Wall clock time and date at job start Wed Apr 1 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.52994 * 109.47432 * 120.00664 * 2 1 3 5 5 C 1.50702 * 109.47362 * 176.81995 * 4 2 1 6 6 O 1.20817 * 120.00044 * 3.32325 * 5 4 2 7 7 O 1.34231 * 119.99858 * 183.32348 * 5 4 2 8 8 C 1.45201 * 116.99981 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47148 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00386 * 354.97876 * 9 8 7 11 11 N 1.34776 * 119.99865 * 174.98010 * 9 8 7 12 12 C 1.37143 * 120.00031 * 4.51467 * 11 9 8 13 13 H 1.07999 * 119.99984 * 58.52231 * 12 11 9 14 14 C 1.38883 * 119.99764 * 238.51617 * 12 11 9 15 15 N 1.31419 * 120.00529 * 5.92594 * 14 12 11 16 16 Si 1.86811 * 119.99995 * 185.92122 * 14 12 11 17 17 H 1.48500 * 109.46575 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46980 * 120.00172 * 16 14 12 19 19 H 1.48498 * 109.47078 * 240.00707 * 16 14 12 20 20 C 1.39794 * 120.00054 * 184.51375 * 11 9 8 21 21 C 1.38952 * 120.07949 * 173.93875 * 20 11 9 22 22 C 1.38076 * 119.92486 * 179.97438 * 21 20 11 23 23 C 1.38312 * 120.07747 * 359.97438 * 22 21 20 24 24 C 1.38311 * 120.15491 * 359.97438 * 23 22 21 25 25 C 1.38081 * 120.07448 * 0.02562 * 24 23 22 26 26 C 1.53002 * 109.46797 * 240.00524 * 2 1 3 27 27 C 1.53001 * 117.50121 * 128.62570 * 26 2 1 28 28 C 1.52997 * 117.50230 * 59.99631 * 26 2 1 29 29 H 1.09003 * 109.46547 * 304.89587 * 1 2 3 30 30 H 1.08995 * 109.46961 * 64.88851 * 1 2 3 31 31 H 1.08990 * 109.47482 * 184.89264 * 1 2 3 32 32 H 0.96705 * 113.99537 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47347 * 56.81429 * 4 2 1 34 34 H 1.09009 * 109.46961 * 296.81949 * 4 2 1 35 35 H 1.08993 * 109.46784 * 59.99744 * 8 7 5 36 36 H 1.09002 * 109.46647 * 300.00204 * 8 7 5 37 37 H 0.97001 * 120.00464 * 184.99115 * 15 14 12 38 38 H 1.08004 * 120.03816 * 359.70636 * 21 20 11 39 39 H 1.08007 * 119.96811 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.92256 * 179.97438 * 23 22 21 41 41 H 1.07993 * 119.96165 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.03676 * 179.97438 * 25 24 23 43 43 H 1.09008 * 115.54623 * 274.32742 * 26 2 1 44 44 H 1.09000 * 117.49963 * 359.97438 * 27 26 2 45 45 H 1.08997 * 117.50148 * 145.02190 * 27 26 2 46 46 H 1.09001 * 117.50162 * 214.97945 * 28 26 2 47 47 H 1.08994 * 117.49828 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5450 -0.7900 1.2103 6 8 4.1509 -0.2589 0.3100 7 8 4.2123 -1.4411 2.1760 8 6 5.6605 -1.4671 2.0741 9 6 6.2321 -2.2371 3.2365 10 8 5.5005 -2.6387 4.1165 11 7 7.5564 -2.4797 3.2981 12 6 8.3957 -1.9475 2.3531 13 1 8.4425 -0.8776 2.2135 14 6 9.1856 -2.7845 1.5757 15 7 9.0453 -4.0882 1.6627 16 14 10.4476 -2.0570 0.4060 17 1 10.4089 -0.5752 0.4955 18 1 11.8021 -2.5397 0.7767 19 1 10.1351 -2.4777 -0.9834 20 6 8.0745 -3.2737 4.3254 21 6 9.4178 -3.6290 4.3211 22 6 9.9263 -4.4129 5.3376 23 6 9.1003 -4.8441 6.3598 24 6 7.7629 -4.4915 6.3680 25 6 7.2478 -3.7078 5.3545 26 6 2.0399 -0.7212 -1.2493 27 6 3.0741 0.0052 -2.1118 28 6 1.6356 -0.1494 -2.6097 29 1 -0.3632 0.5879 0.8429 30 1 -0.3633 0.4361 -0.9305 31 1 -0.3634 -1.0238 0.0876 32 1 2.9704 1.4236 -0.0004 33 1 1.6309 -1.7312 1.2780 34 1 1.7240 -0.1757 2.1383 35 1 6.0441 -0.4470 2.0897 36 1 5.9504 -1.9500 1.1409 37 1 9.6450 -4.6743 1.1749 38 1 10.0625 -3.2959 3.5211 39 1 10.9703 -4.6899 5.3347 40 1 9.5006 -5.4575 7.1534 41 1 7.1209 -4.8295 7.1678 42 1 6.2033 -3.4331 5.3613 43 1 2.1266 -1.8045 -1.1643 44 1 3.3909 0.9971 -1.7893 45 1 3.8415 -0.6001 -2.5943 46 1 1.4567 -0.8564 -3.4197 47 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756308320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:20 Heat of formation + Delta-G solvation = -93.850264 kcal Electronic energy + Delta-G solvation = -31017.725486 eV Core-core repulsion = 26746.683207 eV Total energy + Delta-G solvation = -4271.042278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78995 -39.80731 -38.81547 -37.27595 -35.97854 -35.12137 -35.05605 -32.46499 -32.08209 -29.94981 -29.65767 -28.73626 -27.06117 -25.27404 -23.67828 -22.28780 -21.98736 -21.34797 -20.88716 -19.90371 -19.64072 -18.00151 -17.61651 -16.99463 -16.53197 -16.50863 -15.97045 -15.65590 -15.47064 -15.14711 -14.82931 -14.45534 -14.21820 -13.81345 -13.32207 -13.13334 -13.08287 -12.90222 -12.84813 -12.54362 -12.37891 -12.33083 -12.16031 -12.07279 -11.77244 -11.56630 -11.36758 -11.35055 -11.21072 -11.18906 -10.90449 -10.61591 -10.51528 -10.47839 -10.34053 -10.11213 -9.98280 -9.82431 -9.32998 -8.86725 -8.27413 -7.86397 -6.98529 -6.42413 -4.72312 2.31038 2.32491 2.49651 2.67497 2.96834 3.07433 3.10703 3.57818 3.75637 3.87110 4.08505 4.30709 4.45421 4.57400 4.63339 4.84033 5.01507 5.01846 5.05191 5.18097 5.27618 5.38004 5.44869 5.52512 5.63256 5.63550 5.68539 5.73228 5.81825 5.86993 5.97871 5.98390 6.00846 6.10558 6.12854 6.22089 6.62707 6.64386 6.67362 6.81504 7.06346 7.14001 7.43624 7.53653 7.59289 7.61337 7.67921 7.90551 7.96725 8.32714 8.71465 9.06747 9.45004 10.35730 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.003029 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.074072 B = 9241.205113 C =10887.782812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.176 3.824 3 O -0.562 6.562 4 C -0.142 4.142 5 C 0.461 3.539 6 O -0.506 6.506 7 O -0.336 6.336 8 C 0.074 3.926 9 C 0.496 3.504 10 O -0.548 6.548 11 N -0.378 5.378 12 C -0.380 4.380 13 H 0.096 0.904 14 C 0.059 3.941 15 N -0.839 5.839 16 Si 0.916 3.084 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.276 1.276 20 C 0.183 3.817 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.171 4.171 24 C -0.120 4.120 25 C -0.191 4.191 26 C -0.183 4.183 27 C -0.143 4.143 28 C -0.180 4.180 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.386 0.614 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.276 0.724 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.175 0.825 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 4.946 -3.802 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.134 3.866 3 O -0.373 6.373 4 C -0.180 4.180 5 C 0.305 3.695 6 O -0.395 6.395 7 O -0.251 6.251 8 C -0.002 4.002 9 C 0.287 3.713 10 O -0.431 6.431 11 N -0.087 5.087 12 C -0.507 4.507 13 H 0.113 0.887 14 C -0.151 4.151 15 N -0.470 5.470 16 Si 0.741 3.259 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.201 1.201 20 C 0.087 3.913 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.190 4.190 24 C -0.139 4.139 25 C -0.210 4.210 26 C -0.201 4.201 27 C -0.179 4.179 28 C -0.217 4.217 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.191 0.809 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.784 4.878 -3.828 12.440 hybrid contribution 1.797 -0.247 -0.744 1.961 sum -8.987 4.631 -4.573 11.096 Atomic orbital electron populations 1.21717 0.91569 1.02609 1.03284 1.20403 0.94314 0.81821 0.90015 1.86433 1.28865 1.25302 1.96666 1.22220 0.88552 1.05109 1.02070 1.23599 0.91457 0.75188 0.79280 1.90601 1.70237 1.44004 1.34702 1.86485 1.22194 1.68341 1.48111 1.22564 0.75350 1.02253 1.00071 1.20273 0.82691 0.81754 0.86589 1.90231 1.59720 1.53700 1.39441 1.40778 1.03962 1.41964 1.21995 1.19441 1.24101 0.92837 1.14362 0.88669 1.25678 0.98303 0.95027 0.96125 1.70016 1.35117 1.02593 1.39288 0.86030 0.80007 0.79928 0.79955 1.18647 1.19967 1.20109 1.18272 0.92601 0.93158 0.87304 1.21013 0.94804 0.98574 0.97867 1.20784 0.98634 0.99701 0.95146 1.20822 0.94569 1.03903 0.99690 1.20876 0.94906 0.99436 0.98678 1.22767 1.03704 1.00552 0.93979 1.22912 1.05945 0.99358 0.91935 1.22744 0.91465 1.02137 1.01593 1.22977 0.99444 1.02941 0.96294 0.91577 0.91294 0.90869 0.76108 0.86820 0.86742 0.88715 0.87745 0.91321 0.84974 0.87652 0.88059 0.87589 0.80923 0.87873 0.88302 0.89191 0.89316 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.76 37.16 0.33 -0.81 16 2 C 0.18 1.88 0.92 -90.62 -0.08 1.79 16 3 O -0.56 -6.93 12.12 -52.38 -0.63 -7.56 16 4 C -0.14 -1.55 5.09 -27.89 -0.14 -1.69 16 5 C 0.46 6.83 7.45 36.01 0.27 7.10 16 6 O -0.51 -7.91 11.11 -24.72 -0.27 -8.18 16 7 O -0.34 -6.06 9.76 -45.89 -0.45 -6.50 16 8 C 0.07 1.45 4.77 36.00 0.17 1.62 16 9 C 0.50 11.57 7.65 -10.99 -0.08 11.49 16 10 O -0.55 -13.48 12.90 -14.05 -0.18 -13.66 16 11 N -0.38 -9.24 2.60 -58.98 -0.15 -9.39 16 12 C -0.38 -9.03 7.53 -14.94 -0.11 -9.14 16 13 H 0.10 2.15 7.84 -52.49 -0.41 1.74 16 14 C 0.06 1.39 3.66 -17.49 -0.06 1.33 16 15 N -0.84 -21.08 11.39 55.49 0.63 -20.45 16 16 Si 0.92 18.15 29.56 -169.99 -5.02 13.13 16 17 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 C 0.18 4.50 6.06 -83.70 -0.51 3.99 16 21 C -0.10 -2.39 7.93 -39.38 -0.31 -2.70 16 22 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 23 C -0.17 -3.31 10.04 -39.53 -0.40 -3.71 16 24 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 25 C -0.19 -4.45 9.05 -39.37 -0.36 -4.80 16 26 C -0.18 -2.04 3.97 -90.62 -0.36 -2.40 16 27 C -0.14 -1.69 7.95 -26.73 -0.21 -1.91 16 28 C -0.18 -1.82 9.61 -26.73 -0.26 -2.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.58 7.13 -51.93 -0.37 0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.39 4.85 5.36 45.56 0.24 5.09 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.11 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.09 1.73 8.13 -51.93 -0.42 1.30 16 36 H 0.10 2.11 8.02 -51.93 -0.42 1.69 16 37 H 0.28 6.55 8.32 -40.82 -0.34 6.21 16 38 H 0.13 3.20 5.22 -52.48 -0.27 2.92 16 39 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.17 4.19 4.52 -56.29 -0.25 3.93 16 43 H 0.10 1.17 8.11 -51.92 -0.42 0.74 16 44 H 0.10 1.22 6.29 -51.93 -0.33 0.89 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -28.19 380.84 -9.25 -37.44 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -5.99 Total: 17.15 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.92 Total: -7.71 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.48 Total: -29.84 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.54 Total: -35.91 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.19 -9.25 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756308320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.406 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds