Wall clock time and date at job start Wed Apr 1 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47736 * 2 1 4 4 N 1.46501 * 109.47406 * 120.00568 * 2 1 3 5 5 C 1.45750 * 117.95121 * 120.02106 * 4 2 1 6 6 C 1.52914 * 110.48731 * 199.05145 * 5 4 2 7 7 C 1.53337 * 108.68642 * 309.25709 * 6 5 4 8 8 C 1.53068 * 108.42576 * 67.52306 * 7 6 5 9 9 H 1.08998 * 109.40147 * 71.22206 * 8 7 6 10 10 O 1.45202 * 109.32976 * 191.01393 * 8 7 6 11 11 C 1.34753 * 116.99698 * 210.21203 * 10 8 7 12 12 O 1.21515 * 120.00331 * 359.97438 * 11 10 8 13 13 C 1.47399 * 120.00041 * 179.97438 * 11 10 8 14 14 C 1.39726 * 120.20338 * 0.02562 * 13 11 10 15 15 C 1.37800 * 119.91872 * 179.97438 * 14 13 11 16 16 C 1.38597 * 120.32940 * 359.96897 * 15 14 13 17 17 C 1.38028 * 120.41076 * 0.02931 * 16 15 14 18 18 C 1.38835 * 120.07728 * 359.73866 * 17 16 15 19 19 O 1.35503 * 120.16044 * 180.27888 * 18 17 16 20 20 C 1.34805 * 117.00294 * 354.40196 * 19 18 17 21 21 H 1.08001 * 120.00376 * 5.06977 * 20 19 18 22 22 C 1.38709 * 120.00323 * 185.06560 * 20 19 18 23 23 N 1.31521 * 119.99577 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00242 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46954 * 60.00093 * 24 22 20 26 26 H 1.48503 * 109.46583 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47052 * 299.99577 * 24 22 20 28 28 C 1.33362 * 117.94233 * 299.99399 * 4 2 1 29 29 O 1.21280 * 118.24663 * 357.80091 * 28 4 2 30 30 H 1.09000 * 109.47457 * 59.99777 * 1 2 3 31 31 H 1.08996 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46840 * 299.99626 * 1 2 3 33 33 H 1.09006 * 109.47214 * 240.00028 * 2 1 3 34 34 H 1.08997 * 109.47911 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46829 * 300.00607 * 3 2 1 36 36 H 1.09006 * 109.46746 * 59.99742 * 3 2 1 37 37 H 1.08998 * 109.29645 * 319.36291 * 5 4 2 38 38 H 1.08997 * 109.30427 * 78.73504 * 5 4 2 39 39 H 1.09005 * 109.60600 * 69.00270 * 6 5 4 40 40 H 1.09002 * 109.60649 * 189.32161 * 6 5 4 41 41 H 1.08995 * 109.67466 * 307.78272 * 7 6 5 42 42 H 1.09010 * 109.66665 * 187.25326 * 7 6 5 43 43 H 1.07999 * 120.04262 * 359.97438 * 14 13 11 44 44 H 1.07997 * 119.84030 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.79249 * 180.02562 * 16 15 14 46 46 H 1.07998 * 119.95705 * 179.97438 * 17 16 15 47 47 H 0.96995 * 119.99883 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8534 -1.8708 1.0104 6 6 2.8777 -2.7151 2.2850 7 6 3.2236 -1.8058 3.4702 8 6 2.0609 -0.8349 3.6906 9 1 1.2080 -1.3779 4.0979 10 8 2.4676 0.1974 4.6272 11 6 1.5053 0.7314 5.4048 12 8 0.3577 0.3453 5.3027 13 6 1.8448 1.7839 6.3793 14 6 3.1630 2.2314 6.5000 15 6 3.4737 3.2160 7.4126 16 6 2.4846 3.7663 8.2124 17 6 1.1781 3.3345 8.1045 18 6 0.8452 2.3468 7.1874 19 8 -0.4379 1.9256 7.0761 20 6 -1.3238 2.4208 7.9634 21 1 -1.0167 3.1814 8.6659 22 6 -2.6297 1.9535 7.9741 23 7 -3.0035 1.0269 7.1188 24 14 -3.8575 2.6402 9.2030 25 1 -4.0016 4.1033 8.9937 26 1 -5.1738 1.9808 9.0088 27 1 -3.3731 2.3828 10.5830 28 6 1.6714 -0.1999 2.3866 29 8 1.0053 0.8131 2.4178 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.4555 -2.4681 0.1901 38 1 3.8686 -1.5588 0.7654 39 1 1.8980 -3.1658 2.4440 40 1 3.6295 -3.4987 2.1904 41 1 4.1325 -1.2460 3.2502 42 1 3.3718 -2.4101 4.3653 43 1 3.9374 1.8062 5.8787 44 1 4.4931 3.5607 7.5051 45 1 2.7378 4.5378 8.9245 46 1 0.4133 3.7681 8.7317 47 1 -3.9169 0.7004 7.1260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748180483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:29 Heat of formation + Delta-G solvation = -134.425335 kcal Electronic energy + Delta-G solvation = -31623.529957 eV Core-core repulsion = 27350.728212 eV Total energy + Delta-G solvation = -4272.801746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26198 -41.28364 -40.27115 -38.16680 -37.68255 -37.48810 -35.78260 -34.39862 -32.50870 -31.88464 -30.67674 -30.23267 -28.17662 -27.49139 -25.90830 -24.87918 -24.24825 -23.28881 -22.14663 -21.87212 -19.94990 -19.80130 -19.27817 -18.59232 -18.14613 -17.61283 -17.08568 -16.62943 -16.43778 -16.27113 -16.11401 -15.67948 -15.57860 -15.29871 -15.23851 -14.97344 -14.83260 -14.58417 -14.40691 -14.23967 -13.97525 -13.59625 -13.36486 -13.10543 -13.06486 -12.84024 -12.75044 -12.68781 -12.55774 -12.53035 -12.39575 -12.29322 -12.20002 -12.17249 -11.86759 -11.75768 -11.60811 -11.07437 -10.87051 -10.38542 -9.94883 -9.74365 -9.14498 -8.50053 -6.22171 -0.06182 0.66375 1.16353 1.30104 1.44043 1.48967 1.66201 1.85109 2.03445 2.12802 2.79831 3.12955 3.32967 3.35545 3.56594 3.64476 3.80602 3.95870 3.97565 4.04002 4.06665 4.16869 4.25244 4.27862 4.44063 4.48623 4.55417 4.57991 4.67602 4.73681 4.78297 4.82935 4.87466 4.90150 4.96146 4.98863 5.01901 5.08849 5.18773 5.23750 5.31522 5.37535 5.44642 5.58006 5.62833 5.63717 5.90560 6.10181 6.37788 6.87415 6.95447 7.09523 7.70158 8.70169 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003453 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.681955 B = 8106.873821 C = 9298.322737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 C -0.168 4.168 4 N -0.592 5.592 5 C 0.100 3.900 6 C -0.127 4.127 7 C -0.107 4.107 8 C 0.068 3.932 9 H 0.080 0.920 10 O -0.335 6.335 11 C 0.500 3.500 12 O -0.522 6.522 13 C -0.238 4.238 14 C -0.014 4.014 15 C -0.202 4.202 16 C -0.027 4.027 17 C -0.256 4.256 18 C 0.156 3.844 19 O -0.188 6.188 20 C -0.431 4.431 21 H 0.113 0.887 22 C -0.022 4.022 23 N -0.905 5.905 24 Si 1.026 2.974 25 H -0.253 1.253 26 H -0.273 1.273 27 H -0.249 1.249 28 C 0.494 3.506 29 O -0.571 6.571 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.154 0.846 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.132 0.868 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.520 -5.789 -11.427 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 C -0.226 4.226 4 N -0.326 5.326 5 C -0.020 4.020 6 C -0.164 4.164 7 C -0.145 4.145 8 C 0.009 3.991 9 H 0.098 0.902 10 O -0.252 6.252 11 C 0.347 3.653 12 O -0.410 6.410 13 C -0.241 4.241 14 C -0.032 4.032 15 C -0.220 4.220 16 C -0.044 4.044 17 C -0.275 4.275 18 C 0.100 3.900 19 O -0.091 6.091 20 C -0.506 4.506 21 H 0.130 0.870 22 C -0.221 4.221 23 N -0.541 5.541 24 Si 0.844 3.156 25 H -0.177 1.177 26 H -0.198 1.198 27 H -0.173 1.173 28 C 0.281 3.719 29 O -0.450 6.450 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.172 0.828 44 H 0.186 0.814 45 H 0.181 0.819 46 H 0.150 0.850 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.531 -5.728 -11.683 21.832 hybrid contribution -1.673 0.215 0.510 1.762 sum 15.857 -5.514 -11.173 20.166 Atomic orbital electron populations 1.22181 0.96375 1.01942 1.02327 1.21272 0.93722 0.93761 0.87585 1.22176 1.01257 0.96613 1.02515 1.47628 1.50632 1.29864 1.04451 1.21929 0.95719 0.84755 0.99608 1.21955 1.04658 0.98163 0.91648 1.21853 0.95387 0.95567 1.01693 1.22812 1.02143 0.88259 0.85859 0.90177 1.86567 1.39100 1.51997 1.47541 1.21429 0.83083 0.81347 0.79447 1.90971 1.22182 1.60315 1.67581 1.18513 0.95429 1.05087 1.05059 1.21373 0.92132 0.93993 0.95724 1.21227 1.01172 1.00305 0.99339 1.21553 0.90497 0.96288 0.96110 1.21302 0.99685 1.02410 1.04096 1.20001 0.84890 0.92181 0.92897 1.84162 1.13884 1.60785 1.50244 1.22100 0.90883 1.23178 1.14449 0.87024 1.26877 0.99214 0.96045 1.00011 1.70330 1.19193 1.28093 1.36441 0.84572 0.75420 0.78691 0.76941 1.17735 1.19781 1.17333 1.20517 0.79970 0.84857 0.86590 1.90719 1.39684 1.26772 1.87825 0.89908 0.92284 0.95123 0.84878 0.91667 0.90226 0.94417 0.87378 0.88692 0.91621 0.84353 0.88284 0.88572 0.82818 0.81388 0.81862 0.85000 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 9.08 71.98 0.65 -3.96 16 2 C 0.14 3.05 3.21 44.99 0.14 3.20 16 3 C -0.17 -4.18 9.08 71.98 0.65 -3.53 16 4 N -0.59 -14.26 2.79 -802.65 -2.24 -16.50 16 5 C 0.10 1.21 6.25 86.49 0.54 1.75 16 6 C -0.13 -1.54 6.02 30.68 0.18 -1.35 16 7 C -0.11 -2.12 5.69 30.73 0.17 -1.94 16 8 C 0.07 2.38 2.70 29.71 0.08 2.46 16 9 H 0.08 3.31 7.16 -2.39 -0.02 3.29 16 10 O -0.33 -13.93 9.01 -51.12 -0.46 -14.39 16 11 C 0.50 26.33 7.34 70.23 0.52 26.84 16 12 O -0.52 -33.33 14.26 26.82 0.38 -32.94 16 13 C -0.24 -11.74 5.89 -20.00 -0.12 -11.86 16 14 C -0.01 -0.51 9.61 22.53 0.22 -0.30 16 15 C -0.20 -6.01 10.02 22.25 0.22 -5.79 16 16 C -0.03 -0.86 10.03 22.31 0.22 -0.64 16 17 C -0.26 -11.32 9.16 22.36 0.20 -11.11 16 18 C 0.16 8.53 6.66 22.92 0.15 8.68 16 19 O -0.19 -12.52 7.84 1.11 0.01 -12.51 16 20 C -0.43 -26.70 9.49 67.93 0.64 -26.06 16 21 H 0.11 6.12 5.21 -2.91 -0.02 6.10 16 22 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 23 N -0.91 -60.72 13.67 21.62 0.30 -60.42 16 24 Si 1.03 44.91 29.55 68.60 2.03 46.93 16 25 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 28 C 0.49 17.90 6.64 87.71 0.58 18.48 16 29 O -0.57 -27.40 11.59 12.65 0.15 -27.25 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.03 1.17 6.00 -2.38 -0.01 1.16 16 33 H 0.13 1.66 7.79 -2.38 -0.02 1.64 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.34 5.84 -2.38 -0.01 1.33 16 37 H 0.11 0.72 8.03 -2.39 -0.02 0.70 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.98 8.12 -2.38 -0.02 0.96 16 40 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 42 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.15 4.57 7.61 -2.91 -0.02 4.55 16 44 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.13 5.75 5.64 -2.91 -0.02 5.74 16 47 H 0.27 16.70 8.31 -92.71 -0.77 15.93 16 Total: -1.00 -100.32 383.33 6.70 -93.62 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.99 Total: 29.44 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.54 Total: -5.99 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.94 Total: -76.92 kcal Atomic # 8 Polarization: -87.17 SS G_CDS: 0.08 Total: -87.09 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -100.32 6.70 -93.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748180483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.801 kcal (2) G-P(sol) polarization free energy of solvation -100.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds