Wall clock time and date at job start Wed Apr 1 2020 04:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.52994 * 109.47432 * 120.00664 * 2 1 3 5 5 C 1.50702 * 109.47362 * 176.81995 * 4 2 1 6 6 O 1.20817 * 120.00044 * 3.32325 * 5 4 2 7 7 O 1.34231 * 119.99858 * 183.32348 * 5 4 2 8 8 C 1.45201 * 116.99981 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47148 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00386 * 354.97876 * 9 8 7 11 11 N 1.34776 * 119.99865 * 174.98010 * 9 8 7 12 12 C 1.37143 * 120.00031 * 4.51467 * 11 9 8 13 13 H 1.07999 * 119.99984 * 58.52231 * 12 11 9 14 14 C 1.38883 * 119.99764 * 238.51617 * 12 11 9 15 15 N 1.31419 * 120.00529 * 5.92594 * 14 12 11 16 16 Si 1.86811 * 119.99995 * 185.92122 * 14 12 11 17 17 H 1.48500 * 109.46575 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46980 * 120.00172 * 16 14 12 19 19 H 1.48498 * 109.47078 * 240.00707 * 16 14 12 20 20 C 1.39794 * 120.00054 * 184.51375 * 11 9 8 21 21 C 1.38952 * 120.07949 * 173.93875 * 20 11 9 22 22 C 1.38076 * 119.92486 * 179.97438 * 21 20 11 23 23 C 1.38312 * 120.07747 * 359.97438 * 22 21 20 24 24 C 1.38311 * 120.15491 * 359.97438 * 23 22 21 25 25 C 1.38081 * 120.07448 * 0.02562 * 24 23 22 26 26 C 1.53002 * 109.46797 * 240.00524 * 2 1 3 27 27 C 1.53001 * 117.50121 * 128.62570 * 26 2 1 28 28 C 1.52997 * 117.50230 * 59.99631 * 26 2 1 29 29 H 1.09003 * 109.46547 * 304.89587 * 1 2 3 30 30 H 1.08995 * 109.46961 * 64.88851 * 1 2 3 31 31 H 1.08990 * 109.47482 * 184.89264 * 1 2 3 32 32 H 0.96705 * 113.99537 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47347 * 56.81429 * 4 2 1 34 34 H 1.09009 * 109.46961 * 296.81949 * 4 2 1 35 35 H 1.08993 * 109.46784 * 59.99744 * 8 7 5 36 36 H 1.09002 * 109.46647 * 300.00204 * 8 7 5 37 37 H 0.97001 * 120.00464 * 184.99115 * 15 14 12 38 38 H 1.08004 * 120.03816 * 359.70636 * 21 20 11 39 39 H 1.08007 * 119.96811 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.92256 * 179.97438 * 23 22 21 41 41 H 1.07993 * 119.96165 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.03676 * 179.97438 * 25 24 23 43 43 H 1.09008 * 115.54623 * 274.32742 * 26 2 1 44 44 H 1.09000 * 117.49963 * 359.97438 * 27 26 2 45 45 H 1.08997 * 117.50148 * 145.02190 * 27 26 2 46 46 H 1.09001 * 117.50162 * 214.97945 * 28 26 2 47 47 H 1.08994 * 117.49828 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5450 -0.7900 1.2103 6 8 4.1509 -0.2589 0.3100 7 8 4.2123 -1.4411 2.1760 8 6 5.6605 -1.4671 2.0741 9 6 6.2321 -2.2371 3.2365 10 8 5.5005 -2.6387 4.1165 11 7 7.5564 -2.4797 3.2981 12 6 8.3957 -1.9475 2.3531 13 1 8.4425 -0.8776 2.2135 14 6 9.1856 -2.7845 1.5757 15 7 9.0453 -4.0882 1.6627 16 14 10.4476 -2.0570 0.4060 17 1 10.4089 -0.5752 0.4955 18 1 11.8021 -2.5397 0.7767 19 1 10.1351 -2.4777 -0.9834 20 6 8.0745 -3.2737 4.3254 21 6 9.4178 -3.6290 4.3211 22 6 9.9263 -4.4129 5.3376 23 6 9.1003 -4.8441 6.3598 24 6 7.7629 -4.4915 6.3680 25 6 7.2478 -3.7078 5.3545 26 6 2.0399 -0.7212 -1.2493 27 6 3.0741 0.0052 -2.1118 28 6 1.6356 -0.1494 -2.6097 29 1 -0.3632 0.5879 0.8429 30 1 -0.3633 0.4361 -0.9305 31 1 -0.3634 -1.0238 0.0876 32 1 2.9704 1.4236 -0.0004 33 1 1.6309 -1.7312 1.2780 34 1 1.7240 -0.1757 2.1383 35 1 6.0441 -0.4470 2.0897 36 1 5.9504 -1.9500 1.1409 37 1 9.6450 -4.6743 1.1749 38 1 10.0625 -3.2959 3.5211 39 1 10.9703 -4.6899 5.3347 40 1 9.5006 -5.4575 7.1534 41 1 7.1209 -4.8295 7.1678 42 1 6.2033 -3.4331 5.3613 43 1 2.1266 -1.8045 -1.1643 44 1 3.3909 0.9971 -1.7893 45 1 3.8415 -0.6001 -2.5943 46 1 1.4567 -0.8564 -3.4197 47 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756308320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:19 Heat of formation + Delta-G solvation = -107.342397 kcal Electronic energy + Delta-G solvation = -31018.310548 eV Core-core repulsion = 26746.683207 eV Total energy + Delta-G solvation = -4271.627341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03562 -41.44003 -39.92652 -38.91398 -37.31888 -36.88752 -35.97097 -33.90215 -33.36654 -31.54339 -31.30897 -29.85273 -28.47620 -27.08233 -24.58740 -23.61097 -23.16747 -22.96256 -22.14946 -21.42110 -20.79889 -19.71626 -18.87879 -17.99275 -17.92495 -17.82128 -17.50730 -17.35484 -16.85857 -16.47178 -16.21338 -15.96233 -15.46936 -15.26210 -14.80447 -14.66619 -14.43388 -14.30872 -14.00257 -13.74628 -13.68320 -13.52239 -13.29494 -13.22339 -13.08589 -13.07419 -12.91228 -12.86091 -12.50686 -12.24659 -12.09500 -12.07959 -11.84193 -11.76633 -11.66447 -11.37844 -11.09404 -10.87142 -10.76888 -10.63015 -10.04866 -9.55463 -8.77108 -8.20365 -6.57991 0.61805 0.79459 1.12875 1.31547 1.38840 1.44857 1.55810 1.85415 2.21388 2.76037 2.85086 2.89243 3.22931 3.31054 3.54098 3.70717 3.73426 3.83279 4.04166 4.13780 4.17213 4.24573 4.31573 4.34198 4.36979 4.44347 4.57768 4.59195 4.70096 4.81340 4.90260 4.91704 4.97132 4.97824 5.10580 5.11729 5.26822 5.30171 5.30587 5.34718 5.38996 5.41028 5.77249 5.85397 5.86703 5.99121 6.18160 6.54554 6.59255 6.73760 6.90058 7.27529 7.65254 8.57406 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.003029 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.074072 B = 9241.205113 C =10887.782812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.173 3.827 3 O -0.571 6.571 4 C -0.136 4.136 5 C 0.456 3.544 6 O -0.516 6.516 7 O -0.350 6.350 8 C 0.088 3.912 9 C 0.482 3.518 10 O -0.569 6.569 11 N -0.389 5.389 12 C -0.391 4.391 13 H 0.101 0.899 14 C 0.028 3.972 15 N -0.873 5.873 16 Si 0.979 3.021 17 H -0.254 1.254 18 H -0.270 1.270 19 H -0.278 1.278 20 C 0.149 3.851 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.161 4.161 24 C -0.119 4.119 25 C -0.214 4.214 26 C -0.187 4.187 27 C -0.161 4.161 28 C -0.161 4.161 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.382 0.618 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.277 0.723 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 4.704 -3.460 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.132 3.868 3 O -0.381 6.381 4 C -0.173 4.173 5 C 0.301 3.699 6 O -0.405 6.405 7 O -0.266 6.266 8 C 0.012 3.988 9 C 0.274 3.726 10 O -0.454 6.454 11 N -0.098 5.098 12 C -0.518 4.518 13 H 0.118 0.882 14 C -0.180 4.180 15 N -0.505 5.505 16 Si 0.801 3.199 17 H -0.178 1.178 18 H -0.195 1.195 19 H -0.203 1.203 20 C 0.053 3.947 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.180 4.180 24 C -0.137 4.137 25 C -0.234 4.234 26 C -0.206 4.206 27 C -0.198 4.198 28 C -0.197 4.197 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.149 4.651 -3.486 12.573 hybrid contribution 1.887 -0.203 -0.791 2.056 sum -9.262 4.448 -4.277 11.129 Atomic orbital electron populations 1.21754 0.89405 1.04074 1.03675 1.20620 0.95739 0.80970 0.89437 1.86434 1.28553 1.26454 1.96682 1.22404 0.85170 1.06719 1.03009 1.24462 0.92793 0.74285 0.78373 1.90604 1.70763 1.44249 1.34888 1.86508 1.20998 1.69451 1.49663 1.22231 0.76812 1.01955 0.97810 1.20844 0.82552 0.81924 0.87324 1.90207 1.60088 1.54680 1.40381 1.41008 1.04474 1.42062 1.22294 1.19714 1.24305 0.93250 1.14509 0.88171 1.26376 0.99569 0.95045 0.97005 1.70119 1.36105 1.03880 1.40425 0.85085 0.77696 0.79548 0.77540 1.17787 1.19527 1.20331 1.18649 0.93565 0.94344 0.88115 1.21051 0.94344 1.00107 0.98791 1.21172 1.00322 0.98385 0.94387 1.21263 0.93828 1.02937 0.99934 1.21256 0.96061 0.98073 0.98345 1.22789 1.03245 1.02182 0.95148 1.22979 1.05590 0.99247 0.92753 1.22691 0.92328 1.01776 1.03046 1.23006 0.97673 1.03095 0.95969 0.91003 0.91096 0.88915 0.76569 0.84695 0.85167 0.87685 0.88756 0.91306 0.86413 0.84771 0.83834 0.84480 0.82313 0.88049 0.89129 0.90322 0.88059 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.76 71.98 0.63 -1.27 16 2 C 0.17 3.44 0.92 -10.79 -0.01 3.43 16 3 O -0.57 -13.63 12.12 -132.58 -1.61 -15.23 16 4 C -0.14 -2.77 5.09 29.85 0.15 -2.62 16 5 C 0.46 13.49 7.45 71.24 0.53 14.02 16 6 O -0.52 -16.34 11.11 27.70 0.31 -16.03 16 7 O -0.35 -12.85 9.76 -45.09 -0.44 -13.29 16 8 C 0.09 3.60 4.77 71.23 0.34 3.94 16 9 C 0.48 23.40 7.65 87.66 0.67 24.08 16 10 O -0.57 -29.11 12.90 15.72 0.20 -28.91 16 11 N -0.39 -19.72 2.60 -458.91 -1.19 -20.91 16 12 C -0.39 -19.07 7.53 84.02 0.63 -18.43 16 13 H 0.10 4.63 7.84 -2.91 -0.02 4.60 16 14 C 0.03 1.31 3.66 84.91 0.31 1.62 16 15 N -0.87 -44.86 11.39 21.65 0.25 -44.61 16 16 Si 0.98 37.47 29.56 68.60 2.03 39.49 16 17 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 18 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 19 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 20 C 0.15 7.53 6.06 38.22 0.23 7.76 16 21 C -0.12 -5.78 7.93 22.40 0.18 -5.60 16 22 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 23 C -0.16 -5.78 10.04 22.30 0.22 -5.56 16 24 C -0.12 -4.66 10.04 22.25 0.22 -4.43 16 25 C -0.21 -10.14 9.05 22.41 0.20 -9.94 16 26 C -0.19 -3.99 3.97 -10.79 -0.04 -4.03 16 27 C -0.16 -3.84 7.95 30.60 0.24 -3.60 16 28 C -0.16 -3.04 9.61 30.60 0.29 -2.74 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.01 7.13 -2.39 -0.02 0.99 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.38 9.64 5.36 -74.05 -0.40 9.24 16 33 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.13 2.30 8.14 -2.38 -0.02 2.29 16 35 H 0.11 3.96 8.13 -2.39 -0.02 3.94 16 36 H 0.09 3.99 8.02 -2.39 -0.02 3.97 16 37 H 0.28 13.40 8.32 -92.71 -0.77 12.63 16 38 H 0.12 5.82 5.22 -2.91 -0.02 5.80 16 39 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.16 7.97 4.52 -63.12 -0.29 7.69 16 43 H 0.10 2.19 8.11 -2.38 -0.02 2.17 16 44 H 0.09 2.28 6.29 -2.39 -0.02 2.27 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.10 1.79 7.58 -2.39 -0.02 1.78 16 Total: -1.00 -62.59 380.84 4.91 -57.68 By element: Atomic # 1 Polarization: 49.55 SS G_CDS: 0.33 Total: 49.89 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.03 Total: -8.06 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.95 Total: -65.53 kcal Atomic # 8 Polarization: -71.93 SS G_CDS: -1.54 Total: -73.46 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Total: -62.59 4.91 -57.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756308320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.667 kcal (2) G-P(sol) polarization free energy of solvation -62.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds