.87024 0.86984 0.84844 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.08 37.15 0.34 -1.92 16 2 C 0.14 1.67 3.21 -67.93 -0.22 1.45 16 3 C -0.17 -2.17 9.08 37.16 0.34 -1.83 16 4 N -0.60 -7.58 2.79 -167.38 -0.47 -8.04 16 5 C 0.11 0.91 6.25 -4.49 -0.03 0.89 16 6 C -0.13 -1.02 6.02 -26.60 -0.16 -1.18 16 7 C -0.12 -1.25 5.69 -26.52 -0.15 -1.40 16 8 C 0.08 1.32 2.70 -28.10 -0.08 1.25 16 9 H 0.11 2.05 7.16 -51.93 -0.37 1.67 16 10 O -0.35 -6.80 9.01 -46.40 -0.42 -7.21 16 11 C 0.50 12.12 7.34 34.46 0.25 12.38 16 12 O -0.46 -13.17 14.26 -26.63 -0.38 -13.55 16 13 C -0.21 -4.97 5.89 -104.83 -0.62 -5.59 16 14 C -0.02 -0.31 9.61 -39.19 -0.38 -0.69 16 15 C -0.23 -4.09 10.02 -39.61 -0.40 -4.49 16 16 C -0.04 -0.81 10.03 -39.53 -0.40 -1.20 16 17 C -0.24 -5.26 9.16 -39.44 -0.36 -5.62 16 18 C 0.19 4.94 6.66 -38.58 -0.26 4.69 16 19 O -0.12 -3.72 7.84 -20.98 -0.16 -3.89 16 20 C -0.40 -11.56 9.49 30.91 0.29 -11.27 16 21 H 0.10 2.44 5.21 -52.49 -0.27 2.17 16 22 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 23 N -0.83 -25.31 13.67 55.48 0.76 -24.55 16 24 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 C 0.50 8.59 6.64 -11.87 -0.08 8.51 16 29 O -0.51 -11.03 11.59 -10.84 -0.13 -11.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.48 6.00 -51.92 -0.31 1.17 16 33 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.45 5.84 -51.93 -0.30 1.15 16 37 H 0.08 0.46 8.03 -51.93 -0.42 0.05 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.12 2.02 7.61 -52.49 -0.40 1.62 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -37.06 383.33 -8.60 -45.66 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.56 Total: 6.19 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.99 Total: -4.86 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.29 Total: -32.60 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.09 Total: -35.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.06 -8.60 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748180483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.262 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds